Wall clock time and date at job start Tue Mar 31 2020 11:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 H 1.09002 * 109.47491 * 305.59772 * 3 2 1 5 5 N 1.46903 * 109.46599 * 185.59903 * 3 2 1 6 6 C 1.46898 * 110.99893 * 85.95727 * 5 3 2 7 7 H 1.08997 * 109.47228 * 321.80570 * 6 5 3 8 8 C 1.53001 * 109.47035 * 201.81229 * 6 5 3 9 9 C 1.50695 * 109.47390 * 64.99706 * 8 6 5 10 10 H 1.08001 * 120.00031 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00435 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00417 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46575 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47164 * 120.00141 * 13 11 9 16 16 H 1.48499 * 109.47252 * 240.00286 * 13 11 9 17 17 C 1.50697 * 109.47472 * 81.81227 * 6 5 3 18 18 C 1.38246 * 119.99835 * 39.72629 * 17 6 5 19 19 C 1.38230 * 119.99588 * 179.79203 * 18 17 6 20 20 C 1.38242 * 120.00234 * 0.43941 * 19 18 17 21 21 C 1.38232 * 119.99771 * 359.81270 * 20 19 18 22 22 C 1.38225 * 120.00184 * 359.97438 * 21 20 19 23 23 C 1.50697 * 109.47208 * 65.60157 * 3 2 1 24 24 C 1.33383 * 125.20392 * 259.71652 * 23 3 2 25 25 C 1.38432 * 114.92254 * 179.86038 * 24 23 3 26 26 C 1.33386 * 114.91928 * 0.42756 * 25 24 23 27 27 S 1.75883 * 125.20399 * 80.02053 * 23 3 2 28 28 H 1.09004 * 109.47302 * 174.45308 * 1 2 3 29 29 H 1.09003 * 109.47177 * 54.45844 * 1 2 3 30 30 H 1.08995 * 109.47134 * 294.45938 * 1 2 3 31 31 H 1.08998 * 109.46806 * 120.00514 * 2 1 3 32 32 H 1.09005 * 109.46571 * 240.00127 * 2 1 3 33 33 H 1.00910 * 111.00065 * 209.90766 * 5 3 2 34 34 H 1.09003 * 109.47339 * 185.00269 * 8 6 5 35 35 H 1.09005 * 109.47171 * 305.00023 * 8 6 5 36 36 H 0.97001 * 119.99953 * 180.02562 * 12 11 9 37 37 H 1.07998 * 119.99846 * 359.97438 * 18 17 6 38 38 H 1.08000 * 120.00041 * 180.27311 * 19 18 17 39 39 H 1.08000 * 119.99856 * 179.84102 * 20 19 18 40 40 H 1.08005 * 119.99730 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00139 * 179.97438 * 22 21 20 42 42 H 1.08005 * 122.53919 * 0.02562 * 24 23 3 43 43 H 1.07999 * 122.53966 * 180.20502 * 25 24 23 44 44 H 1.07993 * 125.20301 * 179.79345 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 7 3.5028 1.4446 -0.1351 6 6 3.9009 1.3932 -1.5482 7 1 3.2252 0.7335 -2.0923 8 6 5.3309 0.8598 -1.6560 9 6 5.3716 -0.5687 -1.1781 10 1 4.4680 -1.0482 -0.8317 11 6 6.5623 -1.2638 -1.1831 12 7 7.6628 -0.6798 -1.6045 13 14 6.6129 -3.0344 -0.5900 14 1 5.2518 -3.4550 -0.1709 15 1 7.0846 -3.9120 -1.6911 16 1 7.5423 -3.1439 0.5630 17 6 3.8354 2.7779 -2.1393 18 6 4.2549 3.8666 -1.3977 19 6 4.1988 5.1361 -1.9415 20 6 3.7148 5.3182 -3.2236 21 6 3.2904 4.2302 -3.9631 22 6 3.3506 2.9601 -3.4210 23 6 1.6540 2.1117 1.2939 24 6 0.6228 2.9427 1.4521 25 6 0.4613 3.4342 2.7361 26 6 1.3668 3.0094 3.6185 27 16 2.4991 1.9224 2.8248 28 1 -0.3634 -1.0229 -0.0993 29 1 -0.3634 0.5974 -0.8362 30 1 -0.3633 0.4255 0.9354 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 3.9073 2.2460 0.3256 34 1 5.6582 0.9050 -2.6947 35 1 5.9930 1.4681 -1.0397 36 1 8.5005 -1.1688 -1.6083 37 1 4.6292 3.7247 -0.3947 38 1 4.5307 5.9862 -1.3639 39 1 3.6686 6.3105 -3.6475 40 1 2.9126 4.3724 -4.9649 41 1 3.0187 2.1101 -3.9986 42 1 -0.0380 3.2097 0.6405 43 1 -0.3352 4.1132 3.0023 44 1 1.3995 3.2896 4.6609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090664532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:36 Heat of formation + Delta-G solvation = 34.256426 kcal Electronic energy + Delta-G solvation = -24057.230827 eV Core-core repulsion = 20871.860926 eV Total energy + Delta-G solvation = -3185.369900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67245 -39.18002 -37.56569 -35.48359 -34.21535 -31.94397 -31.48646 -30.62257 -29.85398 -26.84717 -25.55078 -24.39875 -23.69429 -23.22965 -21.96601 -21.12239 -19.95900 -18.67731 -18.03064 -17.60978 -16.64731 -16.49403 -16.29426 -16.01684 -15.59048 -15.43521 -15.04611 -14.56462 -14.31373 -14.21027 -14.15198 -13.71063 -13.54603 -13.50971 -13.44659 -12.99187 -12.86502 -12.78262 -12.55600 -12.34754 -12.27501 -12.20603 -12.00345 -11.83476 -11.65742 -11.41686 -11.38123 -11.10371 -10.49250 -9.79750 -9.56199 -9.49206 -9.33761 -9.19801 -8.08964 -6.13750 0.15936 0.49855 0.52747 0.79949 1.26718 1.40540 1.42011 1.54549 1.90871 2.47304 2.91949 3.20963 3.33222 3.72031 3.95331 4.00856 4.17821 4.22814 4.27285 4.30127 4.31060 4.49896 4.57104 4.60809 4.67657 4.70995 4.73836 4.78229 4.91487 5.02860 5.15037 5.17075 5.19020 5.23943 5.28393 5.41412 5.46139 5.49448 5.58402 5.61583 5.62370 5.64163 5.74520 5.90010 6.15915 6.28508 6.42584 6.57680 6.99781 7.51827 9.03370 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008601 B = 0.005878 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.766097 B = 4762.115235 C = 6725.736790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.165 3.835 4 H 0.055 0.945 5 N -0.667 5.667 6 C 0.147 3.853 7 H 0.070 0.930 8 C 0.054 3.946 9 C -0.492 4.492 10 H 0.061 0.939 11 C -0.004 4.004 12 N -0.940 5.940 13 Si 0.954 3.046 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.285 1.285 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.179 4.179 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.222 4.222 27 S 0.089 5.911 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.335 0.665 34 H -0.012 1.012 35 H -0.013 1.013 36 H 0.258 0.742 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.633 11.768 4.214 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.054 3.946 4 H 0.073 0.927 5 N -0.298 5.298 6 C 0.038 3.962 7 H 0.088 0.912 8 C 0.016 3.984 9 C -0.530 4.530 10 H 0.079 0.921 11 C -0.200 4.200 12 N -0.582 5.582 13 Si 0.780 3.220 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.211 1.211 17 C -0.116 4.116 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.297 4.297 24 C -0.169 4.169 25 C -0.167 4.167 26 C -0.358 4.358 27 S 0.352 5.648 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.180 0.820 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.135 10.222 4.800 18.884 hybrid contribution -0.517 0.494 -0.481 0.862 sum -15.652 10.716 4.319 19.455 Atomic orbital electron populations 1.21694 0.93836 1.02087 1.02055 1.21499 0.96454 0.94909 1.01677 1.19975 0.88142 0.95279 0.91204 0.92703 1.60715 1.07526 1.48068 1.13502 1.20493 0.97971 0.90480 0.87297 0.91157 1.18848 0.90351 0.95083 0.94100 1.21455 0.94166 0.97620 1.39808 0.92095 1.25825 0.95640 1.02209 0.96324 1.70116 0.99738 1.38441 1.49955 0.85557 0.78210 0.80486 0.77737 1.18838 1.20832 1.21072 1.20967 0.98140 0.96611 0.95888 1.20998 1.00794 0.93349 0.99960 1.21361 0.99390 0.96589 0.96503 1.21448 0.99069 0.99906 0.94312 1.21429 0.99536 0.92019 1.00686 1.21238 1.00593 0.98374 0.94802 1.24568 1.01791 1.04927 0.98413 1.20312 0.98801 0.98800 0.98940 1.20363 1.01391 1.02929 0.92013 1.26010 1.00262 1.04669 1.04834 1.84921 1.31762 1.46399 1.01707 0.92019 0.92154 0.92402 0.92986 0.92808 0.84446 0.99330 0.99419 0.93356 0.87406 0.84242 0.83284 0.83649 0.86059 0.83525 0.81985 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.60 71.98 0.69 -2.62 16 2 C -0.11 -3.33 5.62 30.59 0.17 -3.15 16 3 C 0.17 5.15 2.32 44.17 0.10 5.25 16 4 H 0.06 1.70 7.48 -2.39 -0.02 1.69 16 5 N -0.67 -25.26 5.54 -477.17 -2.64 -27.90 16 6 C 0.15 6.08 2.00 44.17 0.09 6.17 16 7 H 0.07 2.93 7.03 -2.39 -0.02 2.92 16 8 C 0.05 2.84 4.63 29.85 0.14 2.98 16 9 C -0.49 -28.03 8.84 25.60 0.23 -27.80 16 10 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 11 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 12 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 13 Si 0.95 46.04 29.54 68.60 2.03 48.07 16 14 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 17 C -0.11 -4.11 4.44 -19.86 -0.09 -4.20 16 18 C -0.13 -4.42 9.16 22.27 0.20 -4.21 16 19 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 20 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 21 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 22 C -0.13 -4.17 9.67 22.27 0.22 -3.95 16 23 C -0.18 -4.94 4.38 24.59 0.11 -4.83 16 24 C -0.14 -3.14 9.54 21.22 0.20 -2.94 16 25 C -0.14 -2.68 10.18 21.22 0.22 -2.47 16 26 C -0.22 -4.61 11.23 66.72 0.75 -3.87 16 27 S 0.09 2.44 22.86 -56.49 -1.29 1.15 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.32 7.21 -2.39 -0.02 1.30 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.87 7.41 -2.38 -0.02 1.85 16 33 H 0.33 12.59 5.81 -89.69 -0.52 12.07 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.74 8.14 -2.38 -0.02 -0.75 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.11 3.70 6.49 -2.91 -0.02 3.68 16 38 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.12 3.66 8.04 -2.91 -0.02 3.64 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -67.06 374.32 2.99 -64.07 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.46 Total: 27.03 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 4.16 Total: -54.16 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.36 Total: -86.15 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.29 Total: 1.15 kcal Total: -67.06 2.99 -64.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.324 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds