Wall clock time and date at job start Tue Mar 31 2020 11:23:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53006 * 109.46501 * 2 1
4 4 H 1.08996 * 109.47464 * 305.00223 * 3 2 1
5 5 C 1.50701 * 109.46796 * 184.99997 * 3 2 1
6 6 H 1.08005 * 119.99832 * 240.00330 * 5 3 2
7 7 C 1.37875 * 119.99936 * 60.00259 * 5 3 2
8 8 N 1.31514 * 120.00112 * 359.97438 * 7 5 3
9 9 Si 1.86801 * 119.99969 * 180.02562 * 7 5 3
10 10 H 1.48499 * 109.47111 * 89.99928 * 9 7 5
11 11 H 1.48504 * 109.47208 * 209.99976 * 9 7 5
12 12 H 1.48499 * 109.46926 * 329.99905 * 9 7 5
13 13 N 1.46503 * 109.46849 * 65.00601 * 3 2 1
14 14 C 1.34780 * 119.99803 * 274.99035 * 13 3 2
15 15 O 1.21595 * 119.99972 * 0.02562 * 14 13 3
16 16 N 1.34772 * 120.00254 * 180.02562 * 14 13 3
17 17 C 1.40013 * 120.00412 * 184.61915 * 16 14 13
18 18 C 1.38886 * 120.00841 * 144.90051 * 17 16 14
19 19 C 1.38026 * 119.99393 * 179.97438 * 18 17 16
20 20 C 1.38839 * 120.00785 * 359.97265 * 19 18 17
21 21 N 1.40326 * 119.99914 * 180.02562 * 20 19 18
22 22 C 1.36091 * 125.94594 * 180.02562 * 21 20 19
23 23 C 1.35383 * 106.05032 * 179.97438 * 22 21 20
24 24 N 1.33757 * 106.53858 * 359.97438 * 23 22 21
25 25 N 1.28607 * 109.05613 * 0.02562 * 24 23 22
26 26 C 1.38845 * 120.00808 * 0.30101 * 20 19 18
27 27 C 1.38027 * 120.00581 * 359.44965 * 26 20 19
28 28 H 1.08995 * 109.47163 * 299.99587 * 1 2 3
29 29 H 1.08999 * 109.47148 * 59.99751 * 1 2 3
30 30 H 1.09001 * 109.46742 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.47163 * 240.00413 * 2 1 3
32 32 H 1.08994 * 109.47423 * 119.99887 * 2 1 3
33 33 H 0.96996 * 120.00026 * 180.02562 * 8 7 5
34 34 H 0.96996 * 120.00089 * 94.99629 * 13 3 2
35 35 H 0.97008 * 119.99727 * 4.61815 * 16 14 13
36 36 H 1.08002 * 119.99921 * 359.95152 * 18 17 16
37 37 H 1.08003 * 119.99551 * 179.97438 * 19 18 17
38 38 H 1.08001 * 126.97177 * 359.71111 * 22 21 20
39 39 H 1.08002 * 126.72865 * 179.97438 * 23 22 21
40 40 H 1.08002 * 119.99311 * 179.70564 * 26 20 19
41 41 H 1.07995 * 120.00557 * 180.25820 * 27 26 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6053 1.9816 -0.8417
5 6 3.5418 1.4445 -0.1238
6 1 4.1471 1.8891 0.6524
7 6 4.1432 0.8787 -1.2280
8 7 3.4062 0.3368 -2.1729
9 14 6.0049 0.8803 -1.3812
10 1 6.5538 -0.3517 -0.7599
11 1 6.3835 0.9218 -2.8165
12 1 6.5574 2.0723 -0.6889
13 7 1.6524 2.0975 1.2519
14 6 0.4350 2.6644 1.3671
15 8 -0.3417 2.6319 0.4321
16 7 0.0786 3.2673 2.5185
17 6 -1.2187 3.7708 2.6728
18 6 -1.8423 3.7157 3.9125
19 6 -3.1210 4.2127 4.0644
20 6 -3.7836 4.7682 2.9781
21 7 -5.0834 5.2740 3.1329
22 6 -5.8415 5.8412 2.1553
23 6 -7.0133 6.1827 2.7412
24 7 -6.9191 5.8151 4.0238
25 7 -5.7664 5.2811 4.2240
26 6 -3.1625 4.8183 1.7374
27 6 -1.8819 4.3261 1.5861
28 1 -0.3633 0.5137 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8934 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 3.8293 -0.0615 -2.9495
34 1 2.2719 2.1231 1.9978
35 1 0.7209 3.3523 3.2405
36 1 -1.3269 3.2836 4.7576
37 1 -3.6062 4.1695 5.0284
38 1 -5.5631 5.9925 1.1229
39 1 -7.8584 6.6585 2.2660
40 1 -3.6800 5.2462 0.8914
41 1 -1.3972 4.3689 0.6220
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000155967899.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:03
Heat of formation + Delta-G solvation = 106.857600 kcal
Electronic energy + Delta-G solvation = -25181.956218 eV
Core-core repulsion = 21485.734077 eV
Total energy + Delta-G solvation = -3696.222141 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.57636 -40.50954 -38.88092 -35.97599 -34.83901 -33.60158 -32.43872 -31.83737
-30.95963 -30.82810 -28.86224 -26.94321 -24.33893 -23.95257 -23.08327 -21.99511
-21.64806 -20.64840 -19.65446 -18.85335 -18.32534 -17.66144 -16.63190 -16.14820
-15.63486 -15.40291 -15.22913 -15.04120 -14.50861 -14.33558 -14.09228 -13.74591
-13.40534 -13.25342 -13.03793 -12.73655 -12.39381 -12.07288 -11.70453 -11.48320
-11.34289 -11.25416 -11.21198 -11.06214 -10.90357 -10.40503 -10.29230 -10.00925
-9.69504 -9.65793 -9.56376 -9.22977 -9.13236 -8.60491 -8.18809 -7.86140
-6.21433 -4.31328 0.44848 1.10169 1.80444 2.09594 2.34083 2.94599
3.18116 3.25939 3.27565 3.38106 3.77364 4.16980 4.23913 4.33846
4.61484 4.71997 4.80737 4.91059 4.99628 5.05736 5.10588 5.22162
5.47137 5.64850 5.80174 5.86198 6.08112 6.13559 6.31013 6.32743
6.38813 6.54614 6.57239 6.86195 6.88176 7.01439 7.21895 7.25190
7.32186 7.55003 7.74558 7.84544 8.08630 8.24977 8.59218 8.70882
9.06611 9.36564 10.83834
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.035481 B = 0.002401 C = 0.002364
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 788.972752 B =11656.809391 C =11840.641096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.129 4.129
3 C 0.286 3.714
4 H 0.051 0.949
5 C -0.536 4.536
6 H 0.061 0.939
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.902 3.098
10 H -0.279 1.279
11 H -0.285 1.285
12 H -0.274 1.274
13 N -0.715 5.715
14 C 0.692 3.308
15 O -0.574 6.574
16 N -0.696 5.696
17 C 0.199 3.801
18 C -0.140 4.140
19 C -0.076 4.076
20 C 0.080 3.920
21 N -0.229 5.229
22 C -0.050 4.050
23 C -0.049 4.049
24 N -0.271 5.271
25 N -0.085 5.085
26 C -0.092 4.092
27 C -0.103 4.103
28 H 0.037 0.963
29 H 0.050 0.950
30 H 0.022 0.978
31 H 0.100 0.900
32 H 0.031 0.969
33 H 0.265 0.735
34 H 0.387 0.613
35 H 0.406 0.594
36 H 0.138 0.862
37 H 0.142 0.858
38 H 0.193 0.807
39 H 0.193 0.807
40 H 0.135 0.865
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.055 8.817 9.190 16.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.168 4.168
3 C 0.185 3.815
4 H 0.069 0.931
5 C -0.575 4.575
6 H 0.079 0.921
7 C -0.136 4.136
8 N -0.518 5.518
9 Si 0.729 3.271
10 H -0.205 1.205
11 H -0.210 1.210
12 H -0.199 1.199
13 N -0.365 5.365
14 C 0.393 3.607
15 O -0.452 6.452
16 N -0.344 5.344
17 C 0.101 3.899
18 C -0.161 4.161
19 C -0.097 4.097
20 C -0.011 4.011
21 N -0.017 5.017
22 C -0.199 4.199
23 C -0.205 4.205
24 N -0.137 5.137
25 N -0.063 5.063
26 C -0.114 4.114
27 C -0.124 4.124
28 H 0.056 0.944
29 H 0.069 0.931
30 H 0.041 0.959
31 H 0.118 0.882
32 H 0.050 0.950
33 H 0.076 0.924
34 H 0.219 0.781
35 H 0.241 0.759
36 H 0.156 0.844
37 H 0.160 0.840
38 H 0.210 0.790
39 H 0.210 0.790
40 H 0.153 0.847
41 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -11.692 8.237 9.562 17.204
hybrid contribution 1.642 0.195 -0.647 1.776
sum -10.050 8.432 8.915 15.861
Atomic orbital electron populations
1.21815 0.98249 0.98023 1.01189 1.21968 0.92691 0.99800 1.02347
1.18765 0.94121 0.88931 0.79733 0.93103 1.21200 0.90543 1.39348
1.06395 0.92060 1.24874 0.98684 0.94725 0.95326 1.69886 1.35210
1.37336 1.09361 0.86440 0.84701 0.78460 0.77453 1.20514 1.21025
1.19875 1.45878 1.13075 1.58123 1.19457 1.16119 0.83813 0.78734
0.82076 1.90893 1.51735 1.64680 1.37852 1.42972 1.11703 1.61048
1.18641 1.17719 0.85194 0.93061 0.93954 1.20809 0.94548 1.03407
0.97357 1.20645 0.94081 0.96938 0.98003 1.17608 0.81741 1.05426
0.96369 1.44742 1.11948 1.37457 1.07528 1.23858 0.93323 1.04849
0.97846 1.23622 0.99219 1.06134 0.91552 1.75091 1.09836 1.12337
1.16417 1.78322 1.00131 1.19268 1.08596 1.20782 0.95434 1.00491
0.94650 1.21346 0.94078 0.96327 1.00646 0.94398 0.93110 0.95918
0.88175 0.95036 0.92449 0.78073 0.75887 0.84378 0.83975 0.78975
0.78987 0.84708 0.82290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16
2 C -0.13 -2.97 5.45 -26.72 -0.15 -3.12 16
3 C 0.29 6.69 2.24 -69.08 -0.15 6.53 16
4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16
5 C -0.54 -13.31 8.73 -34.44 -0.30 -13.61 16
6 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16
7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16
8 N -0.88 -23.63 11.29 55.43 0.63 -23.01 16
9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16
10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16
13 N -0.71 -13.24 5.03 -59.81 -0.30 -13.54 16
14 C 0.69 12.13 6.98 -86.92 -0.61 11.52 16
15 O -0.57 -11.85 10.91 5.28 0.06 -11.79 16
16 N -0.70 -8.91 5.34 -14.20 -0.08 -8.98 16
17 C 0.20 2.46 6.30 -83.64 -0.53 1.94 16
18 C -0.14 -1.42 9.96 -39.42 -0.39 -1.82 16
19 C -0.08 -0.82 9.61 -39.44 -0.38 -1.20 16
20 C 0.08 0.92 6.68 -83.52 -0.56 0.36 16
21 N -0.23 -2.73 3.56 -10.45 -0.04 -2.77 16
22 C -0.05 -0.47 10.92 -16.68 -0.18 -0.65 16
23 C -0.05 -0.47 12.05 -17.73 -0.21 -0.69 16
24 N -0.27 -3.60 12.39 30.24 0.37 -3.23 16
25 N -0.08 -1.16 12.41 60.35 0.75 -0.41 16
26 C -0.09 -1.01 9.45 -39.43 -0.37 -1.38 16
27 C -0.10 -1.33 8.69 -39.42 -0.34 -1.67 16
28 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16
29 H 0.05 1.15 7.84 -51.93 -0.41 0.75 16
30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16
32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16
34 H 0.39 6.08 8.56 -40.82 -0.35 5.73 16
35 H 0.41 3.82 8.84 -40.82 -0.36 3.45 16
36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16
37 H 0.14 1.42 7.69 -52.48 -0.40 1.01 16
38 H 0.19 1.06 7.10 -52.49 -0.37 0.69 16
39 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16
40 H 0.14 1.13 6.76 -52.49 -0.35 0.77 16
41 H 0.16 2.38 6.22 -52.49 -0.33 2.05 16
LS Contribution 343.27 15.07 5.17 5.17
Total: -1.00 -31.09 343.27 -7.21 -38.30
By element:
Atomic # 1 Polarization: 15.07 SS G_CDS: -4.80 Total: 10.27 kcal
Atomic # 6 Polarization: -0.77 SS G_CDS: -3.95 Total: -4.73 kcal
Atomic # 7 Polarization: -53.27 SS G_CDS: 1.34 Total: -51.93 kcal
Atomic # 8 Polarization: -11.85 SS G_CDS: 0.06 Total: -11.79 kcal
Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -31.09 -7.21 -38.30 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000155967899.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.153 kcal
(2) G-P(sol) polarization free energy of solvation -31.086 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds