Wall clock time and date at job start Tue Mar 31 2020 11:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46965 * 54.99840 * 3 2 1 5 5 C 1.50695 * 109.46917 * 174.99825 * 3 2 1 6 6 H 1.08005 * 120.00022 * 120.27544 * 5 3 2 7 7 C 1.37878 * 120.00119 * 300.00004 * 5 3 2 8 8 N 1.31511 * 119.99939 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 119.99952 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46925 * 89.99926 * 9 7 5 11 11 H 1.48502 * 109.46779 * 209.99858 * 9 7 5 12 12 H 1.48501 * 109.47020 * 329.99820 * 9 7 5 13 13 N 1.46496 * 109.47104 * 294.99872 * 3 2 1 14 14 C 1.34779 * 119.99904 * 85.00415 * 13 3 2 15 15 O 1.21587 * 119.99842 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99830 * 179.97438 * 14 13 3 17 17 C 1.40079 * 120.00172 * 174.69810 * 16 14 13 18 18 C 1.39364 * 120.41810 * 327.15663 * 17 16 14 19 19 C 1.38333 * 118.41868 * 179.77697 * 18 17 16 20 20 C 1.38946 * 119.18587 * 0.51217 * 19 18 17 21 21 N 1.39919 * 119.61406 * 179.69949 * 20 19 18 22 22 C 1.35817 * 126.09893 * 180.02562 * 21 20 19 23 23 C 1.35306 * 107.61488 * 179.97438 * 22 21 20 24 24 C 1.39924 * 107.96890 * 0.02562 * 23 22 21 25 25 N 1.30842 * 108.36558 * 359.75148 * 24 23 22 26 26 N 1.32282 * 120.77242 * 359.72940 * 20 19 18 27 27 C 1.31855 * 121.72429 * 359.97438 * 26 20 19 28 28 H 1.09005 * 109.47110 * 300.00147 * 1 2 3 29 29 H 1.09006 * 109.47084 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47226 * 240.00080 * 2 1 3 32 32 H 1.09006 * 109.47084 * 120.00005 * 2 1 3 33 33 H 0.97002 * 119.99607 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00117 * 264.99784 * 13 3 2 35 35 H 0.96998 * 120.00352 * 354.70566 * 16 14 13 36 36 H 1.07995 * 120.79196 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.40347 * 180.23600 * 19 18 17 38 38 H 1.07996 * 126.19607 * 359.97438 * 22 21 20 39 39 H 1.07996 * 126.01717 * 179.97438 * 23 22 21 40 40 H 1.08003 * 125.82002 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.63227 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4442 0.1239 6 1 4.1470 1.8927 -0.6501 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3365 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4416 2.1140 2.0850 11 1 6.4395 -0.3100 2.1551 12 1 6.6136 0.8414 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6319 -0.4320 16 7 0.0789 3.2674 -2.5184 17 6 -1.2232 3.7586 -2.6781 18 6 -2.2999 3.1138 -2.0721 19 6 -3.5675 3.6371 -2.2534 20 6 -3.7257 4.7737 -3.0368 21 7 -5.0046 5.3069 -3.2313 22 6 -5.3096 6.4064 -3.9679 23 6 -6.6492 6.5845 -3.9024 24 6 -7.1814 5.5667 -3.1031 25 7 -6.1994 4.7990 -2.7052 26 7 -2.6813 5.3573 -3.6013 27 6 -1.4581 4.8902 -3.4458 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0613 2.9498 34 1 2.2720 2.1231 -1.9978 35 1 0.7240 3.3612 -3.2366 36 1 -2.1478 2.2285 -1.4726 37 1 -4.4243 3.1653 -1.7953 38 1 -4.6096 7.0264 -4.5082 39 1 -7.2092 7.3738 -4.3818 40 1 -8.2254 5.4345 -2.8600 41 1 -0.6297 5.3938 -3.9220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155723176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:22 Heat of formation + Delta-G solvation = 78.158415 kcal Electronic energy + Delta-G solvation = -25172.366481 eV Core-core repulsion = 21474.899851 eV Total energy + Delta-G solvation = -3697.466631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55796 -41.75737 -40.48418 -37.43281 -36.05750 -34.46218 -33.86154 -33.47565 -32.52021 -31.15382 -29.79320 -28.64581 -25.50222 -25.05931 -24.58936 -22.74208 -21.90597 -21.82069 -21.32904 -19.91990 -19.38060 -18.83221 -17.90807 -17.29277 -16.92810 -16.68864 -16.48952 -16.10209 -15.92417 -15.23865 -15.22072 -14.78452 -14.68048 -14.54055 -14.25432 -14.00289 -13.80975 -13.63017 -13.52066 -13.17467 -12.87990 -12.69241 -12.24708 -12.17638 -12.03031 -11.84364 -11.56221 -11.36737 -11.08523 -11.03325 -10.92648 -10.56812 -10.49753 -10.01580 -9.68231 -8.85819 -8.15460 -6.32174 -0.41063 0.05940 1.04324 1.11681 1.46164 1.46468 1.56521 1.70833 1.86557 2.17124 2.42687 2.72273 3.14641 3.22795 3.39296 3.48491 3.76068 3.86029 4.07788 4.13187 4.43327 4.51530 4.57869 4.58904 4.70950 4.75452 4.78315 4.96728 5.03012 5.07545 5.13685 5.26443 5.44987 5.53532 5.57276 5.61572 5.65074 5.73923 5.86373 6.07141 6.17678 6.22956 6.35521 6.76007 6.81495 7.22200 7.36015 7.67670 8.89861 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.002438 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.433027 B =11484.024277 C =11952.765480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.710 5.710 14 C 0.693 3.307 15 O -0.612 6.612 16 N -0.667 5.667 17 C 0.115 3.885 18 C -0.069 4.069 19 C -0.147 4.147 20 C 0.327 3.673 21 N -0.338 5.338 22 C 0.061 3.939 23 C -0.261 4.261 24 C 0.062 3.938 25 N -0.329 5.329 26 N -0.487 5.487 27 C 0.116 3.884 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.428 0.572 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.197 0.803 39 H 0.187 0.813 40 H 0.226 0.774 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 10.241 -16.291 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.192 3.808 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.363 5.363 14 C 0.393 3.607 15 O -0.492 6.492 16 N -0.317 5.317 17 C 0.015 3.985 18 C -0.098 4.098 19 C -0.170 4.170 20 C 0.100 3.900 21 N -0.116 5.116 22 C -0.080 4.080 23 C -0.289 4.289 24 C -0.126 4.126 25 N -0.148 5.148 26 N -0.200 5.200 27 C -0.045 4.045 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.267 0.733 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.214 0.786 39 H 0.205 0.795 40 H 0.242 0.758 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.430 9.737 -15.064 22.408 hybrid contribution 1.314 -0.261 0.167 1.351 sum -12.116 9.476 -14.896 21.412 Atomic orbital electron populations 1.21660 0.97030 0.98952 1.00236 1.21806 0.93718 0.99239 1.01341 1.18282 0.93464 0.88824 0.80208 0.98194 1.21568 0.91344 1.38706 1.06784 0.90761 1.25743 1.03126 0.94487 0.95112 1.70046 1.37012 1.38380 1.09849 0.85394 0.79333 0.77274 0.78613 1.20607 1.21229 1.18326 1.45424 1.14145 1.58100 1.18603 1.16176 0.83152 0.78742 0.82617 1.90912 1.53006 1.65466 1.39815 1.42368 1.11341 1.60833 1.17153 1.18641 0.84585 0.95040 1.00189 1.21569 0.90614 0.99803 0.97806 1.21453 0.98584 0.96596 1.00398 1.17757 0.83171 0.92472 0.96608 1.45867 1.03798 1.22412 1.39547 1.23405 0.98574 0.90019 0.95980 1.22066 0.92962 1.05157 1.08686 1.24842 1.00093 0.92463 0.95163 1.77466 0.89625 1.24397 1.23300 1.66872 0.98526 1.31788 1.22804 1.22767 0.93362 0.90765 0.97645 0.95540 0.93728 0.93903 0.93946 0.91041 0.92651 0.76049 0.73288 0.84421 0.83809 0.78641 0.79540 0.75802 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.30 14.38 2.24 44.24 0.10 14.48 16 4 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 5 C -0.55 -27.48 8.73 25.60 0.22 -27.25 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.91 -51.10 11.29 21.45 0.24 -50.86 16 9 Si 0.97 40.84 29.54 68.60 2.03 42.86 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 13 N -0.71 -26.62 5.03 -461.42 -2.32 -28.94 16 14 C 0.69 25.05 6.89 179.05 1.23 26.28 16 15 O -0.61 -27.36 11.17 -3.99 -0.04 -27.40 16 16 N -0.67 -16.76 5.36 -316.78 -1.70 -18.46 16 17 C 0.11 2.98 6.31 38.22 0.24 3.22 16 18 C -0.07 -2.10 8.76 22.56 0.20 -1.90 16 19 C -0.15 -4.29 9.69 22.46 0.22 -4.07 16 20 C 0.33 9.06 7.55 132.74 1.00 10.06 16 21 N -0.34 -8.77 3.81 -192.15 -0.73 -9.50 16 22 C 0.06 1.20 11.10 83.40 0.93 2.13 16 23 C -0.26 -3.94 10.80 22.00 0.24 -3.71 16 24 C 0.06 1.07 12.02 85.25 1.02 2.10 16 25 N -0.33 -8.39 11.83 -56.98 -0.67 -9.06 16 26 N -0.49 -11.88 9.85 -192.26 -1.89 -13.77 16 27 C 0.12 2.43 11.11 84.81 0.94 3.37 16 28 H 0.03 1.24 7.84 -2.38 -0.02 1.22 16 29 H 0.04 1.84 5.64 -2.38 -0.01 1.83 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 3.83 5.95 -2.38 -0.01 3.82 16 33 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.40 12.25 8.56 -92.71 -0.79 11.46 16 35 H 0.43 6.98 8.84 -92.71 -0.82 6.16 16 36 H 0.14 4.78 6.48 -2.91 -0.02 4.76 16 37 H 0.14 4.16 7.68 -2.91 -0.02 4.14 16 38 H 0.20 2.97 8.05 -2.91 -0.02 2.95 16 39 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.21 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.90 346.80 1.96 -68.94 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.52 Total: 30.48 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 7.57 Total: 15.72 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -7.08 Total: -130.60 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.04 Total: -27.40 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -70.90 1.96 -68.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155723176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.101 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds