Wall clock time and date at job start Tue Mar 31 2020 10:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38285 * 126.31808 * 2 1 4 4 C 1.46968 * 126.43926 * 0.02562 * 3 2 1 5 5 C 1.35061 * 119.99823 * 180.20088 * 4 3 2 6 6 C 1.41797 * 120.00169 * 179.97438 * 5 4 3 7 7 O 1.21755 * 119.99480 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00073 * 179.97438 * 6 5 4 9 9 C 1.40067 * 119.99851 * 180.02562 * 8 6 5 10 10 C 1.40424 * 125.97820 * 359.71592 * 9 8 6 11 11 C 1.35234 * 107.86816 * 179.83152 * 10 9 8 12 12 N 1.34972 * 107.86392 * 0.42677 * 11 10 9 13 13 C 1.46494 * 125.97152 * 179.70593 * 12 11 10 14 14 C 1.50704 * 109.47109 * 125.00350 * 13 12 11 15 15 H 1.08003 * 119.99794 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00284 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99548 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99905 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47374 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46920 * 120.00258 * 18 16 14 21 21 H 1.48499 * 109.47194 * 240.00158 * 18 16 14 22 22 N 1.31239 * 125.97701 * 180.02562 * 9 8 6 23 23 C 1.41429 * 107.11900 * 180.16147 * 3 2 1 24 24 N 1.30452 * 108.03730 * 359.60841 * 23 3 2 25 25 N 1.34396 * 126.31583 * 179.73368 * 2 1 3 26 26 C 1.46502 * 125.74775 * 359.95790 * 25 2 1 27 27 H 1.08996 * 109.47049 * 270.29179 * 1 2 3 28 28 H 1.08996 * 109.47001 * 30.29305 * 1 2 3 29 29 H 1.09003 * 109.46647 * 150.28981 * 1 2 3 30 30 H 1.08000 * 120.00488 * 0.20069 * 4 3 2 31 31 H 1.08000 * 119.99688 * 359.97438 * 5 4 3 32 32 H 0.97000 * 119.99717 * 0.02562 * 8 6 5 33 33 H 1.08007 * 126.06598 * 359.97438 * 10 9 8 34 34 H 1.08002 * 126.06601 * 180.15781 * 11 10 9 35 35 H 1.09002 * 109.47602 * 244.99932 * 13 12 11 36 36 H 1.08999 * 109.47360 * 5.00406 * 13 12 11 37 37 H 0.97008 * 119.99115 * 179.97438 * 17 16 14 38 38 H 1.08002 * 125.98469 * 179.87769 * 23 3 2 39 39 H 1.08996 * 109.47283 * 269.99810 * 26 25 2 40 40 H 1.09000 * 109.46930 * 29.99958 * 26 25 2 41 41 H 1.08999 * 109.46751 * 150.00137 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3261 1.1142 0.0000 4 6 1.8905 2.5178 0.0005 5 6 2.8074 3.5095 -0.0036 6 6 2.3872 4.8637 -0.0037 7 8 1.1997 5.1326 0.0005 8 7 3.3022 5.8533 -0.0073 9 6 2.8870 7.1910 -0.0068 10 6 1.5572 7.6421 -0.0084 11 6 1.5777 8.9943 -0.0034 12 7 2.8685 9.3888 -0.0085 13 6 3.3448 10.7741 -0.0118 14 6 4.2830 10.9855 1.1485 15 1 4.5021 10.1696 1.8213 16 6 4.8616 12.2205 1.3511 17 7 4.5943 13.2142 0.5320 18 14 6.0239 12.4826 2.7897 19 1 6.1570 11.2173 3.5555 20 1 7.3566 12.8950 2.2805 21 1 5.4828 13.5439 3.6763 22 7 3.6728 8.2421 -0.0105 23 6 3.6617 0.6491 -0.0038 24 7 3.6353 -0.6551 0.0026 25 7 2.3030 -1.0829 0.0050 26 6 1.8519 -2.4767 0.0124 27 1 -0.3633 0.0052 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5094 30 1 0.8371 2.7564 0.0042 31 1 3.8607 3.2709 -0.0069 32 1 4.2482 5.6390 -0.0103 33 1 0.6746 7.0195 -0.0106 34 1 0.7144 9.6432 -0.0008 35 1 3.8704 10.9755 -0.9453 36 1 2.4952 11.4507 0.0800 37 1 5.0011 14.0832 0.6748 38 1 4.5484 1.2658 -0.0067 39 1 1.7406 -2.8172 1.0418 40 1 0.8929 -2.5509 -0.5005 41 1 2.5864 -3.0990 -0.4987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122231743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:10 Heat of formation + Delta-G solvation = 116.439808 kcal Electronic energy + Delta-G solvation = -23976.205717 eV Core-core repulsion = 20280.399092 eV Total energy + Delta-G solvation = -3695.806625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29570 -42.13506 -40.57501 -36.24623 -35.39633 -35.22024 -34.18378 -32.88345 -32.02291 -30.90791 -28.82708 -27.94043 -27.60012 -25.45926 -24.38471 -22.77185 -22.00727 -21.28168 -20.51511 -20.01160 -18.67916 -18.18760 -17.97906 -17.39615 -16.86122 -16.68162 -16.40370 -16.09651 -15.63527 -15.42576 -15.29167 -14.74792 -14.35381 -14.23052 -14.20400 -14.00914 -13.77325 -13.64530 -13.48263 -13.27293 -12.93044 -12.90180 -12.84277 -12.71385 -12.29872 -12.02694 -11.61639 -11.56984 -11.35591 -11.31851 -10.84821 -10.71249 -10.35204 -9.71006 -9.14294 -8.81906 -8.32060 -6.46253 -0.12952 0.90507 1.17182 1.37609 1.39039 1.47373 1.52308 1.56554 1.71384 2.13506 2.33832 2.56471 2.71699 2.99199 3.48245 3.64374 3.89019 4.04227 4.07340 4.20725 4.31319 4.31493 4.37827 4.51989 4.64374 4.69013 4.73861 4.83055 4.91582 4.97081 4.97586 5.04479 5.07529 5.20628 5.41677 5.50371 5.56206 5.58224 5.81897 5.98411 6.00274 6.30401 6.40367 6.62089 6.66875 7.09540 7.23656 7.24176 8.75430 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.001999 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.798841 B =14004.972065 C =14681.819394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.129 3.871 3 C -0.267 4.267 4 C 0.073 3.927 5 C -0.258 4.258 6 C 0.561 3.439 7 O -0.565 6.565 8 N -0.626 5.626 9 C 0.266 3.734 10 C -0.293 4.293 11 C 0.054 3.946 12 N -0.345 5.345 13 C 0.272 3.728 14 C -0.547 4.547 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.973 3.027 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.269 1.269 22 N -0.350 5.350 23 C 0.075 3.925 24 N -0.337 5.337 25 N -0.367 5.367 26 C 0.084 3.916 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.423 0.577 33 H 0.169 0.831 34 H 0.201 0.799 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.272 0.728 38 H 0.206 0.794 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 -31.659 -1.534 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.004 4.004 3 C -0.278 4.278 4 C 0.051 3.949 5 C -0.280 4.280 6 C 0.355 3.645 7 O -0.446 6.446 8 N -0.274 5.274 9 C 0.011 3.989 10 C -0.324 4.324 11 C -0.094 4.094 12 N -0.127 5.127 13 C 0.153 3.847 14 C -0.585 4.585 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.797 3.203 19 H -0.200 1.200 20 H -0.198 1.198 21 H -0.194 1.194 22 N -0.181 5.181 23 C -0.111 4.111 24 N -0.156 5.156 25 N -0.146 5.146 26 C -0.055 4.055 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.261 0.739 33 H 0.186 0.814 34 H 0.218 0.782 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.223 0.777 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.053 -32.054 -1.579 33.088 hybrid contribution 0.174 1.038 0.519 1.174 sum -7.879 -31.016 -1.060 32.019 Atomic orbital electron populations 1.20782 0.83893 1.05921 1.05266 1.22279 0.96182 0.86493 0.95430 1.19242 0.92743 0.92806 1.23054 1.21628 0.99502 0.88821 0.84945 1.21398 1.02309 0.89416 1.14835 1.17620 0.84951 0.86453 0.75427 1.90706 1.17855 1.84927 1.51110 1.42590 1.11636 1.00615 1.72595 1.19505 0.92687 0.85811 1.00878 1.21752 0.97108 0.93496 1.20081 1.23179 0.88958 0.96481 1.00781 1.48824 1.03752 1.06059 1.54096 1.19338 0.96166 0.71831 0.97360 1.21435 1.28220 0.96897 1.11936 0.93049 1.25749 0.97968 0.95022 0.99525 1.70008 1.44664 1.02790 1.38450 0.85285 0.78405 0.78080 0.78541 1.19995 1.19815 1.19433 1.77252 1.19123 0.91111 1.30626 1.24514 0.98535 0.91699 0.96367 1.77144 0.97679 1.14105 1.26685 1.48708 1.03480 1.07789 1.54604 1.22329 1.02600 0.75457 1.05113 0.88057 0.88638 0.88117 0.84733 0.83117 0.73928 0.81350 0.78174 0.96095 0.92306 0.91848 0.77723 0.89063 0.86319 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 9.92 71.24 0.71 0.20 16 2 C 0.13 1.66 7.02 42.18 0.30 1.96 16 3 C -0.27 -4.48 6.08 -20.19 -0.12 -4.61 16 4 C 0.07 1.34 9.34 23.83 0.22 1.56 16 5 C -0.26 -5.32 9.33 22.42 0.21 -5.12 16 6 C 0.56 16.58 7.53 85.12 0.64 17.22 16 7 O -0.57 -19.88 13.23 -4.53 -0.06 -19.94 16 8 N -0.63 -20.25 5.44 -315.46 -1.71 -21.96 16 9 C 0.27 11.15 8.11 133.35 1.08 12.23 16 10 C -0.29 -11.95 9.60 22.11 0.21 -11.74 16 11 C 0.05 2.23 11.43 83.52 0.96 3.18 16 12 N -0.35 -16.79 3.67 -351.85 -1.29 -18.08 16 13 C 0.27 14.47 6.26 85.64 0.54 15.00 16 14 C -0.55 -31.54 9.24 25.60 0.24 -31.31 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 16 C 0.02 0.99 5.46 84.65 0.46 1.45 16 17 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 18 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 N -0.35 -16.97 12.42 -54.49 -0.68 -17.64 16 23 C 0.08 1.30 11.39 85.68 0.98 2.27 16 24 N -0.34 -6.47 12.49 -56.18 -0.70 -7.17 16 25 N -0.37 -5.00 3.98 -354.00 -1.41 -6.41 16 26 C 0.08 0.36 11.25 127.77 1.44 1.80 16 27 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.52 7.63 -2.39 -0.02 0.50 16 29 H 0.10 0.01 7.06 -2.39 -0.02 0.00 16 30 H 0.13 2.46 7.03 -2.91 -0.02 2.44 16 31 H 0.15 2.24 6.93 -2.91 -0.02 2.22 16 32 H 0.42 11.16 8.78 -92.71 -0.81 10.35 16 33 H 0.17 6.57 5.90 -2.91 -0.02 6.56 16 34 H 0.20 6.46 8.06 -2.91 -0.02 6.44 16 35 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 37 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 38 H 0.21 2.51 7.31 -2.91 -0.02 2.49 16 39 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.12 -0.20 7.02 -2.39 -0.02 -0.21 16 41 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -79.31 359.81 4.57 -74.74 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.26 Total: 18.50 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 7.85 Total: 4.11 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.51 Total: -123.79 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -79.31 4.57 -74.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122231743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.177 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds