Wall clock time and date at job start Tue Mar 31 2020 11:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46965 * 54.99840 * 3 2 1 5 5 C 1.50695 * 109.46917 * 174.99825 * 3 2 1 6 6 H 1.08005 * 120.00022 * 120.27544 * 5 3 2 7 7 C 1.37878 * 120.00119 * 300.00004 * 5 3 2 8 8 N 1.31511 * 119.99939 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 119.99952 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46925 * 89.99926 * 9 7 5 11 11 H 1.48502 * 109.46779 * 209.99858 * 9 7 5 12 12 H 1.48501 * 109.47020 * 329.99820 * 9 7 5 13 13 N 1.46496 * 109.47104 * 294.99872 * 3 2 1 14 14 C 1.34779 * 119.99904 * 85.00415 * 13 3 2 15 15 O 1.21587 * 119.99842 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99830 * 179.97438 * 14 13 3 17 17 C 1.40079 * 120.00172 * 174.69810 * 16 14 13 18 18 C 1.39364 * 120.41810 * 327.15663 * 17 16 14 19 19 C 1.38333 * 118.41868 * 179.77697 * 18 17 16 20 20 C 1.38946 * 119.18587 * 0.51217 * 19 18 17 21 21 N 1.39919 * 119.61406 * 179.69949 * 20 19 18 22 22 C 1.35817 * 126.09893 * 180.02562 * 21 20 19 23 23 C 1.35306 * 107.61488 * 179.97438 * 22 21 20 24 24 C 1.39924 * 107.96890 * 0.02562 * 23 22 21 25 25 N 1.30842 * 108.36558 * 359.75148 * 24 23 22 26 26 N 1.32282 * 120.77242 * 359.72940 * 20 19 18 27 27 C 1.31855 * 121.72429 * 359.97438 * 26 20 19 28 28 H 1.09005 * 109.47110 * 300.00147 * 1 2 3 29 29 H 1.09006 * 109.47084 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47226 * 240.00080 * 2 1 3 32 32 H 1.09006 * 109.47084 * 120.00005 * 2 1 3 33 33 H 0.97002 * 119.99607 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00117 * 264.99784 * 13 3 2 35 35 H 0.96998 * 120.00352 * 354.70566 * 16 14 13 36 36 H 1.07995 * 120.79196 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.40347 * 180.23600 * 19 18 17 38 38 H 1.07996 * 126.19607 * 359.97438 * 22 21 20 39 39 H 1.07996 * 126.01717 * 179.97438 * 23 22 21 40 40 H 1.08003 * 125.82002 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.63227 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4442 0.1239 6 1 4.1470 1.8927 -0.6501 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3365 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4416 2.1140 2.0850 11 1 6.4395 -0.3100 2.1551 12 1 6.6136 0.8414 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6319 -0.4320 16 7 0.0789 3.2674 -2.5184 17 6 -1.2232 3.7586 -2.6781 18 6 -2.2999 3.1138 -2.0721 19 6 -3.5675 3.6371 -2.2534 20 6 -3.7257 4.7737 -3.0368 21 7 -5.0046 5.3069 -3.2313 22 6 -5.3096 6.4064 -3.9679 23 6 -6.6492 6.5845 -3.9024 24 6 -7.1814 5.5667 -3.1031 25 7 -6.1994 4.7990 -2.7052 26 7 -2.6813 5.3573 -3.6013 27 6 -1.4581 4.8902 -3.4458 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0613 2.9498 34 1 2.2720 2.1231 -1.9978 35 1 0.7240 3.3612 -3.2366 36 1 -2.1478 2.2285 -1.4726 37 1 -4.4243 3.1653 -1.7953 38 1 -4.6096 7.0264 -4.5082 39 1 -7.2092 7.3738 -4.3818 40 1 -8.2254 5.4345 -2.8600 41 1 -0.6297 5.3938 -3.9220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155723176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:22 Heat of formation + Delta-G solvation = 98.563609 kcal Electronic energy + Delta-G solvation = -25171.481646 eV Core-core repulsion = 21474.899851 eV Total energy + Delta-G solvation = -3696.581795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67108 -40.60023 -39.22066 -35.89517 -34.61977 -33.02681 -32.67317 -32.13801 -30.92164 -30.30218 -28.63243 -26.90634 -24.34468 -23.87854 -23.01662 -21.52922 -21.00297 -20.65996 -19.63659 -18.68946 -18.24246 -17.56150 -16.44973 -15.93780 -15.64964 -15.42858 -15.18325 -14.86978 -14.39384 -14.31304 -13.86908 -13.81867 -13.42592 -13.23010 -12.92544 -12.83585 -12.69780 -12.37259 -11.68883 -11.33545 -11.11522 -11.04127 -10.99712 -10.89117 -10.42458 -10.27518 -10.21971 -9.97586 -9.69806 -9.68828 -9.38489 -9.14378 -9.10056 -8.58042 -8.09284 -7.77018 -6.19594 -4.29384 0.58988 1.09643 1.94641 1.99497 2.57760 2.95759 3.19970 3.27378 3.28648 3.50076 3.85424 4.13996 4.25783 4.37951 4.63586 4.75536 4.78137 4.94545 5.10985 5.13045 5.27930 5.46668 5.53303 5.69704 5.75425 6.01965 6.17769 6.32505 6.34738 6.38563 6.56658 6.68483 6.85782 6.96089 7.00433 7.20972 7.23391 7.26690 7.32762 7.56634 7.74983 7.76426 7.86377 8.10183 8.61067 8.72805 9.08501 9.38415 10.85748 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.002438 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.433027 B =11484.024277 C =11952.765480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.574 6.574 16 N -0.690 5.690 17 C 0.132 3.868 18 C -0.059 4.059 19 C -0.135 4.135 20 C 0.329 3.671 21 N -0.317 5.317 22 C 0.078 3.922 23 C -0.272 4.272 24 C 0.057 3.943 25 N -0.285 5.285 26 N -0.485 5.485 27 C 0.095 3.905 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.181 0.819 39 H 0.154 0.846 40 H 0.191 0.809 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 8.600 -13.718 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.365 5.365 14 C 0.392 3.608 15 O -0.451 6.451 16 N -0.338 5.338 17 C 0.032 3.968 18 C -0.088 4.088 19 C -0.158 4.158 20 C 0.102 3.898 21 N -0.095 5.095 22 C -0.065 4.065 23 C -0.301 4.301 24 C -0.131 4.131 25 N -0.104 5.104 26 N -0.197 5.197 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.242 0.758 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.198 0.802 39 H 0.171 0.829 40 H 0.208 0.792 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.480 8.056 -12.403 20.011 hybrid contribution 1.527 0.143 -0.581 1.640 sum -11.953 8.199 -12.984 19.459 Atomic orbital electron populations 1.21831 0.98356 0.98062 1.01105 1.21960 0.92653 0.99774 1.02381 1.18767 0.94153 0.88923 0.79772 0.93132 1.21198 0.90548 1.39198 1.06529 0.92051 1.24878 0.98688 0.94731 0.95331 1.69887 1.35211 1.37398 1.09291 0.86437 0.84685 0.77702 0.78206 1.20548 1.21028 1.19859 1.45868 1.13257 1.57876 1.19486 1.16132 0.83953 0.78867 0.81880 1.90921 1.52053 1.64224 1.37916 1.42833 1.10858 1.61978 1.18147 1.18559 0.85255 0.94005 0.99029 1.21704 0.89566 1.00024 0.97477 1.21522 0.98946 0.95860 0.99446 1.17569 0.82277 0.92758 0.97224 1.45746 1.04077 1.21352 1.38281 1.22897 0.97238 0.90386 0.95953 1.21611 0.93530 1.05116 1.09853 1.24106 0.99122 0.93350 0.96554 1.77477 0.88878 1.22540 1.21524 1.66704 0.98396 1.31887 1.22707 1.22171 0.92775 0.92147 0.99596 0.93045 0.94507 0.95816 0.94988 0.88145 0.92455 0.78053 0.75823 0.82200 0.83359 0.80215 0.82876 0.79242 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.29 6.78 2.24 -69.09 -0.15 6.62 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.92 11.29 55.43 0.63 -23.29 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.71 -13.48 5.03 -59.82 -0.30 -13.78 16 14 C 0.69 12.50 6.89 -86.92 -0.60 11.90 16 15 O -0.57 -12.38 11.17 5.29 0.06 -12.32 16 16 N -0.69 -9.15 5.36 -14.10 -0.08 -9.22 16 17 C 0.13 1.77 6.31 -83.48 -0.53 1.24 16 18 C -0.06 -0.87 8.76 -39.13 -0.34 -1.21 16 19 C -0.14 -1.90 9.69 -39.28 -0.38 -2.28 16 20 C 0.33 4.61 7.55 -154.29 -1.17 3.45 16 21 N -0.32 -4.22 3.81 -12.08 -0.05 -4.26 16 22 C 0.08 0.84 11.10 -16.83 -0.19 0.65 16 23 C -0.27 -2.44 10.80 -40.00 -0.43 -2.87 16 24 C 0.06 0.55 12.02 -17.34 -0.21 0.34 16 25 N -0.28 -3.70 11.83 30.64 0.36 -3.34 16 26 N -0.48 -6.31 9.85 -12.12 -0.12 -6.43 16 27 C 0.09 1.10 11.11 -17.35 -0.19 0.91 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.39 6.17 8.56 -40.82 -0.35 5.82 16 35 H 0.41 3.86 8.84 -40.82 -0.36 3.50 16 36 H 0.16 2.60 6.48 -52.49 -0.34 2.26 16 37 H 0.15 1.99 7.68 -52.48 -0.40 1.59 16 38 H 0.18 1.56 8.05 -52.49 -0.42 1.14 16 39 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.19 1.11 8.06 -52.48 -0.42 0.68 16 41 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -31.28 346.80 -8.64 -39.92 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.93 Total: 11.62 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -4.41 Total: 0.92 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.45 Total: -60.32 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.06 Total: -12.32 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.28 -8.64 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155723176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.484 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds