Wall clock time and date at job start Tue Mar 31 2020 11:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 H 1.09000 * 109.46761 * 305.00198 * 3 2 1 5 5 C 1.50698 * 109.47130 * 185.00421 * 3 2 1 6 6 H 1.08006 * 119.99663 * 239.99754 * 5 3 2 7 7 C 1.37876 * 120.00595 * 60.00003 * 5 3 2 8 8 N 1.31514 * 119.99429 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47105 * 89.99631 * 9 7 5 11 11 H 1.48501 * 109.46984 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47102 * 329.99781 * 9 7 5 13 13 N 1.46497 * 109.47068 * 64.99843 * 3 2 1 14 14 C 1.34776 * 120.00071 * 275.00171 * 13 3 2 15 15 O 1.21583 * 120.00191 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.39985 * 120.00103 * 174.68500 * 16 14 13 18 18 C 1.38897 * 120.00453 * 326.51727 * 17 16 14 19 19 C 1.38015 * 119.99562 * 179.78544 * 18 17 16 20 20 C 1.38861 * 120.00381 * 0.48732 * 19 18 17 21 21 N 1.40266 * 119.99666 * 179.71945 * 20 19 18 22 22 N 1.28594 * 124.60997 * 179.72059 * 21 20 19 23 23 C 1.31454 * 108.71750 * 179.86804 * 22 21 20 24 24 C 1.39703 * 105.88873 * 0.38147 * 23 22 21 25 25 N 1.28602 * 124.60996 * 0.02562 * 21 20 19 26 26 C 1.38865 * 120.00710 * 359.74473 * 20 19 18 27 27 C 1.38009 * 120.00570 * 0.02562 * 26 20 19 28 28 H 1.08996 * 109.46936 * 300.00119 * 1 2 3 29 29 H 1.08999 * 109.47048 * 59.99741 * 1 2 3 30 30 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47203 * 239.99854 * 2 1 3 32 32 H 1.08999 * 109.47048 * 120.00259 * 2 1 3 33 33 H 0.97006 * 119.99649 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99585 * 95.00045 * 13 3 2 35 35 H 0.97000 * 119.99910 * 354.68715 * 16 14 13 36 36 H 1.08000 * 119.99833 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.99453 * 180.23033 * 19 18 17 38 38 H 1.07996 * 127.04874 * 180.16974 * 23 22 21 39 39 H 1.08000 * 127.04858 * 179.79282 * 24 23 22 40 40 H 1.08008 * 119.99405 * 179.97438 * 26 20 19 41 41 H 1.07993 * 120.00409 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3812 10 1 6.5539 -0.3521 -0.7599 11 1 6.3836 0.9213 -2.8166 12 1 6.5576 2.0718 -0.6890 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3415 2.6318 0.4321 16 7 0.0785 3.2665 2.5187 17 6 -1.1395 3.9513 2.6025 18 6 -1.6414 4.6146 1.4902 19 6 -2.8444 5.2860 1.5718 20 6 -3.5482 5.3070 2.7687 21 7 -4.7679 5.9943 2.8530 22 7 -5.4936 6.0670 3.9122 23 6 -6.5609 6.7860 3.6437 24 6 -6.4448 7.1565 2.3018 25 7 -5.3154 6.6329 1.8802 26 6 -3.0442 4.6480 3.8822 27 6 -1.8435 3.9725 3.7997 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0619 -2.9496 34 1 2.2721 2.1231 1.9978 35 1 0.6658 3.2253 3.2896 36 1 -1.0921 4.6017 0.5604 37 1 -3.2365 5.7986 0.7057 38 1 -7.3644 7.0357 4.3208 39 1 -7.1403 7.7516 1.7285 40 1 -3.5915 4.6647 4.8132 41 1 -1.4514 3.4603 4.6659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155893124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:13 Heat of formation + Delta-G solvation = 97.678752 kcal Electronic energy + Delta-G solvation = -25178.458223 eV Core-core repulsion = 21481.838057 eV Total energy + Delta-G solvation = -3696.620165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.74560 -41.69933 -39.96951 -37.31551 -36.00320 -34.48411 -33.84409 -33.69788 -32.55934 -32.04710 -29.80548 -28.64010 -25.43535 -24.83455 -24.66142 -23.16545 -22.59792 -21.83392 -21.32946 -19.77934 -19.44184 -18.78660 -17.86365 -17.72561 -17.07571 -16.70540 -16.24986 -16.05133 -15.97530 -15.40979 -15.15140 -15.01466 -14.56032 -14.53358 -14.34266 -13.92044 -13.76830 -13.50609 -13.16524 -12.88469 -12.66304 -12.59143 -12.54672 -12.16205 -12.05742 -11.94373 -11.75196 -11.56497 -11.48348 -11.14331 -11.01090 -10.59079 -10.52845 -10.12864 -9.68209 -8.85874 -8.15178 -6.31959 -0.33221 0.23452 1.08818 1.24708 1.46058 1.46676 1.54271 1.56543 1.75522 2.18607 2.42878 2.72421 3.14761 3.19569 3.43590 3.80048 3.82332 4.02674 4.12083 4.33016 4.39188 4.51087 4.55179 4.58832 4.75632 4.77763 4.93430 5.04624 5.07447 5.10305 5.16216 5.28025 5.34550 5.39482 5.45391 5.55204 5.62018 5.68819 5.76481 5.87701 5.98398 6.18067 6.26807 6.76245 7.24674 7.29907 7.36355 7.70515 8.90168 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033072 B = 0.002411 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.432418 B =11611.218349 C =11690.078448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.712 5.712 14 C 0.692 3.308 15 O -0.610 6.610 16 N -0.675 5.675 17 C 0.179 3.821 18 C -0.121 4.121 19 C -0.087 4.087 20 C 0.097 3.903 21 N -0.117 5.117 22 N -0.315 5.315 23 C -0.013 4.013 24 C -0.016 4.016 25 N -0.327 5.327 26 C -0.076 4.076 27 C -0.119 4.119 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.160 0.840 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 10.790 15.947 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.192 3.808 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.490 6.490 16 N -0.324 5.324 17 C 0.082 3.918 18 C -0.143 4.143 19 C -0.108 4.108 20 C 0.006 3.994 21 N -0.009 5.009 22 N -0.154 5.154 23 C -0.196 4.196 24 C -0.199 4.199 25 N -0.166 5.166 26 C -0.097 4.097 27 C -0.140 4.140 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.260 0.740 39 H 0.255 0.745 40 H 0.177 0.823 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.693 9.959 14.794 22.485 hybrid contribution 0.510 0.359 -0.183 0.650 sum -13.183 10.319 14.611 22.220 Atomic orbital electron populations 1.21642 0.97094 0.98853 1.00193 1.21811 0.93586 0.99319 1.01346 1.18280 0.93448 0.88811 0.80236 0.98137 1.21557 0.91312 1.38861 1.06667 0.90876 1.25743 1.03152 0.94478 0.95075 1.70051 1.36999 1.38318 1.09901 0.85383 0.79286 0.78830 0.77050 1.19723 1.21491 1.18925 1.45439 1.13739 1.58770 1.18525 1.16181 0.82990 0.78631 0.82930 1.90913 1.52602 1.65499 1.39978 1.42555 1.20436 1.54963 1.14460 1.17816 0.86704 0.92246 0.95017 1.21003 0.96642 0.97065 0.99566 1.20670 0.94157 0.99532 0.96436 1.17554 0.83880 1.00904 0.97014 1.44924 1.16398 1.35787 1.03752 1.74041 1.06130 1.21152 1.14071 1.25707 0.97888 0.98447 0.97557 1.25692 0.95226 1.03092 0.95904 1.74123 1.11940 1.11654 1.18864 1.20834 0.95776 0.95686 0.97438 1.21002 0.93615 1.01531 0.97830 0.93878 0.95663 0.93945 0.91009 0.93933 0.92634 0.76161 0.73596 0.85819 0.84642 0.74008 0.74454 0.82257 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.30 14.62 2.24 44.24 0.10 14.72 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -27.84 8.73 25.60 0.22 -27.62 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.91 -51.44 11.29 21.45 0.24 -51.20 16 9 Si 0.97 41.20 29.54 68.60 2.03 43.23 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 N -0.71 -27.47 5.03 -461.43 -2.32 -29.79 16 14 C 0.69 25.88 6.87 179.05 1.23 27.11 16 15 O -0.61 -27.97 11.17 -3.98 -0.04 -28.01 16 16 N -0.67 -17.92 5.35 -317.10 -1.70 -19.62 16 17 C 0.18 4.78 6.28 38.16 0.24 5.02 16 18 C -0.12 -3.79 8.65 22.37 0.19 -3.60 16 19 C -0.09 -2.51 9.58 22.37 0.21 -2.30 16 20 C 0.10 2.60 6.72 38.09 0.26 2.86 16 21 N -0.12 -3.09 4.13 -51.07 -0.21 -3.30 16 22 N -0.32 -7.17 11.21 -56.81 -0.64 -7.81 16 23 C -0.01 -0.20 12.20 85.10 1.04 0.84 16 24 C -0.02 -0.26 12.20 85.11 1.04 0.77 16 25 N -0.33 -8.30 11.21 -56.81 -0.64 -8.93 16 26 C -0.08 -1.65 9.58 22.37 0.21 -1.43 16 27 C -0.12 -2.35 9.95 22.37 0.22 -2.13 16 28 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 29 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 3.89 5.95 -2.38 -0.01 3.88 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 34 H 0.40 12.69 8.56 -92.70 -0.79 11.90 16 35 H 0.43 7.66 8.83 -92.71 -0.82 6.84 16 36 H 0.12 4.57 6.42 -2.91 -0.02 4.55 16 37 H 0.14 3.93 7.62 -2.91 -0.02 3.91 16 38 H 0.24 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.16 2.87 7.62 -2.91 -0.02 2.85 16 41 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -72.76 345.07 2.40 -70.36 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.52 Total: 29.99 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.20 Total: 5.07 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -5.26 Total: -120.64 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -72.76 2.40 -70.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155893124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.042 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds