Wall clock time and date at job start Tue Mar 31 2020 11:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46501 * 2 1 4 4 H 1.08996 * 109.47464 * 305.00223 * 3 2 1 5 5 C 1.50701 * 109.46796 * 184.99997 * 3 2 1 6 6 H 1.08005 * 119.99832 * 240.00330 * 5 3 2 7 7 C 1.37875 * 119.99936 * 60.00259 * 5 3 2 8 8 N 1.31514 * 120.00112 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47111 * 89.99928 * 9 7 5 11 11 H 1.48504 * 109.47208 * 209.99976 * 9 7 5 12 12 H 1.48499 * 109.46926 * 329.99905 * 9 7 5 13 13 N 1.46503 * 109.46849 * 65.00601 * 3 2 1 14 14 C 1.34780 * 119.99803 * 274.99035 * 13 3 2 15 15 O 1.21595 * 119.99972 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00254 * 180.02562 * 14 13 3 17 17 C 1.40013 * 120.00412 * 184.61915 * 16 14 13 18 18 C 1.38886 * 120.00841 * 144.90051 * 17 16 14 19 19 C 1.38026 * 119.99393 * 179.97438 * 18 17 16 20 20 C 1.38839 * 120.00785 * 359.97265 * 19 18 17 21 21 N 1.40326 * 119.99914 * 180.02562 * 20 19 18 22 22 C 1.36091 * 125.94594 * 180.02562 * 21 20 19 23 23 C 1.35383 * 106.05032 * 179.97438 * 22 21 20 24 24 N 1.33757 * 106.53858 * 359.97438 * 23 22 21 25 25 N 1.28607 * 109.05613 * 0.02562 * 24 23 22 26 26 C 1.38845 * 120.00808 * 0.30101 * 20 19 18 27 27 C 1.38027 * 120.00581 * 359.44965 * 26 20 19 28 28 H 1.08995 * 109.47163 * 299.99587 * 1 2 3 29 29 H 1.08999 * 109.47148 * 59.99751 * 1 2 3 30 30 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47163 * 240.00413 * 2 1 3 32 32 H 1.08994 * 109.47423 * 119.99887 * 2 1 3 33 33 H 0.96996 * 120.00026 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00089 * 94.99629 * 13 3 2 35 35 H 0.97008 * 119.99727 * 4.61815 * 16 14 13 36 36 H 1.08002 * 119.99921 * 359.95152 * 18 17 16 37 37 H 1.08003 * 119.99551 * 179.97438 * 19 18 17 38 38 H 1.08001 * 126.97177 * 359.71111 * 22 21 20 39 39 H 1.08002 * 126.72865 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99311 * 179.70564 * 26 20 19 41 41 H 1.07995 * 120.00557 * 180.25820 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6524 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8803 -1.3812 10 1 6.5538 -0.3517 -0.7599 11 1 6.3835 0.9218 -2.8165 12 1 6.5574 2.0723 -0.6889 13 7 1.6524 2.0975 1.2519 14 6 0.4350 2.6644 1.3671 15 8 -0.3417 2.6319 0.4321 16 7 0.0786 3.2673 2.5185 17 6 -1.2187 3.7708 2.6728 18 6 -1.8423 3.7157 3.9125 19 6 -3.1210 4.2127 4.0644 20 6 -3.7836 4.7682 2.9781 21 7 -5.0834 5.2740 3.1329 22 6 -5.8415 5.8412 2.1553 23 6 -7.0133 6.1827 2.7412 24 7 -6.9191 5.8151 4.0238 25 7 -5.7664 5.2811 4.2240 26 6 -3.1625 4.8183 1.7374 27 6 -1.8819 4.3261 1.5861 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0615 -2.9495 34 1 2.2719 2.1231 1.9978 35 1 0.7209 3.3523 3.2405 36 1 -1.3269 3.2836 4.7576 37 1 -3.6062 4.1695 5.0284 38 1 -5.5631 5.9925 1.1229 39 1 -7.8584 6.6585 2.2660 40 1 -3.6800 5.2462 0.8914 41 1 -1.3972 4.3689 0.6220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155967899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:03 Heat of formation + Delta-G solvation = 86.186050 kcal Electronic energy + Delta-G solvation = -25182.852603 eV Core-core repulsion = 21485.734077 eV Total energy + Delta-G solvation = -3697.118526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.40825 -41.69704 -40.01109 -37.38515 -36.18573 -34.75304 -34.13532 -32.67395 -32.62538 -31.66620 -29.96765 -28.67240 -25.48666 -24.84637 -24.68676 -23.00796 -22.63748 -21.88060 -21.32915 -19.77709 -19.64440 -18.81501 -17.85665 -17.48894 -16.98078 -16.73123 -16.21111 -16.11074 -15.99461 -15.44904 -15.03112 -14.94957 -14.55929 -14.52752 -14.31707 -13.97031 -13.79513 -13.50170 -13.15811 -12.93421 -12.87553 -12.66590 -12.48128 -12.20082 -12.12579 -12.07075 -12.04053 -11.58412 -11.16301 -11.02114 -10.85220 -10.52435 -10.45690 -10.12516 -9.69702 -8.98600 -8.14837 -6.31347 -0.43223 0.23448 0.94319 1.28001 1.46425 1.47181 1.54317 1.56696 1.75694 2.18773 2.43213 2.70170 3.15246 3.39338 3.45727 3.60929 3.78395 4.01671 4.12859 4.20454 4.29790 4.42043 4.52363 4.59782 4.62560 4.72550 4.78521 4.94553 5.07693 5.13802 5.18585 5.28353 5.29938 5.37426 5.46130 5.55996 5.62714 5.63993 5.77085 5.87846 5.94024 6.18815 6.26522 6.76914 7.24479 7.36958 7.40150 7.70662 8.90332 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.002401 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.972752 B =11656.809391 C =11840.641096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.713 5.713 14 C 0.693 3.307 15 O -0.608 6.608 16 N -0.677 5.677 17 C 0.179 3.821 18 C -0.122 4.122 19 C -0.080 4.080 20 C 0.076 3.924 21 N -0.237 5.237 22 C -0.045 4.045 23 C -0.050 4.050 24 N -0.302 5.302 25 N -0.119 5.119 26 C -0.086 4.086 27 C -0.119 4.119 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.424 0.576 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.230 0.770 39 H 0.228 0.772 40 H 0.159 0.841 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 9.461 10.509 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.366 5.366 14 C 0.394 3.606 15 O -0.488 6.488 16 N -0.326 5.326 17 C 0.082 3.918 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.016 4.016 21 N -0.025 5.025 22 C -0.193 4.193 23 C -0.207 4.207 24 N -0.167 5.167 25 N -0.097 5.097 26 C -0.107 4.107 27 C -0.141 4.141 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.263 0.737 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.246 0.754 39 H 0.245 0.755 40 H 0.177 0.823 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.727 8.912 10.972 18.366 hybrid contribution 1.508 0.086 -1.061 1.846 sum -10.219 8.998 9.911 16.841 Atomic orbital electron populations 1.21637 0.96978 0.98822 1.00273 1.21815 0.93705 0.99378 1.01241 1.18270 0.93352 0.88768 0.80280 0.97837 1.21565 0.91428 1.38841 1.06597 0.90941 1.25712 1.02996 0.94503 0.95124 1.70037 1.36945 1.38314 1.09899 0.85414 0.79481 0.78784 0.77053 1.19889 1.21479 1.18919 1.45453 1.14087 1.58472 1.18547 1.16161 0.83007 0.78601 0.82853 1.90883 1.52580 1.65771 1.39537 1.42575 1.12478 1.60015 1.17544 1.17890 0.85031 0.94098 0.94815 1.20999 0.94093 1.02028 0.97151 1.20852 0.94266 0.96642 0.98292 1.17780 0.81854 1.05229 0.96703 1.44869 1.12053 1.37677 1.07898 1.24576 0.92713 1.03123 0.98912 1.24300 1.00476 1.05475 0.90417 1.75044 1.10046 1.13149 1.18471 1.78290 1.00756 1.20967 1.09661 1.20891 0.94634 0.99807 0.95345 1.21225 0.95096 0.97763 0.99971 0.93886 0.95357 0.94125 0.91036 0.94173 0.92635 0.76243 0.73737 0.81433 0.83221 0.75391 0.75540 0.82335 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.51 71.98 0.61 -4.53 16 2 C -0.12 -5.71 5.45 30.60 0.17 -5.54 16 3 C 0.30 14.15 2.24 44.25 0.10 14.25 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -27.13 8.73 25.60 0.22 -26.91 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -50.24 11.29 21.45 0.24 -50.00 16 9 Si 0.97 40.34 29.54 68.60 2.03 42.37 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 13 N -0.71 -26.21 5.03 -461.39 -2.32 -28.53 16 14 C 0.69 24.15 6.98 179.05 1.25 25.39 16 15 O -0.61 -25.67 10.91 -4.02 -0.04 -25.71 16 16 N -0.68 -16.41 5.34 -317.09 -1.69 -18.11 16 17 C 0.18 4.19 6.30 38.14 0.24 4.43 16 18 C -0.12 -2.20 9.96 22.37 0.22 -1.97 16 19 C -0.08 -1.58 9.61 22.36 0.21 -1.36 16 20 C 0.08 1.62 6.68 38.07 0.25 1.87 16 21 N -0.24 -5.26 3.56 -186.96 -0.67 -5.93 16 22 C -0.04 -0.72 10.92 83.37 0.91 0.19 16 23 C -0.05 -0.86 12.05 83.74 1.01 0.15 16 24 N -0.30 -7.71 12.39 -58.24 -0.72 -8.43 16 25 N -0.12 -3.16 12.41 37.02 0.46 -2.70 16 26 C -0.09 -1.75 9.45 22.37 0.21 -1.54 16 27 C -0.12 -3.03 8.69 22.38 0.19 -2.84 16 28 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 29 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 3.79 5.95 -2.39 -0.01 3.77 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.40 12.11 8.56 -92.71 -0.79 11.31 16 35 H 0.42 7.02 8.84 -92.70 -0.82 6.20 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 2.74 7.69 -2.91 -0.02 2.72 16 38 H 0.23 1.68 7.10 -2.91 -0.02 1.66 16 39 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.16 2.31 6.76 -2.91 -0.02 2.29 16 41 H 0.14 4.15 6.22 -2.91 -0.02 4.13 16 Total: -1.00 -69.77 343.27 2.82 -66.94 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.52 Total: 27.20 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.06 Total: 2.91 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.70 Total: -113.70 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.77 2.82 -66.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155967899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.129 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds