Wall clock time and date at job start Tue Mar 31 2020 11:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 H 1.09002 * 109.47491 * 305.59772 * 3 2 1 5 5 N 1.46903 * 109.46599 * 185.59903 * 3 2 1 6 6 C 1.46898 * 110.99893 * 85.95727 * 5 3 2 7 7 H 1.08997 * 109.47228 * 321.80570 * 6 5 3 8 8 C 1.53001 * 109.47035 * 201.81229 * 6 5 3 9 9 C 1.50695 * 109.47390 * 64.99706 * 8 6 5 10 10 H 1.08001 * 120.00031 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00435 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00417 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46575 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47164 * 120.00141 * 13 11 9 16 16 H 1.48499 * 109.47252 * 240.00286 * 13 11 9 17 17 C 1.50697 * 109.47472 * 81.81227 * 6 5 3 18 18 C 1.38246 * 119.99835 * 39.72629 * 17 6 5 19 19 C 1.38230 * 119.99588 * 179.79203 * 18 17 6 20 20 C 1.38242 * 120.00234 * 0.43941 * 19 18 17 21 21 C 1.38232 * 119.99771 * 359.81270 * 20 19 18 22 22 C 1.38225 * 120.00184 * 359.97438 * 21 20 19 23 23 C 1.50697 * 109.47208 * 65.60157 * 3 2 1 24 24 C 1.33383 * 125.20392 * 259.71652 * 23 3 2 25 25 C 1.38432 * 114.92254 * 179.86038 * 24 23 3 26 26 C 1.33386 * 114.91928 * 0.42756 * 25 24 23 27 27 S 1.75883 * 125.20399 * 80.02053 * 23 3 2 28 28 H 1.09004 * 109.47302 * 174.45308 * 1 2 3 29 29 H 1.09003 * 109.47177 * 54.45844 * 1 2 3 30 30 H 1.08995 * 109.47134 * 294.45938 * 1 2 3 31 31 H 1.08998 * 109.46806 * 120.00514 * 2 1 3 32 32 H 1.09005 * 109.46571 * 240.00127 * 2 1 3 33 33 H 1.00910 * 111.00065 * 209.90766 * 5 3 2 34 34 H 1.09003 * 109.47339 * 185.00269 * 8 6 5 35 35 H 1.09005 * 109.47171 * 305.00023 * 8 6 5 36 36 H 0.97001 * 119.99953 * 180.02562 * 12 11 9 37 37 H 1.07998 * 119.99846 * 359.97438 * 18 17 6 38 38 H 1.08000 * 120.00041 * 180.27311 * 19 18 17 39 39 H 1.08000 * 119.99856 * 179.84102 * 20 19 18 40 40 H 1.08005 * 119.99730 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00139 * 179.97438 * 22 21 20 42 42 H 1.08005 * 122.53919 * 0.02562 * 24 23 3 43 43 H 1.07999 * 122.53966 * 180.20502 * 25 24 23 44 44 H 1.07993 * 125.20301 * 179.79345 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 7 3.5028 1.4446 -0.1351 6 6 3.9009 1.3932 -1.5482 7 1 3.2252 0.7335 -2.0923 8 6 5.3309 0.8598 -1.6560 9 6 5.3716 -0.5687 -1.1781 10 1 4.4680 -1.0482 -0.8317 11 6 6.5623 -1.2638 -1.1831 12 7 7.6628 -0.6798 -1.6045 13 14 6.6129 -3.0344 -0.5900 14 1 5.2518 -3.4550 -0.1709 15 1 7.0846 -3.9120 -1.6911 16 1 7.5423 -3.1439 0.5630 17 6 3.8354 2.7779 -2.1393 18 6 4.2549 3.8666 -1.3977 19 6 4.1988 5.1361 -1.9415 20 6 3.7148 5.3182 -3.2236 21 6 3.2904 4.2302 -3.9631 22 6 3.3506 2.9601 -3.4210 23 6 1.6540 2.1117 1.2939 24 6 0.6228 2.9427 1.4521 25 6 0.4613 3.4342 2.7361 26 6 1.3668 3.0094 3.6185 27 16 2.4991 1.9224 2.8248 28 1 -0.3634 -1.0229 -0.0993 29 1 -0.3634 0.5974 -0.8362 30 1 -0.3633 0.4255 0.9354 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 3.9073 2.2460 0.3256 34 1 5.6582 0.9050 -2.6947 35 1 5.9930 1.4681 -1.0397 36 1 8.5005 -1.1688 -1.6083 37 1 4.6292 3.7247 -0.3947 38 1 4.5307 5.9862 -1.3639 39 1 3.6686 6.3105 -3.6475 40 1 2.9126 4.3724 -4.9649 41 1 3.0187 2.1101 -3.9986 42 1 -0.0380 3.2097 0.6405 43 1 -0.3352 4.1132 3.0023 44 1 1.3995 3.2896 4.6609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:37 Heat of formation + Delta-G solvation = 48.593211 kcal Electronic energy + Delta-G solvation = -24056.609137 eV Core-core repulsion = 20871.860926 eV Total energy + Delta-G solvation = -3184.748211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.39915 -38.12040 -36.34693 -33.92416 -32.35189 -30.73725 -30.30110 -29.26856 -28.35087 -25.37688 -24.05939 -23.34880 -22.24133 -21.87143 -20.73799 -19.80713 -18.88493 -17.23861 -16.59040 -16.04924 -15.50730 -15.07658 -14.80943 -14.46237 -14.42470 -14.22309 -13.82924 -13.25360 -13.07070 -12.83692 -12.60105 -12.57221 -12.42906 -12.27975 -12.03098 -11.80028 -11.48096 -11.17068 -11.03279 -10.96139 -10.79796 -10.63733 -10.60178 -10.48109 -10.37505 -10.07296 -9.60494 -9.01175 -8.62279 -8.52794 -8.29925 -8.26151 -8.21292 -7.79414 -5.88035 -3.86202 1.13749 1.69701 1.70586 1.81380 2.23828 2.84294 3.38561 3.46305 3.50887 4.11086 4.56682 4.60341 4.88202 5.12641 5.17589 5.18699 5.28133 5.39022 5.42488 5.45192 5.49708 5.58016 5.63435 5.72387 5.78405 5.84537 5.87040 6.03128 6.08540 6.18949 6.24160 6.30621 6.35473 6.39355 6.48545 6.56704 6.64488 6.75894 6.77375 6.83261 6.97931 7.32524 7.48213 7.65345 7.93410 7.98754 8.13019 8.55596 9.19117 9.75282 11.23841 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008601 B = 0.005878 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.766097 B = 4762.115235 C = 6725.736790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.155 3.845 4 H 0.055 0.945 5 N -0.654 5.654 6 C 0.130 3.870 7 H 0.078 0.922 8 C 0.042 3.958 9 C -0.487 4.487 10 H 0.062 0.938 11 C 0.051 3.949 12 N -0.902 5.902 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.287 1.287 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.135 4.135 26 C -0.238 4.238 27 S 0.143 5.857 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.336 0.664 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.257 0.743 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.236 10.128 3.947 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.044 3.956 4 H 0.073 0.927 5 N -0.285 5.285 6 C 0.020 3.980 7 H 0.096 0.904 8 C 0.005 3.995 9 C -0.526 4.526 10 H 0.080 0.920 11 C -0.148 4.148 12 N -0.543 5.543 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.215 1.215 16 H -0.213 1.213 17 C -0.094 4.094 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.155 4.155 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.280 4.280 24 C -0.179 4.179 25 C -0.166 4.166 26 C -0.374 4.374 27 S 0.407 5.593 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.715 8.583 4.531 15.996 hybrid contribution -1.233 0.898 -0.397 1.576 sum -13.948 9.481 4.134 17.365 Atomic orbital electron populations 1.21789 0.96391 1.01212 1.01374 1.21536 0.94251 0.95211 1.03688 1.20118 0.90189 0.95149 0.90169 0.92711 1.60842 1.05293 1.47819 1.14551 1.21028 1.01903 0.89049 0.85998 0.90405 1.19089 0.87210 0.96195 0.97023 1.21140 0.94308 0.96482 1.40679 0.92015 1.24988 0.95910 0.97901 0.95998 1.69982 0.99147 1.36676 1.48460 0.86595 0.77948 0.85535 0.78250 1.19761 1.21469 1.21316 1.21179 0.95710 0.97733 0.94763 1.20947 1.00078 0.92403 1.00125 1.21044 0.99960 0.96932 0.95692 1.21004 1.01020 0.98407 0.95022 1.21071 1.00487 0.92965 0.99401 1.21071 1.00180 0.96928 0.95354 1.24793 1.00581 1.03285 0.99324 1.20035 0.99745 1.00299 0.97868 1.20055 1.00828 1.02851 0.92836 1.25733 1.01709 1.06227 1.03721 1.84733 1.29751 1.44409 1.00454 0.92875 0.93222 0.92932 0.91209 0.90674 0.84351 0.96218 0.96319 0.93379 0.86429 0.86674 0.86823 0.86680 0.86274 0.84964 0.85037 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.60 37.16 0.36 -1.50 16 2 C -0.11 -1.65 5.62 -26.73 -0.15 -1.80 16 3 C 0.16 2.37 2.32 -68.87 -0.16 2.21 16 4 H 0.06 0.84 7.48 -51.93 -0.39 0.46 16 5 N -0.65 -11.75 5.54 -102.17 -0.57 -12.32 16 6 C 0.13 2.52 2.00 -68.87 -0.14 2.39 16 7 H 0.08 1.53 7.03 -51.93 -0.37 1.16 16 8 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 9 C -0.49 -13.27 8.84 -34.44 -0.30 -13.58 16 10 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 11 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C -0.09 -1.60 4.44 -104.62 -0.46 -2.07 16 18 C -0.12 -1.92 9.16 -39.58 -0.36 -2.28 16 19 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 20 C -0.14 -1.85 10.05 -39.58 -0.40 -2.24 16 21 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 22 C -0.12 -1.86 9.67 -39.59 -0.38 -2.24 16 23 C -0.16 -2.26 4.38 -36.01 -0.16 -2.42 16 24 C -0.15 -1.86 9.54 -41.21 -0.39 -2.25 16 25 C -0.13 -1.53 10.18 -41.21 -0.42 -1.95 16 26 C -0.24 -2.74 11.23 29.04 0.33 -2.42 16 27 S 0.14 1.96 22.86 -107.50 -2.46 -0.50 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.64 7.21 -51.93 -0.37 0.27 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.24 7.41 -51.93 -0.38 0.86 16 33 H 0.34 5.93 5.81 -39.29 -0.23 5.71 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.12 1.91 6.49 -52.49 -0.34 1.57 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 41 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 42 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -29.77 374.32 -12.03 -41.80 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.70 Total: 6.90 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -3.67 Total: -32.06 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.17 Total: -38.63 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.46 Total: -0.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.77 -12.03 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.390 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds