Wall clock time and date at job start Tue Mar 31 2020 10:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08990 * 109.47521 * 14.99796 * 7 6 2 9 9 C 1.53004 * 109.47126 * 254.99687 * 7 6 2 10 10 N 1.46902 * 109.46887 * 135.00010 * 7 6 2 11 11 C 1.46903 * 110.99882 * 204.99394 * 10 7 6 12 12 H 1.09001 * 109.46751 * 35.00601 * 11 10 7 13 13 C 1.53003 * 109.46636 * 154.99684 * 11 10 7 14 14 C 1.50698 * 109.47447 * 295.00208 * 13 11 10 15 15 H 1.07994 * 120.00209 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99595 * 180.02562 * 14 13 11 17 17 N 1.31505 * 120.00474 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99319 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47287 * 90.00325 * 18 16 14 20 20 H 1.48507 * 109.46841 * 209.99666 * 18 16 14 21 21 H 1.48497 * 109.47540 * 329.99928 * 18 16 14 22 22 C 1.50695 * 109.47663 * 274.99997 * 11 10 7 23 23 C 1.38237 * 119.99962 * 319.72973 * 22 11 10 24 24 C 1.38230 * 120.00073 * 179.80583 * 23 22 11 25 25 C 1.38232 * 119.99865 * 0.39738 * 24 23 22 26 26 C 1.38232 * 120.00243 * 359.85738 * 25 24 23 27 27 C 1.38231 * 120.00058 * 139.99752 * 22 11 10 28 28 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 31 31 H 1.08005 * 122.53821 * 359.95765 * 3 2 1 32 32 H 1.07994 * 125.20325 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46951 * 59.99965 * 9 7 6 34 34 H 1.08992 * 109.47036 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47124 * 300.00288 * 9 7 6 36 36 H 1.00897 * 111.00113 * 81.04640 * 10 7 6 37 37 H 1.09000 * 109.46854 * 55.00636 * 13 11 10 38 38 H 1.09007 * 109.46486 * 175.00032 * 13 11 10 39 39 H 0.96998 * 120.00412 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99929 * 359.97438 * 23 22 11 41 41 H 1.08002 * 120.00327 * 180.22977 * 24 23 22 42 42 H 1.08002 * 120.00104 * 179.83112 * 25 24 23 43 43 H 1.08002 * 120.00474 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.00036 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5975 -2.4807 -0.2543 9 6 1.8055 -3.1259 1.4086 10 7 2.3750 -3.3480 -0.9629 11 6 1.5392 -4.4640 -1.4256 12 1 0.4998 -4.1406 -1.4815 13 6 2.0090 -4.9126 -2.8109 14 6 1.7775 -3.8027 -3.8037 15 1 1.3395 -2.8705 -3.4791 16 6 2.1248 -3.9776 -5.1265 17 7 2.6577 -5.1130 -5.5219 18 14 1.8385 -2.6015 -6.3569 19 1 3.0401 -1.7310 -6.4145 20 1 1.5839 -3.1831 -7.6995 21 1 0.6639 -1.7967 -5.9352 22 6 1.6562 -5.6139 -0.4587 23 6 2.8836 -5.9313 0.0925 24 6 2.9902 -6.9836 0.9825 25 6 1.8710 -7.7236 1.3151 26 6 0.6447 -7.4096 0.7599 27 6 0.5373 -6.3548 -0.1272 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.7964 2.1464 -0.0007 32 1 4.3077 1.7823 0.0002 33 1 1.2703 -2.5108 2.1321 34 1 1.3930 -4.1347 1.4132 35 1 2.8618 -3.1643 1.6752 36 1 3.2455 -3.6834 -0.5786 37 1 3.0718 -5.1516 -2.7743 38 1 1.4481 -5.7961 -3.1162 39 1 2.9024 -5.2358 -6.4525 40 1 3.7586 -5.3554 -0.1701 41 1 3.9484 -7.2293 1.4160 42 1 1.9548 -8.5475 2.0084 43 1 -0.2297 -7.9880 1.0193 44 1 -0.4209 -6.1092 -0.5608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:14 Heat of formation + Delta-G solvation = 35.129172 kcal Electronic energy + Delta-G solvation = -24056.178348 eV Core-core repulsion = 20870.846292 eV Total energy + Delta-G solvation = -3185.332055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74439 -39.38700 -37.63315 -35.24219 -33.70085 -31.79981 -31.36094 -30.70959 -29.35851 -27.97110 -26.21407 -24.25803 -23.75175 -23.29421 -22.26449 -21.27332 -19.27947 -18.57873 -18.02633 -17.64478 -16.57878 -16.38371 -16.21204 -15.95719 -15.47666 -15.13043 -14.75485 -14.67149 -14.29855 -14.20601 -14.15417 -13.80824 -13.68586 -13.58491 -13.33798 -13.00669 -12.88163 -12.73070 -12.67494 -12.56172 -12.35781 -12.26057 -12.17347 -11.93773 -11.73670 -11.50544 -11.40935 -11.11801 -10.49647 -9.76734 -9.50640 -9.39274 -9.20581 -9.05633 -8.09887 -6.14489 0.21329 0.52671 0.55328 0.87371 1.27043 1.39444 1.41246 1.51111 1.87945 2.46199 2.94578 3.21600 3.37582 3.82910 3.99362 4.01383 4.14467 4.20465 4.21148 4.31813 4.33127 4.52449 4.56873 4.61241 4.69836 4.71246 4.77593 4.82789 4.88247 4.91880 5.03003 5.14021 5.17083 5.20089 5.20355 5.24922 5.48468 5.59791 5.63023 5.65028 5.65574 5.69673 5.77951 5.89176 6.17919 6.29192 6.42483 6.58733 6.98653 7.50851 9.02097 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.006741 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.579769 B = 4152.638834 C = 6855.988681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.135 4.135 4 C -0.225 4.225 5 S 0.082 5.918 6 C -0.162 4.162 7 C 0.156 3.844 8 H 0.086 0.914 9 C -0.165 4.165 10 N -0.666 5.666 11 C 0.149 3.851 12 H 0.068 0.932 13 C 0.054 3.946 14 C -0.494 4.494 15 H 0.056 0.944 16 C -0.002 4.002 17 N -0.939 5.939 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.105 4.105 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.119 4.119 27 C -0.132 4.132 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.335 0.665 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.258 0.742 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 5.344 18.255 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C -0.166 4.166 4 C -0.360 4.360 5 S 0.348 5.652 6 C -0.280 4.280 7 C 0.044 3.956 8 H 0.104 0.896 9 C -0.224 4.224 10 N -0.297 5.297 11 C 0.039 3.961 12 H 0.086 0.914 13 C 0.016 3.984 14 C -0.532 4.532 15 H 0.074 0.926 16 C -0.198 4.198 17 N -0.581 5.581 18 Si 0.779 3.221 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.151 4.151 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.176 0.824 32 H 0.200 0.800 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.103 4.845 17.553 18.243 hybrid contribution -0.955 0.722 -0.601 1.339 sum -2.058 5.568 16.952 17.961 Atomic orbital electron populations 1.20519 0.88905 1.03333 1.02179 1.19131 0.98407 0.91694 1.04786 1.20239 0.92918 0.99629 1.03790 1.25841 1.00356 0.98793 1.11051 1.84246 1.06715 1.01516 1.72768 1.24411 0.95824 0.98618 1.09129 1.20004 0.97311 0.87249 0.91012 0.89570 1.22470 1.02160 1.01279 0.96485 1.60591 1.06332 1.22622 1.40128 1.20491 0.96348 0.86544 0.92738 0.91366 1.18857 0.94339 0.94549 0.90640 1.21405 1.38561 1.00401 0.92863 0.92579 1.25793 0.95818 0.97670 1.00568 1.70090 1.45045 1.26195 1.16768 0.85637 0.78564 0.79619 0.78327 1.20642 1.21047 1.19073 1.20850 0.94405 0.98536 0.96930 1.20984 0.96572 0.99003 0.98408 1.21352 0.99857 0.95052 0.97500 1.21428 0.92371 1.00296 1.00740 1.21411 0.98861 0.96747 0.96621 1.21216 0.98195 0.96761 0.98921 0.92025 0.89667 0.91524 0.82371 0.79956 0.91184 0.91874 0.92658 0.84418 0.99312 0.99228 0.93306 0.87231 0.84231 0.83477 0.83837 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.60 71.24 0.68 -1.38 16 2 C -0.13 -3.52 5.80 -20.92 -0.12 -3.64 16 3 C -0.14 -3.31 9.98 21.22 0.21 -3.10 16 4 C -0.23 -5.53 11.23 66.72 0.75 -4.78 16 5 S 0.08 2.40 23.17 -56.49 -1.31 1.09 16 6 C -0.16 -4.95 5.41 24.59 0.13 -4.82 16 7 C 0.16 4.84 2.70 44.17 0.12 4.96 16 8 H 0.09 2.75 5.93 -2.39 -0.01 2.74 16 9 C -0.16 -4.30 8.60 71.98 0.62 -3.68 16 10 N -0.67 -25.01 5.60 -477.16 -2.67 -27.68 16 11 C 0.15 6.03 2.17 44.17 0.10 6.12 16 12 H 0.07 2.80 7.29 -2.39 -0.02 2.79 16 13 C 0.05 2.83 4.63 29.85 0.14 2.97 16 14 C -0.49 -28.41 8.84 25.60 0.23 -28.18 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 18 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.11 -3.63 2.92 -19.87 -0.06 -3.69 16 23 C -0.13 -4.15 8.43 22.27 0.19 -3.97 16 24 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 27 C -0.13 -4.04 9.66 22.27 0.21 -3.83 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.07 1.45 6.93 -2.38 -0.02 1.44 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.71 5.94 -2.39 -0.01 1.69 16 35 H 0.05 1.43 8.13 -2.38 -0.02 1.41 16 36 H 0.34 12.18 6.10 -89.70 -0.55 11.64 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.11 3.57 6.53 -2.91 -0.02 3.55 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.12 3.52 8.04 -2.91 -0.02 3.50 16 Total: -1.00 -68.05 370.40 3.11 -64.94 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.44 Total: 26.48 kcal Atomic # 6 Polarization: -59.38 SS G_CDS: 4.33 Total: -55.05 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.39 Total: -85.98 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.31 Total: 1.09 kcal Total: -68.05 3.11 -64.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.074 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds