Wall clock time and date at job start Tue Mar 31 2020 10:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38285 * 126.31808 * 2 1 4 4 C 1.46968 * 126.43926 * 0.02562 * 3 2 1 5 5 C 1.35061 * 119.99823 * 180.20088 * 4 3 2 6 6 C 1.41797 * 120.00169 * 179.97438 * 5 4 3 7 7 O 1.21755 * 119.99480 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00073 * 179.97438 * 6 5 4 9 9 C 1.40067 * 119.99851 * 180.02562 * 8 6 5 10 10 C 1.40424 * 125.97820 * 359.71592 * 9 8 6 11 11 C 1.35234 * 107.86816 * 179.83152 * 10 9 8 12 12 N 1.34972 * 107.86392 * 0.42677 * 11 10 9 13 13 C 1.46494 * 125.97152 * 179.70593 * 12 11 10 14 14 C 1.50704 * 109.47109 * 125.00350 * 13 12 11 15 15 H 1.08003 * 119.99794 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00284 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99548 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99905 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47374 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46920 * 120.00258 * 18 16 14 21 21 H 1.48499 * 109.47194 * 240.00158 * 18 16 14 22 22 N 1.31239 * 125.97701 * 180.02562 * 9 8 6 23 23 C 1.41429 * 107.11900 * 180.16147 * 3 2 1 24 24 N 1.30452 * 108.03730 * 359.60841 * 23 3 2 25 25 N 1.34396 * 126.31583 * 179.73368 * 2 1 3 26 26 C 1.46502 * 125.74775 * 359.95790 * 25 2 1 27 27 H 1.08996 * 109.47049 * 270.29179 * 1 2 3 28 28 H 1.08996 * 109.47001 * 30.29305 * 1 2 3 29 29 H 1.09003 * 109.46647 * 150.28981 * 1 2 3 30 30 H 1.08000 * 120.00488 * 0.20069 * 4 3 2 31 31 H 1.08000 * 119.99688 * 359.97438 * 5 4 3 32 32 H 0.97000 * 119.99717 * 0.02562 * 8 6 5 33 33 H 1.08007 * 126.06598 * 359.97438 * 10 9 8 34 34 H 1.08002 * 126.06601 * 180.15781 * 11 10 9 35 35 H 1.09002 * 109.47602 * 244.99932 * 13 12 11 36 36 H 1.08999 * 109.47360 * 5.00406 * 13 12 11 37 37 H 0.97008 * 119.99115 * 179.97438 * 17 16 14 38 38 H 1.08002 * 125.98469 * 179.87769 * 23 3 2 39 39 H 1.08996 * 109.47283 * 269.99810 * 26 25 2 40 40 H 1.09000 * 109.46930 * 29.99958 * 26 25 2 41 41 H 1.08999 * 109.46751 * 150.00137 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3261 1.1142 0.0000 4 6 1.8905 2.5178 0.0005 5 6 2.8074 3.5095 -0.0036 6 6 2.3872 4.8637 -0.0037 7 8 1.1997 5.1326 0.0005 8 7 3.3022 5.8533 -0.0073 9 6 2.8870 7.1910 -0.0068 10 6 1.5572 7.6421 -0.0084 11 6 1.5777 8.9943 -0.0034 12 7 2.8685 9.3888 -0.0085 13 6 3.3448 10.7741 -0.0118 14 6 4.2830 10.9855 1.1485 15 1 4.5021 10.1696 1.8213 16 6 4.8616 12.2205 1.3511 17 7 4.5943 13.2142 0.5320 18 14 6.0239 12.4826 2.7897 19 1 6.1570 11.2173 3.5555 20 1 7.3566 12.8950 2.2805 21 1 5.4828 13.5439 3.6763 22 7 3.6728 8.2421 -0.0105 23 6 3.6617 0.6491 -0.0038 24 7 3.6353 -0.6551 0.0026 25 7 2.3030 -1.0829 0.0050 26 6 1.8519 -2.4767 0.0124 27 1 -0.3633 0.0052 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5094 30 1 0.8371 2.7564 0.0042 31 1 3.8607 3.2709 -0.0069 32 1 4.2482 5.6390 -0.0103 33 1 0.6746 7.0195 -0.0106 34 1 0.7144 9.6432 -0.0008 35 1 3.8704 10.9755 -0.9453 36 1 2.4952 11.4507 0.0800 37 1 5.0011 14.0832 0.6748 38 1 4.5484 1.2658 -0.0067 39 1 1.7406 -2.8172 1.0418 40 1 0.8929 -2.5509 -0.5005 41 1 2.5864 -3.0990 -0.4987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122231743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:11 Heat of formation + Delta-G solvation = 140.274758 kcal Electronic energy + Delta-G solvation = -23975.172156 eV Core-core repulsion = 20280.399092 eV Total energy + Delta-G solvation = -3694.773064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66966 -40.59266 -39.24079 -34.93048 -34.48341 -33.58824 -33.29214 -31.70059 -30.78255 -29.23553 -27.65380 -27.23845 -26.48074 -24.21913 -22.78503 -21.72200 -20.69792 -20.07725 -19.48364 -19.03249 -16.99518 -16.93028 -16.54262 -16.35636 -16.18134 -15.24395 -14.95583 -14.85617 -14.62478 -14.19169 -13.90477 -13.79169 -13.66875 -13.58977 -13.07911 -12.97026 -12.71814 -12.42358 -12.29598 -12.17393 -12.14517 -11.73058 -11.02133 -10.96714 -10.84461 -10.59609 -10.31625 -10.22479 -9.92920 -9.78221 -9.50464 -9.41916 -8.60582 -8.23464 -8.01717 -7.35434 -6.21180 -4.25862 0.67604 1.58121 1.97826 2.53900 2.89083 3.01494 3.24763 3.32117 3.37404 3.39851 3.94562 3.97626 4.08170 4.10755 4.35966 4.45806 4.55883 4.66406 4.79624 4.86625 4.95425 4.98716 5.14018 5.17988 5.31917 5.34923 5.50020 5.64432 5.89795 6.08263 6.20005 6.26702 6.40272 6.48930 6.58559 6.76338 6.92152 7.10295 7.24205 7.53111 7.68272 7.76513 7.94555 8.11342 8.43135 8.71753 8.85283 9.39666 10.87511 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.001999 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.798841 B =14004.972065 C =14681.819394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.117 3.883 3 C -0.237 4.237 4 C 0.043 3.957 5 C -0.237 4.237 6 C 0.559 3.441 7 O -0.534 6.534 8 N -0.629 5.629 9 C 0.259 3.741 10 C -0.286 4.286 11 C 0.049 3.951 12 N -0.320 5.320 13 C 0.258 3.742 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 N -0.307 5.307 23 C 0.079 3.921 24 N -0.301 5.301 25 N -0.365 5.365 26 C 0.096 3.904 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.411 0.589 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.266 0.734 38 H 0.191 0.809 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -29.548 -2.153 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.014 4.014 3 C -0.248 4.248 4 C 0.022 3.978 5 C -0.259 4.259 6 C 0.350 3.650 7 O -0.412 6.412 8 N -0.275 5.275 9 C 0.005 3.995 10 C -0.318 4.318 11 C -0.101 4.101 12 N -0.102 5.102 13 C 0.140 3.860 14 C -0.565 4.565 15 H 0.088 0.912 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 N -0.138 5.138 23 C -0.107 4.107 24 N -0.120 5.120 25 N -0.145 5.145 26 C -0.045 4.045 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.246 0.754 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.208 0.792 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.229 -29.892 -2.190 30.831 hybrid contribution 0.050 0.666 0.747 1.002 sum -7.179 -29.226 -1.443 30.129 Atomic orbital electron populations 1.20598 0.86476 1.04548 1.04098 1.21719 0.94681 0.86980 0.98039 1.19174 0.92209 0.92835 1.20568 1.21564 0.99707 0.88508 0.88017 1.21521 1.00701 0.91785 1.11888 1.17003 0.85618 0.85513 0.76826 1.90740 1.16609 1.84412 1.49425 1.42425 1.10454 1.02223 1.72429 1.19125 0.92626 0.84546 1.03166 1.21543 0.96894 0.93398 1.19927 1.22560 0.89148 0.95751 1.02636 1.49055 1.02654 1.06682 1.51814 1.19735 0.96709 0.70274 0.99257 1.21313 1.26944 0.96986 1.11255 0.91237 1.24952 0.96696 0.95485 0.97030 1.69936 1.43958 1.02328 1.37183 0.86275 0.80269 0.78263 0.81712 1.19555 1.20720 1.20795 1.77333 1.17848 0.90442 1.28175 1.24162 0.97753 0.91639 0.97184 1.77194 0.95914 1.13597 1.25330 1.48320 1.04138 1.06288 1.55736 1.21942 1.01249 0.77539 1.03777 0.89334 0.88744 0.90681 0.84699 0.85642 0.75415 0.82229 0.81580 0.93743 0.92565 0.92428 0.79241 0.90313 0.89216 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 9.92 36.01 0.36 -0.05 16 2 C 0.12 0.89 7.02 -81.45 -0.57 0.31 16 3 C -0.24 -2.17 6.08 -105.13 -0.64 -2.81 16 4 C 0.04 0.43 9.34 -37.18 -0.35 0.08 16 5 C -0.24 -2.57 9.33 -39.35 -0.37 -2.94 16 6 C 0.56 8.40 7.53 -14.90 -0.11 8.29 16 7 O -0.53 -9.48 13.23 5.14 0.07 -9.41 16 8 N -0.63 -10.20 5.44 -13.70 -0.07 -10.27 16 9 C 0.26 5.37 8.11 -154.46 -1.25 4.12 16 10 C -0.29 -5.85 9.60 -39.83 -0.38 -6.23 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 13 C 0.26 6.67 6.26 -5.19 -0.03 6.63 16 14 C -0.53 -14.87 9.24 -34.44 -0.32 -15.19 16 15 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 18 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 N -0.31 -7.26 12.42 31.43 0.39 -6.87 16 23 C 0.08 0.73 11.39 -16.92 -0.19 0.54 16 24 N -0.30 -3.07 12.49 30.89 0.39 -2.68 16 25 N -0.37 -2.87 3.98 -63.24 -0.25 -3.12 16 26 C 0.10 0.33 11.25 59.85 0.67 1.01 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.38 7.63 -51.93 -0.40 -0.01 16 29 H 0.07 0.16 7.06 -51.93 -0.37 -0.21 16 30 H 0.14 1.32 7.03 -52.49 -0.37 0.95 16 31 H 0.13 1.02 6.93 -52.49 -0.36 0.66 16 32 H 0.41 5.44 8.78 -40.82 -0.36 5.08 16 33 H 0.16 3.15 5.90 -52.48 -0.31 2.84 16 34 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 35 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.19 1.27 7.31 -52.49 -0.38 0.88 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.09 7.02 -51.93 -0.36 -0.27 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -36.28 359.81 -7.04 -43.32 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.99 Total: 3.56 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.48 Total: -3.83 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.96 Total: -55.65 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.28 -7.04 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122231743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.598 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds