Wall clock time and date at job start Tue Mar 31 2020 10:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35696 * 120.48134 * 2 1 4 4 C 1.40164 * 119.26841 * 179.81932 * 3 2 1 5 5 N 1.31270 * 120.35558 * 0.43562 * 4 3 2 6 6 C 1.33987 * 120.87826 * 359.79101 * 5 4 3 7 7 N 1.32505 * 132.32535 * 179.97438 * 6 5 4 8 8 C 1.33520 * 109.75148 * 180.02562 * 7 6 5 9 9 C 1.47980 * 125.33264 * 180.02562 * 8 7 6 10 10 O 1.21574 * 119.99926 * 174.35813 * 9 8 7 11 11 N 1.34773 * 120.00053 * 354.35237 * 9 8 7 12 12 C 1.36818 * 120.00319 * 4.07738 * 11 9 8 13 13 H 1.08001 * 120.00075 * 318.35935 * 12 11 9 14 14 C 1.39077 * 120.00412 * 138.35412 * 12 11 9 15 15 N 1.31336 * 120.00206 * 166.10897 * 14 12 11 16 16 Si 1.86803 * 119.99966 * 346.11593 * 14 12 11 17 17 H 1.48497 * 109.47344 * 86.36802 * 16 14 12 18 18 H 1.48493 * 109.47019 * 206.37461 * 16 14 12 19 19 H 1.48504 * 109.46660 * 326.37177 * 16 14 12 20 20 C 1.46504 * 119.99878 * 184.07533 * 11 9 8 21 21 C 1.54266 * 110.03304 * 61.68133 * 20 11 9 22 22 C 1.54965 * 104.15950 * 217.13891 * 21 20 11 23 23 C 1.54881 * 102.77959 * 37.88749 * 22 21 20 24 24 C 1.53873 * 110.02929 * 304.46368 * 20 11 9 25 25 N 1.32064 * 109.33036 * 0.02562 * 8 7 6 26 26 N 1.36150 * 120.48348 * 180.26908 * 2 1 3 27 27 H 1.08993 * 109.47477 * 269.72744 * 1 2 3 28 28 H 1.09003 * 109.47206 * 149.72057 * 1 2 3 29 29 H 1.08999 * 109.47310 * 29.72924 * 1 2 3 30 30 H 1.08001 * 120.36529 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.82482 * 180.23022 * 4 3 2 32 32 H 0.97005 * 120.00163 * 180.02562 * 15 14 12 33 33 H 1.08994 * 110.01743 * 183.07055 * 20 11 9 34 34 H 1.09007 * 110.48685 * 335.78230 * 21 20 11 35 35 H 1.08998 * 110.48615 * 98.42328 * 21 20 11 36 36 H 1.09000 * 110.71941 * 279.57254 * 22 21 20 37 37 H 1.09003 * 110.92349 * 156.29433 * 22 21 20 38 38 H 1.09004 * 110.48989 * 203.40904 * 23 22 21 39 39 H 1.08999 * 110.60419 * 80.81979 * 23 22 21 40 40 H 1.09008 * 110.03316 * 238.56348 * 24 20 11 41 41 H 1.08990 * 110.03827 * 359.95057 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1694 0.0000 4 6 3.5966 1.1398 0.0039 5 7 4.2359 -0.0067 -0.0012 6 6 3.5664 -1.1674 -0.0059 7 7 3.9692 -2.4297 -0.0118 8 6 2.9092 -3.2415 -0.0152 9 6 2.9638 -4.7203 -0.0215 10 8 1.9392 -5.3669 0.0793 11 7 4.1494 -5.3504 -0.1390 12 6 5.3094 -4.6255 -0.1685 13 1 5.3590 -3.7088 -0.7375 14 6 6.4247 -5.0690 0.5341 15 7 7.6033 -4.5401 0.2970 16 14 6.2465 -6.4170 1.8149 17 1 6.3477 -7.7435 1.1550 18 1 7.3250 -6.2840 2.8269 19 1 4.9248 -6.2952 2.4810 20 6 4.1960 -6.8115 -0.2351 21 6 3.4442 -7.2824 -1.4971 22 6 2.7444 -8.5924 -1.0548 23 6 2.3081 -8.2744 0.3969 24 6 3.4744 -7.4421 0.9688 25 7 1.8044 -2.5180 -0.0122 26 7 2.1977 -1.1733 -0.0055 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3634 -0.8875 -0.5182 29 1 -0.3634 0.8924 -0.5096 30 1 1.6692 2.1126 0.0004 31 1 4.1535 2.0651 0.0077 32 1 8.3812 -4.8497 0.7868 33 1 5.2314 -7.1503 -0.2691 34 1 2.7063 -6.5398 -1.8010 35 1 4.1456 -7.4786 -2.3080 36 1 3.4435 -9.4284 -1.0737 37 1 1.8775 -8.8014 -1.6816 38 1 2.1805 -9.1946 0.9672 39 1 1.3862 -7.6929 0.4017 40 1 4.1594 -8.0878 1.5185 41 1 3.0902 -6.6612 1.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:54 Heat of formation + Delta-G solvation = 130.363799 kcal Electronic energy + Delta-G solvation = -26968.877657 eV Core-core repulsion = 23273.674821 eV Total energy + Delta-G solvation = -3695.202835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48634 -39.65687 -38.40545 -36.23173 -35.05515 -34.43960 -31.82715 -31.41379 -30.48028 -28.47223 -28.21536 -27.59530 -25.29121 -24.04644 -23.82118 -21.59254 -20.40708 -20.18537 -18.87488 -18.28294 -17.87992 -17.05711 -16.39488 -16.01944 -15.57386 -15.13770 -14.71134 -14.17456 -14.13386 -13.94433 -13.81411 -13.54330 -13.30695 -12.78966 -12.66927 -12.51440 -12.43127 -12.24169 -12.16918 -11.43627 -11.25512 -11.11640 -10.94836 -10.78378 -10.51427 -10.36612 -10.00229 -9.94802 -9.79266 -9.75941 -9.34107 -9.31986 -9.15126 -8.74177 -8.41156 -7.72824 -6.33673 -3.97064 0.55049 0.91458 2.10270 2.41031 3.11672 3.27070 3.32971 3.55122 3.57539 3.80693 4.16138 4.20184 4.21999 4.49314 4.79903 4.96544 5.12309 5.16359 5.19844 5.20376 5.26916 5.32122 5.41406 5.55118 5.67950 5.94421 6.04266 6.06827 6.13524 6.17635 6.19694 6.37742 6.42479 6.44389 6.49321 6.55048 6.60197 6.80894 6.90564 6.96897 7.40525 7.69696 8.06589 8.29179 8.57414 8.99110 9.32956 9.56587 10.73683 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.005208 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.228198 B = 5375.250234 C = 6670.334656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.198 3.802 3 C -0.240 4.240 4 C 0.195 3.805 5 N -0.446 5.446 6 C 0.420 3.580 7 N -0.440 5.440 8 C 0.269 3.731 9 C 0.545 3.455 10 O -0.564 6.564 11 N -0.421 5.421 12 C -0.327 4.327 13 H 0.139 0.861 14 C 0.070 3.930 15 N -0.851 5.851 16 Si 0.865 3.135 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.253 1.253 20 C 0.126 3.874 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.134 4.134 25 N -0.297 5.297 26 N -0.333 5.333 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.275 0.725 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 7.873 -0.800 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.266 4.266 4 C 0.007 3.993 5 N -0.160 5.160 6 C 0.060 3.940 7 N -0.171 5.171 8 C -0.012 4.012 9 C 0.331 3.669 10 O -0.446 6.446 11 N -0.140 5.140 12 C -0.455 4.455 13 H 0.156 0.844 14 C -0.138 4.138 15 N -0.486 5.486 16 Si 0.692 3.308 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.177 1.177 20 C 0.023 3.977 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.173 4.173 25 N -0.131 5.131 26 N -0.115 5.115 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.153 6.617 -0.714 12.139 hybrid contribution -0.402 -0.038 0.808 0.903 sum -10.554 6.579 0.094 12.437 Atomic orbital electron populations 1.21012 0.86963 1.05143 1.04593 1.20816 0.96343 0.82566 0.92374 1.21655 0.95796 0.97542 1.11572 1.23473 0.91595 0.95826 0.88378 1.68041 1.36415 0.95186 1.16389 1.23573 0.78144 0.94473 0.97801 1.71985 1.26446 0.94635 1.24026 1.24462 0.84801 0.97315 0.94644 1.16485 0.84905 0.81678 0.83877 1.90678 1.34268 1.64350 1.55335 1.43763 1.05670 1.04560 1.59967 1.19893 0.86231 1.08578 1.30827 0.84438 1.25407 0.94988 0.97093 0.96313 1.69648 0.98600 1.41357 1.39039 0.87337 0.78989 0.81754 0.82680 1.19753 1.21715 1.17701 1.22057 1.00164 0.80726 0.94778 1.22636 0.99311 0.97356 0.96973 1.22408 0.99416 0.97029 0.96801 1.22248 0.99343 0.98316 0.95114 1.22670 0.97138 0.99466 0.97980 1.78850 1.19668 0.82565 1.32008 1.49349 1.09339 1.06343 1.46475 0.88953 0.89273 0.88881 0.81602 0.79825 0.91500 0.88664 0.90473 0.91818 0.92192 0.91986 0.92984 0.90275 0.92838 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.13 36.00 0.36 -0.70 16 2 C 0.20 2.52 6.86 -81.59 -0.56 1.97 16 3 C -0.24 -2.23 9.72 -39.77 -0.39 -2.61 16 4 C 0.20 2.19 11.27 -17.07 -0.19 2.00 16 5 N -0.45 -8.00 10.48 -13.79 -0.14 -8.14 16 6 C 0.42 8.92 8.98 -323.03 -2.90 6.02 16 7 N -0.44 -11.01 7.89 -12.25 -0.10 -11.10 16 8 C 0.27 6.61 7.67 -156.74 -1.20 5.41 16 9 C 0.55 13.71 6.46 -12.27 -0.08 13.63 16 10 O -0.56 -14.11 12.99 5.30 0.07 -14.04 16 11 N -0.42 -10.57 2.11 -107.56 -0.23 -10.80 16 12 C -0.33 -9.00 8.40 -15.02 -0.13 -9.12 16 13 H 0.14 4.13 6.01 -52.49 -0.32 3.81 16 14 C 0.07 1.92 5.27 -17.45 -0.09 1.83 16 15 N -0.85 -24.42 13.95 55.50 0.77 -23.64 16 16 Si 0.87 20.88 22.88 -169.99 -3.89 16.99 16 17 H -0.27 -6.14 6.46 56.52 0.37 -5.77 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.25 -6.12 5.62 56.52 0.32 -5.80 16 20 C 0.13 2.81 2.09 -66.81 -0.14 2.67 16 21 C -0.12 -2.42 6.12 -25.03 -0.15 -2.57 16 22 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 23 C -0.11 -2.00 6.40 -25.07 -0.16 -2.16 16 24 C -0.13 -2.80 3.66 -25.61 -0.09 -2.90 16 25 N -0.30 -6.53 12.68 32.01 0.41 -6.13 16 26 N -0.33 -6.22 3.91 -10.07 -0.04 -6.26 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.10 2.18 4.93 -51.93 -0.26 1.93 16 34 H 0.08 1.63 6.58 -51.93 -0.34 1.28 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 40 H 0.05 1.06 6.40 -51.92 -0.33 0.72 16 41 H 0.08 1.82 6.14 -51.93 -0.32 1.50 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -34.60 324.62 -9.14 -43.75 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.99 Total: 3.16 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: -5.89 Total: 11.33 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.67 Total: -66.08 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.89 Total: 16.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.60 -9.14 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.110 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds