Wall clock time and date at job start Tue Mar 31 2020 10:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38426 * 122.54247 * 2 1 4 4 C 1.33382 * 114.92583 * 180.02562 * 3 2 1 5 5 S 1.75890 * 109.59433 * 359.75541 * 4 3 2 6 6 C 1.33388 * 122.54178 * 180.02562 * 2 1 3 7 7 C 1.50700 * 125.20436 * 359.96054 * 6 2 1 8 8 H 1.09006 * 109.47129 * 344.99561 * 7 6 2 9 9 C 1.52995 * 109.47324 * 104.99428 * 7 6 2 10 10 N 1.46894 * 109.47132 * 225.00168 * 7 6 2 11 11 C 1.46903 * 111.00244 * 154.99828 * 10 7 6 12 12 H 1.09003 * 109.47067 * 324.99497 * 11 10 7 13 13 C 1.53001 * 109.47111 * 204.99820 * 11 10 7 14 14 C 1.50695 * 109.47420 * 64.99606 * 13 11 10 15 15 H 1.08007 * 119.99727 * 0.02562 * 14 13 11 16 16 C 1.37876 * 120.00478 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99649 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00185 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46579 * 120.00258 * 18 16 14 21 21 H 1.48496 * 109.47169 * 239.99673 * 18 16 14 22 22 C 1.50700 * 109.47257 * 84.99448 * 11 10 7 23 23 C 1.38231 * 119.99825 * 39.86905 * 22 11 10 24 24 C 1.38243 * 120.00070 * 180.02562 * 23 22 11 25 25 C 1.38235 * 119.99602 * 0.07188 * 24 23 22 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00292 * 220.00043 * 22 11 10 28 28 H 1.08995 * 109.46733 * 269.97486 * 1 2 3 29 29 H 1.08994 * 109.46972 * 29.97897 * 1 2 3 30 30 H 1.09005 * 109.46577 * 149.97716 * 1 2 3 31 31 H 1.08003 * 122.53491 * 0.04314 * 3 2 1 32 32 H 1.08003 * 125.20305 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47294 * 300.00298 * 9 7 6 34 34 H 1.08999 * 109.46998 * 60.00679 * 9 7 6 35 35 H 1.09006 * 109.47193 * 179.97438 * 9 7 6 36 36 H 1.00908 * 110.99952 * 278.94417 * 10 7 6 37 37 H 1.08994 * 109.46962 * 185.00005 * 13 11 10 38 38 H 1.09004 * 109.46975 * 304.99816 * 13 11 10 39 39 H 0.96994 * 120.00198 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00367 * 0.10906 * 23 22 11 41 41 H 1.08000 * 119.99728 * 180.34119 * 24 23 22 42 42 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 44 44 H 1.08007 * 119.99474 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9387 -0.7305 0.0060 6 6 2.2245 -1.1245 -0.0005 7 6 1.6538 -2.5192 -0.0003 8 1 0.5976 -2.4796 0.2664 9 6 1.8052 -3.1325 -1.3937 10 7 2.3753 -3.3433 0.9786 11 6 1.5397 -4.4571 1.4469 12 1 0.5002 -4.1335 1.5015 13 6 2.0097 -4.8992 2.8341 14 6 1.7786 -3.7846 3.8217 15 1 1.3398 -2.8541 3.4928 16 6 2.1262 -3.9531 5.1452 17 7 2.6600 -5.0863 5.5458 18 14 1.8390 -2.5717 6.3695 19 1 1.2304 -1.4106 5.6719 20 1 0.9228 -3.0415 7.4397 21 1 3.1348 -2.1654 6.9703 22 6 1.6564 -5.6116 0.4853 23 6 2.8820 -5.9264 -0.0711 24 6 2.9891 -6.9851 -0.9536 25 6 1.8702 -7.7280 -1.2807 26 6 0.6444 -7.4126 -0.7250 27 6 0.5374 -6.3541 0.1576 28 1 -0.3632 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.7965 2.1464 0.0007 32 1 4.3078 1.7823 -0.0010 33 1 1.2699 -2.5210 -2.1200 34 1 2.8614 -3.1722 -1.6604 35 1 1.3928 -4.1415 -1.3934 36 1 3.2458 -3.6806 0.5956 37 1 1.4491 -5.7811 3.1438 38 1 3.0726 -5.1383 2.7985 39 1 2.9043 -5.2050 6.4769 40 1 3.7563 -5.3460 0.1846 41 1 3.9477 -7.2344 -1.3840 42 1 1.9538 -8.5548 -1.9704 43 1 -0.2298 -7.9928 -0.9809 44 1 -0.4205 -6.1071 0.5911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:17 Heat of formation + Delta-G solvation = 35.149139 kcal Electronic energy + Delta-G solvation = -24058.190595 eV Core-core repulsion = 20872.859406 eV Total energy + Delta-G solvation = -3185.331190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74615 -39.38644 -37.63331 -35.24322 -33.70042 -31.79985 -31.36079 -30.71169 -29.35959 -27.97157 -26.21656 -24.25873 -23.75121 -23.29575 -22.26338 -21.27306 -19.28033 -18.58107 -18.02803 -17.64701 -16.57812 -16.38244 -16.21193 -15.95634 -15.47757 -15.13036 -14.75759 -14.67233 -14.30587 -14.20578 -14.15420 -13.80634 -13.68550 -13.58606 -13.34081 -13.00724 -12.89227 -12.71825 -12.67129 -12.56783 -12.35740 -12.26157 -12.17646 -11.93309 -11.73841 -11.50801 -11.40909 -11.10420 -10.50154 -9.76712 -9.50694 -9.39278 -9.20565 -9.05573 -8.10135 -6.14649 0.21312 0.52715 0.55288 0.87450 1.26950 1.38643 1.40311 1.52915 1.87904 2.46162 2.94583 3.21461 3.37519 3.82825 3.99276 4.01351 4.14429 4.20473 4.21109 4.31808 4.33122 4.52429 4.56850 4.61196 4.69772 4.71167 4.77568 4.82807 4.88144 4.91844 5.02941 5.13930 5.17064 5.20061 5.20331 5.24917 5.48498 5.59730 5.63019 5.64972 5.65566 5.69626 5.77919 5.89241 6.17903 6.29143 6.42443 6.58723 6.98760 7.50795 9.02085 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007459 B = 0.006744 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.905376 B = 4150.683409 C = 6854.567620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.135 4.135 4 C -0.225 4.225 5 S 0.083 5.917 6 C -0.162 4.162 7 C 0.156 3.844 8 H 0.086 0.914 9 C -0.165 4.165 10 N -0.666 5.666 11 C 0.149 3.851 12 H 0.068 0.932 13 C 0.053 3.947 14 C -0.492 4.492 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.105 4.105 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.132 4.132 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.335 0.665 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.258 0.742 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 5.253 -18.280 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C -0.166 4.166 4 C -0.360 4.360 5 S 0.348 5.652 6 C -0.280 4.280 7 C 0.044 3.956 8 H 0.104 0.896 9 C -0.224 4.224 10 N -0.297 5.297 11 C 0.039 3.961 12 H 0.086 0.914 13 C 0.016 3.984 14 C -0.531 4.531 15 H 0.074 0.926 16 C -0.199 4.199 17 N -0.581 5.581 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.210 1.210 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.151 4.151 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.176 0.824 32 H 0.201 0.799 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.090 4.763 -17.578 18.245 hybrid contribution -0.966 0.713 0.608 1.345 sum -2.056 5.476 -16.971 17.950 Atomic orbital electron populations 1.20516 0.88911 1.03341 1.02160 1.19132 0.98409 0.91700 1.04798 1.20238 0.92931 0.99626 1.03799 1.25843 1.00349 0.98807 1.11040 1.84242 1.06692 1.01506 1.72762 1.24414 0.95840 0.98626 1.09112 1.20002 0.97304 0.87271 0.90995 0.89584 1.22468 1.02165 1.01252 0.96506 1.60590 1.06343 1.22909 1.39840 1.20491 0.96350 0.86514 0.92763 0.91360 1.18861 0.94354 0.94577 0.90633 1.21434 1.38390 1.00378 0.92891 0.92585 1.25797 0.95822 0.97725 1.00553 1.70101 1.45097 1.26375 1.16568 0.85578 0.77617 0.79896 0.79020 1.19159 1.20620 1.21039 1.20851 0.94421 0.98543 0.96907 1.20986 0.96593 0.98987 0.98407 1.21356 0.99847 0.94976 0.97578 1.21428 0.92382 1.00305 1.00727 1.21409 0.98865 0.96721 0.96637 1.21217 0.98181 0.96752 0.98949 0.92055 0.89666 0.91506 0.82385 0.79945 0.91187 0.92652 0.91870 0.84407 0.99218 0.99297 0.93314 0.87220 0.84230 0.83480 0.83837 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.59 71.24 0.68 -1.38 16 2 C -0.13 -3.54 5.80 -20.92 -0.12 -3.66 16 3 C -0.14 -3.32 9.98 21.22 0.21 -3.11 16 4 C -0.23 -5.54 11.23 66.72 0.75 -4.79 16 5 S 0.08 2.41 23.17 -56.49 -1.31 1.10 16 6 C -0.16 -4.96 5.41 24.59 0.13 -4.83 16 7 C 0.16 4.85 2.70 44.17 0.12 4.97 16 8 H 0.09 2.75 5.94 -2.38 -0.01 2.74 16 9 C -0.16 -4.30 8.58 71.98 0.62 -3.69 16 10 N -0.67 -25.02 5.60 -477.16 -2.67 -27.69 16 11 C 0.15 6.03 2.17 44.17 0.10 6.12 16 12 H 0.07 2.80 7.29 -2.39 -0.02 2.79 16 13 C 0.05 2.81 4.63 29.85 0.14 2.95 16 14 C -0.49 -28.33 8.84 25.60 0.23 -28.10 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.94 -58.59 13.29 21.45 0.28 -58.31 16 18 Si 0.95 46.51 29.54 68.60 2.03 48.53 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 22 C -0.11 -3.63 2.94 -19.87 -0.06 -3.69 16 23 C -0.13 -4.15 8.40 22.27 0.19 -3.96 16 24 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 27 C -0.13 -4.04 9.65 22.27 0.21 -3.83 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.07 1.46 6.94 -2.38 -0.02 1.44 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.06 1.71 5.93 -2.38 -0.01 1.69 16 36 H 0.34 12.18 6.09 -89.69 -0.55 11.63 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.11 3.56 6.51 -2.91 -0.02 3.54 16 41 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.12 3.52 8.04 -2.91 -0.02 3.50 16 Total: -1.00 -68.13 370.33 3.11 -65.03 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.44 Total: 26.40 kcal Atomic # 6 Polarization: -59.40 SS G_CDS: 4.33 Total: -55.07 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.39 Total: -86.00 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -68.13 3.11 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.176 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds