Wall clock time and date at job start Tue Mar 31 2020 10:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08990 * 109.47521 * 14.99796 * 7 6 2 9 9 C 1.53004 * 109.47126 * 254.99687 * 7 6 2 10 10 N 1.46902 * 109.46887 * 135.00010 * 7 6 2 11 11 C 1.46903 * 110.99882 * 204.99394 * 10 7 6 12 12 H 1.09001 * 109.46751 * 35.00601 * 11 10 7 13 13 C 1.53003 * 109.46636 * 154.99684 * 11 10 7 14 14 C 1.50698 * 109.47447 * 295.00208 * 13 11 10 15 15 H 1.07994 * 120.00209 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99595 * 180.02562 * 14 13 11 17 17 N 1.31505 * 120.00474 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99319 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47287 * 90.00325 * 18 16 14 20 20 H 1.48507 * 109.46841 * 209.99666 * 18 16 14 21 21 H 1.48497 * 109.47540 * 329.99928 * 18 16 14 22 22 C 1.50695 * 109.47663 * 274.99997 * 11 10 7 23 23 C 1.38237 * 119.99962 * 319.72973 * 22 11 10 24 24 C 1.38230 * 120.00073 * 179.80583 * 23 22 11 25 25 C 1.38232 * 119.99865 * 0.39738 * 24 23 22 26 26 C 1.38232 * 120.00243 * 359.85738 * 25 24 23 27 27 C 1.38231 * 120.00058 * 139.99752 * 22 11 10 28 28 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 31 31 H 1.08005 * 122.53821 * 359.95765 * 3 2 1 32 32 H 1.07994 * 125.20325 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46951 * 59.99965 * 9 7 6 34 34 H 1.08992 * 109.47036 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47124 * 300.00288 * 9 7 6 36 36 H 1.00897 * 111.00113 * 81.04640 * 10 7 6 37 37 H 1.09000 * 109.46854 * 55.00636 * 13 11 10 38 38 H 1.09007 * 109.46486 * 175.00032 * 13 11 10 39 39 H 0.96998 * 120.00412 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99929 * 359.97438 * 23 22 11 41 41 H 1.08002 * 120.00327 * 180.22977 * 24 23 22 42 42 H 1.08002 * 120.00104 * 179.83112 * 25 24 23 43 43 H 1.08002 * 120.00474 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.00036 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5975 -2.4807 -0.2543 9 6 1.8055 -3.1259 1.4086 10 7 2.3750 -3.3480 -0.9629 11 6 1.5392 -4.4640 -1.4256 12 1 0.4998 -4.1406 -1.4815 13 6 2.0090 -4.9126 -2.8109 14 6 1.7775 -3.8027 -3.8037 15 1 1.3395 -2.8705 -3.4791 16 6 2.1248 -3.9776 -5.1265 17 7 2.6577 -5.1130 -5.5219 18 14 1.8385 -2.6015 -6.3569 19 1 3.0401 -1.7310 -6.4145 20 1 1.5839 -3.1831 -7.6995 21 1 0.6639 -1.7967 -5.9352 22 6 1.6562 -5.6139 -0.4587 23 6 2.8836 -5.9313 0.0925 24 6 2.9902 -6.9836 0.9825 25 6 1.8710 -7.7236 1.3151 26 6 0.6447 -7.4096 0.7599 27 6 0.5373 -6.3548 -0.1272 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.7964 2.1464 -0.0007 32 1 4.3077 1.7823 0.0002 33 1 1.2703 -2.5108 2.1321 34 1 1.3930 -4.1347 1.4132 35 1 2.8618 -3.1643 1.6752 36 1 3.2455 -3.6834 -0.5786 37 1 3.0718 -5.1516 -2.7743 38 1 1.4481 -5.7961 -3.1162 39 1 2.9024 -5.2358 -6.4525 40 1 3.7586 -5.3554 -0.1701 41 1 3.9484 -7.2293 1.4160 42 1 1.9548 -8.5475 2.0084 43 1 -0.2297 -7.9880 1.0193 44 1 -0.4209 -6.1092 -0.5608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:15 Heat of formation + Delta-G solvation = 50.508538 kcal Electronic energy + Delta-G solvation = -24055.511448 eV Core-core repulsion = 20870.846292 eV Total energy + Delta-G solvation = -3184.665156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.50253 -38.30611 -36.35889 -33.43526 -32.03473 -30.67721 -30.29936 -29.30733 -27.71053 -26.91197 -24.45777 -23.16287 -22.39700 -21.88225 -21.10982 -19.85135 -18.12855 -17.12306 -16.65861 -16.04288 -15.26882 -14.96544 -14.83171 -14.45919 -14.25020 -13.94616 -13.61902 -13.47424 -13.08427 -12.92325 -12.65602 -12.51102 -12.41435 -12.15803 -11.97106 -11.85513 -11.64715 -11.51385 -11.11387 -11.09457 -10.98705 -10.75508 -10.59606 -10.51856 -10.29326 -10.14903 -9.65015 -9.01257 -8.64115 -8.33055 -8.23755 -8.18973 -8.02027 -7.75638 -5.86930 -3.84837 1.30425 1.67845 1.68708 1.96439 2.35281 2.94232 3.41210 3.46958 3.50741 4.09136 4.58098 4.66619 5.02131 5.11462 5.15527 5.17945 5.27321 5.32887 5.43278 5.45756 5.50540 5.54383 5.60717 5.68248 5.80272 5.80794 5.83430 5.97409 5.99326 6.07682 6.14215 6.25571 6.28678 6.31902 6.35956 6.68136 6.73814 6.75632 6.77437 6.80791 6.96153 7.30162 7.47996 7.64662 7.93732 7.98557 8.13617 8.56797 9.20156 9.76576 11.24920 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.006741 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.579769 B = 4152.638834 C = 6855.988681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.123 4.123 3 C -0.127 4.127 4 C -0.232 4.232 5 S 0.114 5.886 6 C -0.136 4.136 7 C 0.149 3.851 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.650 5.650 11 C 0.131 3.869 12 H 0.076 0.924 13 C 0.043 3.957 14 C -0.488 4.488 15 H 0.060 0.940 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.889 3.111 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.087 4.087 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.120 4.120 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.334 0.666 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.257 0.743 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 4.487 16.536 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.158 4.158 4 C -0.368 4.368 5 S 0.380 5.620 6 C -0.254 4.254 7 C 0.037 3.963 8 H 0.111 0.889 9 C -0.238 4.238 10 N -0.280 5.280 11 C 0.021 3.979 12 H 0.094 0.906 13 C 0.005 3.995 14 C -0.526 4.526 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.543 5.543 18 Si 0.717 3.283 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.155 4.155 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.409 3.979 15.817 16.314 hybrid contribution -1.177 0.996 -0.114 1.546 sum -1.586 4.975 15.703 16.548 Atomic orbital electron populations 1.20469 0.90260 1.01911 1.02335 1.18719 0.97185 0.91587 1.06057 1.19922 0.92883 0.98844 1.04132 1.25492 0.99642 0.99505 1.12164 1.84176 1.06382 0.99448 1.72013 1.24356 0.95505 0.98428 1.07142 1.20088 0.98178 0.87379 0.90640 0.88860 1.22633 1.02032 1.01578 0.97575 1.60743 1.06031 1.22847 1.38403 1.21035 0.97153 0.84852 0.94831 0.90598 1.19090 0.96728 0.96337 0.87300 1.21092 1.39406 1.00050 0.92084 0.92219 1.24969 0.95869 0.95386 0.98487 1.69961 1.43765 1.24222 1.16363 0.86649 0.78486 0.82496 0.80643 1.20885 1.21643 1.20075 1.21139 0.93083 0.98576 0.96109 1.20944 0.97320 0.97954 0.97436 1.21042 0.98214 0.96006 0.98370 1.21000 0.93146 1.00163 1.01197 1.21074 0.97373 0.97586 0.97798 1.21067 0.98559 0.96030 0.98035 0.91210 0.92101 0.91844 0.85015 0.82532 0.92557 0.91418 0.92648 0.84559 0.96286 0.96227 0.93327 0.86367 0.86660 0.86843 0.86693 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.60 36.01 0.35 -0.76 16 2 C -0.12 -1.78 5.80 -106.25 -0.62 -2.39 16 3 C -0.13 -1.68 9.98 -41.21 -0.41 -2.10 16 4 C -0.23 -3.06 11.23 29.04 0.33 -2.74 16 5 S 0.11 1.67 23.17 -107.50 -2.49 -0.82 16 6 C -0.14 -2.09 5.41 -36.00 -0.19 -2.29 16 7 C 0.15 2.29 2.70 -68.86 -0.19 2.10 16 8 H 0.09 1.46 5.93 -51.93 -0.31 1.15 16 9 C -0.18 -2.37 8.60 37.16 0.32 -2.05 16 10 N -0.65 -11.73 5.60 -102.17 -0.57 -12.31 16 11 C 0.13 2.53 2.17 -68.86 -0.15 2.38 16 12 H 0.08 1.48 7.29 -51.93 -0.38 1.10 16 13 C 0.04 1.07 4.63 -27.88 -0.13 0.94 16 14 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.09 -1.46 2.92 -104.63 -0.31 -1.77 16 23 C -0.12 -1.85 8.43 -39.58 -0.33 -2.18 16 24 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 25 C -0.14 -1.78 10.05 -39.59 -0.40 -2.18 16 26 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 27 C -0.12 -1.82 9.66 -39.58 -0.38 -2.20 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.73 6.93 -51.93 -0.36 0.37 16 31 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.93 5.94 -51.93 -0.31 0.62 16 35 H 0.05 0.72 8.13 -51.92 -0.42 0.30 16 36 H 0.33 5.77 6.10 -39.29 -0.24 5.53 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.12 1.83 6.53 -52.49 -0.34 1.49 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -30.73 370.40 -11.63 -42.36 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.55 Total: 6.17 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -3.31 Total: -31.71 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.16 Total: -38.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.73 -11.63 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.867 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds