Wall clock time and date at job start Tue Mar 31 2020 11:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 H 1.09000 * 109.46761 * 305.00198 * 3 2 1 5 5 C 1.50698 * 109.47130 * 185.00421 * 3 2 1 6 6 H 1.08006 * 119.99663 * 239.99754 * 5 3 2 7 7 C 1.37876 * 120.00595 * 60.00003 * 5 3 2 8 8 N 1.31514 * 119.99429 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47105 * 89.99631 * 9 7 5 11 11 H 1.48501 * 109.46984 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47102 * 329.99781 * 9 7 5 13 13 N 1.46497 * 109.47068 * 64.99843 * 3 2 1 14 14 C 1.34776 * 120.00071 * 275.00171 * 13 3 2 15 15 O 1.21583 * 120.00191 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.39985 * 120.00103 * 174.68500 * 16 14 13 18 18 C 1.38897 * 120.00453 * 326.51727 * 17 16 14 19 19 C 1.38015 * 119.99562 * 179.78544 * 18 17 16 20 20 C 1.38861 * 120.00381 * 0.48732 * 19 18 17 21 21 N 1.40266 * 119.99666 * 179.71945 * 20 19 18 22 22 N 1.28594 * 124.60997 * 179.72059 * 21 20 19 23 23 C 1.31454 * 108.71750 * 179.86804 * 22 21 20 24 24 C 1.39703 * 105.88873 * 0.38147 * 23 22 21 25 25 N 1.28602 * 124.60996 * 0.02562 * 21 20 19 26 26 C 1.38865 * 120.00710 * 359.74473 * 20 19 18 27 27 C 1.38009 * 120.00570 * 0.02562 * 26 20 19 28 28 H 1.08996 * 109.46936 * 300.00119 * 1 2 3 29 29 H 1.08999 * 109.47048 * 59.99741 * 1 2 3 30 30 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47203 * 239.99854 * 2 1 3 32 32 H 1.08999 * 109.47048 * 120.00259 * 2 1 3 33 33 H 0.97006 * 119.99649 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99585 * 95.00045 * 13 3 2 35 35 H 0.97000 * 119.99910 * 354.68715 * 16 14 13 36 36 H 1.08000 * 119.99833 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.99453 * 180.23033 * 19 18 17 38 38 H 1.07996 * 127.04874 * 180.16974 * 23 22 21 39 39 H 1.08000 * 127.04858 * 179.79282 * 24 23 22 40 40 H 1.08008 * 119.99405 * 179.97438 * 26 20 19 41 41 H 1.07993 * 120.00409 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3812 10 1 6.5539 -0.3521 -0.7599 11 1 6.3836 0.9213 -2.8166 12 1 6.5576 2.0718 -0.6890 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3415 2.6318 0.4321 16 7 0.0785 3.2665 2.5187 17 6 -1.1395 3.9513 2.6025 18 6 -1.6414 4.6146 1.4902 19 6 -2.8444 5.2860 1.5718 20 6 -3.5482 5.3070 2.7687 21 7 -4.7679 5.9943 2.8530 22 7 -5.4936 6.0670 3.9122 23 6 -6.5609 6.7860 3.6437 24 6 -6.4448 7.1565 2.3018 25 7 -5.3154 6.6329 1.8802 26 6 -3.0442 4.6480 3.8822 27 6 -1.8435 3.9725 3.7997 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0619 -2.9496 34 1 2.2721 2.1231 1.9978 35 1 0.6658 3.2253 3.2896 36 1 -1.0921 4.6017 0.5604 37 1 -3.2365 5.7986 0.7057 38 1 -7.3644 7.0357 4.3208 39 1 -7.1403 7.7516 1.7285 40 1 -3.5915 4.6647 4.8132 41 1 -1.4514 3.4603 4.6659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155893124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:14 Heat of formation + Delta-G solvation = 119.291398 kcal Electronic energy + Delta-G solvation = -25177.521028 eV Core-core repulsion = 21481.838057 eV Total energy + Delta-G solvation = -3695.682971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.92220 -40.40838 -38.73960 -35.76674 -34.59969 -33.11233 -32.84303 -32.30759 -31.05003 -30.86340 -28.64266 -26.88416 -24.22002 -23.89601 -23.02100 -22.17510 -21.45163 -20.54806 -19.59065 -18.54483 -18.25876 -17.53852 -16.85733 -16.08568 -15.66809 -15.42514 -15.18639 -14.94577 -14.44776 -14.28660 -14.07913 -13.63301 -13.31361 -13.15404 -12.90888 -12.68335 -12.28534 -11.81869 -11.64736 -11.50744 -11.29954 -11.03046 -10.97179 -10.89040 -10.74637 -10.60145 -10.36709 -10.23587 -9.76823 -9.56379 -9.49477 -9.12314 -9.06716 -8.56461 -8.04913 -7.74114 -6.17632 -4.27329 0.64160 1.23267 2.01720 2.11776 2.23040 3.02937 3.20843 3.28548 3.30539 3.48739 3.89481 3.93385 4.27507 4.64024 4.74823 4.79280 4.86260 5.05019 5.14226 5.15730 5.30436 5.46736 5.63037 5.86103 5.87176 5.93639 6.17593 6.25840 6.36634 6.42141 6.43542 6.62036 6.69655 6.93169 6.98850 7.07191 7.27320 7.30681 7.37714 7.59052 7.79598 7.89715 8.11303 8.12854 8.64789 8.76024 9.13479 9.40570 10.87668 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033072 B = 0.002411 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.432418 B =11611.218349 C =11690.078448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.572 6.572 16 N -0.696 5.696 17 C 0.200 3.800 18 C -0.107 4.107 19 C -0.076 4.076 20 C 0.099 3.901 21 N -0.091 5.091 22 N -0.291 5.291 23 C -0.027 4.027 24 C -0.026 4.026 25 N -0.287 5.287 26 C -0.078 4.078 27 C -0.144 4.144 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.405 0.595 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.200 0.800 39 H 0.201 0.799 40 H 0.141 0.859 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 10.151 12.898 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.449 6.449 16 N -0.343 5.343 17 C 0.102 3.898 18 C -0.128 4.128 19 C -0.097 4.097 20 C 0.009 3.991 21 N 0.016 4.984 22 N -0.131 5.131 23 C -0.209 4.209 24 C -0.208 4.208 25 N -0.127 5.127 26 C -0.099 4.099 27 C -0.166 4.166 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.240 0.760 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.217 0.783 39 H 0.218 0.782 40 H 0.159 0.841 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.967 9.298 11.667 19.767 hybrid contribution 0.530 0.403 0.724 0.984 sum -12.437 9.701 12.391 20.058 Atomic orbital electron populations 1.21817 0.98237 0.97995 1.01263 1.21969 0.92696 0.99828 1.02307 1.18757 0.94098 0.88929 0.79801 0.93106 1.21200 0.90555 1.39263 1.06376 0.92069 1.24877 0.98660 0.94766 0.95339 1.69894 1.35172 1.37376 1.09355 0.86439 0.84745 0.78431 0.77432 1.20541 1.21041 1.19881 1.45871 1.12860 1.58526 1.19383 1.16126 0.83720 0.78799 0.82201 1.90923 1.51601 1.64270 1.38120 1.42987 1.19970 1.55976 1.15385 1.17699 0.86357 0.91438 0.94315 1.21201 0.96101 0.95587 0.99939 1.20799 0.94122 0.98914 0.95891 1.17352 0.83604 1.01250 0.96914 1.44904 1.15934 1.34326 1.03266 1.74075 1.05044 1.19926 1.14016 1.24881 0.98275 1.00641 0.97096 1.24899 0.96160 1.04443 0.95344 1.74131 1.10204 1.10446 1.17889 1.20579 0.95632 0.96325 0.97365 1.20706 0.94716 1.03112 0.98029 0.94355 0.93099 0.95938 0.88198 0.95063 0.92478 0.78119 0.75994 0.82887 0.84010 0.78275 0.78249 0.84082 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.86 2.24 -69.09 -0.15 6.70 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.04 11.29 55.43 0.63 -23.42 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.72 -13.75 5.03 -59.82 -0.30 -14.05 16 14 C 0.69 12.74 6.87 -86.92 -0.60 12.15 16 15 O -0.57 -12.51 11.17 5.29 0.06 -12.45 16 16 N -0.70 -9.55 5.35 -14.20 -0.08 -9.63 16 17 C 0.20 2.72 6.28 -83.64 -0.53 2.20 16 18 C -0.11 -1.59 8.65 -39.42 -0.34 -1.93 16 19 C -0.08 -1.05 9.58 -39.43 -0.38 -1.42 16 20 C 0.10 1.34 6.72 -83.53 -0.56 0.78 16 21 N -0.09 -1.24 4.13 32.51 0.13 -1.10 16 22 N -0.29 -3.59 11.21 30.69 0.34 -3.25 16 23 C -0.03 -0.24 12.20 -17.17 -0.21 -0.45 16 24 C -0.03 -0.25 12.20 -17.17 -0.21 -0.46 16 25 N -0.29 -3.73 11.21 30.69 0.34 -3.39 16 26 C -0.08 -0.91 9.58 -39.43 -0.38 -1.29 16 27 C -0.14 -1.60 9.95 -39.42 -0.39 -1.99 16 28 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 2.62 5.95 -51.92 -0.31 2.31 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.39 6.30 8.56 -40.82 -0.35 5.95 16 35 H 0.40 4.11 8.83 -40.82 -0.36 3.74 16 36 H 0.15 2.56 6.42 -52.49 -0.34 2.23 16 37 H 0.14 1.87 7.62 -52.48 -0.40 1.47 16 38 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.46 7.62 -52.48 -0.40 1.06 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -31.70 345.07 -7.57 -39.26 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.90 Total: 11.54 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.97 Total: -3.78 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 1.07 Total: -54.83 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.06 Total: -12.45 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.70 -7.57 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155893124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.555 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds