Wall clock time and date at job start Tue Mar 31 2020 10:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38431 * 122.53854 * 2 1 4 4 C 1.33388 * 114.92116 * 180.02562 * 3 2 1 5 5 S 1.75878 * 109.59412 * 359.75576 * 4 3 2 6 6 C 1.33388 * 122.54308 * 180.02562 * 2 1 3 7 7 C 1.50702 * 125.20241 * 359.95174 * 6 2 1 8 8 H 1.09000 * 109.46624 * 345.00227 * 7 6 2 9 9 C 1.52997 * 109.46884 * 105.00114 * 7 6 2 10 10 N 1.46898 * 109.47025 * 225.00529 * 7 6 2 11 11 C 1.46897 * 111.00036 * 153.87367 * 10 7 6 12 12 H 1.08999 * 109.47343 * 37.39785 * 11 10 7 13 13 C 1.53002 * 109.47509 * 157.40331 * 11 10 7 14 14 C 1.50697 * 109.46704 * 294.70674 * 13 11 10 15 15 H 1.07996 * 120.00614 * 4.65540 * 14 13 11 16 16 C 1.37881 * 119.99870 * 184.65134 * 14 13 11 17 17 N 1.31517 * 119.99871 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47448 * 60.00072 * 18 16 14 20 20 H 1.48497 * 109.47074 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47159 * 299.99681 * 18 16 14 22 22 C 1.50705 * 109.46861 * 277.40189 * 11 10 7 23 23 C 1.38238 * 119.99476 * 139.99742 * 22 11 10 24 24 C 1.38241 * 119.99679 * 179.97438 * 23 22 11 25 25 C 1.38238 * 119.99869 * 0.07168 * 24 23 22 26 26 C 1.38236 * 120.00085 * 359.88519 * 25 24 23 27 27 C 1.38230 * 120.00023 * 319.97729 * 22 11 10 28 28 H 1.09002 * 109.47313 * 269.97716 * 1 2 3 29 29 H 1.08999 * 109.47530 * 29.97589 * 1 2 3 30 30 H 1.09005 * 109.46760 * 149.97691 * 1 2 3 31 31 H 1.08001 * 122.53807 * 359.97438 * 3 2 1 32 32 H 1.08003 * 125.20089 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47561 * 305.14373 * 9 7 6 34 34 H 1.09005 * 109.46821 * 65.14068 * 9 7 6 35 35 H 1.08999 * 109.46647 * 185.13606 * 9 7 6 36 36 H 1.00900 * 111.00209 * 29.91755 * 10 7 6 37 37 H 1.08996 * 109.46931 * 54.70205 * 13 11 10 38 38 H 1.08989 * 109.47310 * 174.70901 * 13 11 10 39 39 H 0.96999 * 119.99830 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.00312 * 359.70777 * 23 22 11 41 41 H 1.07996 * 119.99990 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99909 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.99819 * 180.11233 * 26 25 24 44 44 H 1.07995 * 120.00220 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0005 5 16 3.9386 -0.7303 0.0060 6 6 2.2245 -1.1244 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.5976 -2.4794 0.2666 9 6 1.8052 -3.1326 -1.3935 10 7 2.3753 -3.3432 0.9788 11 6 1.5305 -4.4413 1.4672 12 1 0.9201 -4.8220 0.6483 13 6 2.4169 -5.5651 2.0079 14 6 3.2191 -6.1593 0.8790 15 1 3.1648 -5.7259 -0.1087 16 6 4.0226 -7.2563 1.1072 17 7 4.0892 -7.7838 2.3101 18 14 5.0175 -7.9925 -0.2919 19 1 5.9511 -6.9693 -0.8274 20 1 5.7932 -9.1549 0.2104 21 1 4.0998 -8.4383 -1.3709 22 6 0.6346 -3.9344 2.5679 23 6 -0.6799 -4.3566 2.6386 24 6 -1.5016 -3.8921 3.6486 25 6 -1.0092 -3.0043 4.5869 26 6 0.3054 -2.5829 4.5166 27 6 1.1273 -3.0478 3.5069 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.7964 2.1464 -0.0004 32 1 4.3077 1.7824 -0.0010 33 1 1.3481 -2.4740 -2.1321 34 1 2.8636 -3.2564 -1.6229 35 1 1.3119 -4.1042 -1.4183 36 1 2.7154 -2.7807 1.7443 37 1 3.0934 -5.1632 2.7621 38 1 1.7916 -6.3377 2.4552 39 1 4.6542 -8.5558 2.4705 40 1 -1.0660 -5.0460 1.9024 41 1 -2.5286 -4.2216 3.7036 42 1 -1.6511 -2.6418 5.3762 43 1 0.6906 -1.8907 5.2508 44 1 2.1544 -2.7185 3.4521 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:12 Heat of formation + Delta-G solvation = 48.298555 kcal Electronic energy + Delta-G solvation = -24094.677552 eV Core-core repulsion = 20909.916564 eV Total energy + Delta-G solvation = -3184.760988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.40282 -38.43332 -36.30647 -33.38712 -32.08457 -30.65347 -30.42303 -29.10694 -27.95007 -27.01130 -24.48961 -23.09929 -22.35829 -21.86420 -21.08237 -19.65966 -18.20180 -17.30226 -16.62762 -16.03428 -15.34812 -15.03818 -14.78165 -14.43062 -14.34297 -14.10015 -13.77739 -13.27464 -13.08543 -12.91890 -12.67096 -12.58245 -12.13884 -12.06244 -12.03060 -11.83826 -11.75048 -11.53884 -11.14148 -11.00802 -10.92721 -10.75203 -10.58671 -10.54083 -10.38471 -10.08466 -9.59148 -9.03046 -8.61719 -8.48006 -8.25724 -8.20349 -8.15500 -7.77535 -5.87333 -3.85625 1.13112 1.70341 1.71021 1.82931 2.24491 2.76989 3.41413 3.45525 3.48744 4.11703 4.57052 4.66183 4.90404 4.98362 5.17839 5.19379 5.28792 5.38402 5.44196 5.46175 5.49434 5.54649 5.61167 5.66807 5.75066 5.83631 5.85948 5.95058 6.06066 6.10961 6.15830 6.25978 6.33416 6.39797 6.51256 6.60024 6.64113 6.76375 6.77797 6.84127 6.98894 7.32982 7.50576 7.66231 7.94323 8.00552 8.13867 8.57085 9.19825 9.75778 11.24449 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.005684 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.066298 B = 4924.888858 C = 7012.937241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.116 4.116 3 C -0.131 4.131 4 C -0.235 4.235 5 S 0.141 5.859 6 C -0.170 4.170 7 C 0.151 3.849 8 H 0.057 0.943 9 C -0.135 4.135 10 N -0.653 5.653 11 C 0.129 3.871 12 H 0.078 0.922 13 C 0.043 3.957 14 C -0.490 4.490 15 H 0.062 0.938 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.091 4.091 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.136 4.136 26 C -0.118 4.118 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.335 0.665 37 H 0.015 0.985 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 16.595 -1.795 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.162 4.162 4 C -0.371 4.371 5 S 0.407 5.593 6 C -0.288 4.288 7 C 0.040 3.960 8 H 0.075 0.925 9 C -0.193 4.193 10 N -0.284 5.284 11 C 0.020 3.980 12 H 0.096 0.904 13 C 0.006 3.994 14 C -0.529 4.529 15 H 0.080 0.920 16 C -0.148 4.148 17 N -0.543 5.543 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.154 4.154 26 C -0.137 4.137 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.517 15.217 -2.187 16.698 hybrid contribution -1.200 0.925 0.033 1.516 sum -7.717 16.142 -2.154 18.021 Atomic orbital electron populations 1.20480 0.90231 1.02306 1.02053 1.18783 0.97170 0.91592 1.05312 1.19936 0.92911 0.98830 1.04558 1.25685 0.99711 1.00431 1.11259 1.84682 1.05291 0.97903 1.71447 1.24602 0.96289 0.98797 1.09154 1.20048 0.95523 0.85297 0.95124 0.92518 1.21815 1.03126 1.00255 0.94107 1.60900 1.37576 1.12032 1.17937 1.21043 0.92134 0.92342 0.92494 0.90430 1.19073 0.93535 0.90430 0.96379 1.21089 1.24538 1.11302 0.95937 0.92028 1.24995 0.97261 0.97206 0.95311 1.69961 1.40195 1.23643 1.20487 0.86708 0.80373 0.78501 0.82652 1.20344 1.21684 1.20531 1.21175 0.94919 0.95182 0.98046 1.21076 0.93619 0.99957 0.98860 1.21071 0.99432 0.97989 0.95419 1.20998 0.95817 0.99253 0.99380 1.21040 0.94098 1.00218 0.98300 1.20938 0.99484 0.98093 0.94991 0.91581 0.91911 0.91580 0.85016 0.82405 0.93302 0.91525 0.91788 0.84433 0.96663 0.95911 0.93265 0.86284 0.86691 0.86846 0.86710 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.59 36.00 0.35 -0.65 16 2 C -0.12 -1.49 5.80 -106.25 -0.62 -2.10 16 3 C -0.13 -1.54 9.98 -41.21 -0.41 -1.95 16 4 C -0.23 -2.75 11.23 29.04 0.33 -2.43 16 5 S 0.14 1.96 23.08 -107.50 -2.48 -0.52 16 6 C -0.17 -2.44 5.06 -36.00 -0.18 -2.62 16 7 C 0.15 2.34 2.54 -68.87 -0.17 2.17 16 8 H 0.06 0.87 6.04 -51.93 -0.31 0.56 16 9 C -0.13 -2.08 9.37 37.16 0.35 -1.73 16 10 N -0.65 -11.83 5.61 -102.17 -0.57 -12.41 16 11 C 0.13 2.53 2.00 -68.86 -0.14 2.40 16 12 H 0.08 1.53 7.11 -51.93 -0.37 1.16 16 13 C 0.04 1.08 4.63 -27.88 -0.13 0.95 16 14 C -0.49 -13.42 8.84 -34.44 -0.30 -13.73 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.09 -1.59 4.48 -104.62 -0.47 -2.06 16 23 C -0.12 -1.85 9.67 -39.58 -0.38 -2.24 16 24 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 25 C -0.14 -1.83 10.05 -39.58 -0.40 -2.23 16 26 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 27 C -0.12 -1.91 9.14 -39.58 -0.36 -2.28 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.02 7.55 -51.93 -0.39 0.63 16 36 H 0.34 5.98 5.94 -39.29 -0.23 5.74 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.62 8.14 -51.94 -0.42 0.20 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.12 1.92 6.51 -52.49 -0.34 1.57 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -30.03 374.08 -11.77 -41.80 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.62 Total: 6.26 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -3.44 Total: -31.30 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.16 Total: -38.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.03 -11.77 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.095 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds