Wall clock time and date at job start Tue Mar 31 2020 10:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 C 1.50702 * 109.47000 * 119.99951 * 2 1 3 5 5 N 1.31071 * 126.66179 * 300.03705 * 4 2 1 6 6 N 1.28839 * 107.99413 * 179.97438 * 5 4 2 7 7 N 1.28743 * 109.39381 * 359.74318 * 6 5 4 8 8 N 1.29023 * 108.80716 * 0.43470 * 7 6 5 9 9 C 1.46497 * 126.43521 * 179.83867 * 8 7 6 10 10 C 1.50698 * 109.47179 * 269.68389 * 9 8 7 11 11 O 1.21282 * 120.00119 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00581 * 180.02562 * 10 9 8 13 13 C 1.37145 * 119.99335 * 5.54133 * 12 10 9 14 14 H 1.08000 * 120.00167 * 329.35345 * 13 12 10 15 15 C 1.38886 * 119.99541 * 149.35869 * 13 12 10 16 16 N 1.31430 * 119.99868 * 162.95773 * 15 13 12 17 17 Si 1.86798 * 120.00448 * 342.96095 * 15 13 12 18 18 H 1.48498 * 109.47170 * 84.89942 * 17 15 13 19 19 H 1.48498 * 109.47213 * 204.90147 * 17 15 13 20 20 H 1.48504 * 109.47001 * 324.90153 * 17 15 13 21 21 C 1.39788 * 120.00430 * 185.54110 * 12 10 9 22 22 C 1.38953 * 120.07718 * 122.66992 * 21 12 10 23 23 C 1.38081 * 119.92064 * 180.29413 * 22 21 12 24 24 C 1.38310 * 120.08097 * 359.97438 * 23 22 21 25 25 C 1.38312 * 120.15084 * 359.97438 * 24 23 22 26 26 C 1.38085 * 120.07971 * 0.03020 * 25 24 23 27 27 H 1.09001 * 109.47365 * 299.99775 * 1 2 3 28 28 H 1.08998 * 109.47531 * 60.00128 * 1 2 3 29 29 H 1.09005 * 109.47336 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47075 * 240.00440 * 2 1 3 31 31 H 1.09004 * 109.47424 * 60.00250 * 3 2 1 32 32 H 1.09003 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47503 * 300.00103 * 3 2 1 34 34 H 1.09003 * 109.47427 * 149.68506 * 9 8 7 35 35 H 1.09000 * 109.47584 * 29.68275 * 9 8 7 36 36 H 0.96996 * 120.00105 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.04403 * 0.25801 * 22 21 12 38 38 H 1.08003 * 119.96071 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.92425 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.95507 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.03448 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7969 -0.3788 2.4765 6 7 2.3980 -1.2293 3.2351 7 7 3.0062 -2.0980 2.5052 8 7 2.8094 -1.8088 1.2633 9 6 3.3289 -2.5421 0.1063 10 6 4.6669 -1.9730 -0.2897 11 8 5.1403 -1.0464 0.3335 12 7 5.3377 -2.4936 -1.3364 13 6 4.7543 -3.4636 -2.1106 14 1 4.0469 -4.1518 -1.6719 15 6 5.0732 -3.5611 -3.4588 16 7 4.7945 -4.6609 -4.1222 17 14 5.8983 -2.1291 -4.3294 18 1 7.3668 -2.2025 -4.1206 19 1 5.6010 -2.1956 -5.7827 20 1 5.3832 -0.8506 -3.7767 21 6 6.6280 -2.0448 -1.6328 22 6 7.6850 -2.9455 -1.6796 23 6 8.9592 -2.4978 -1.9668 24 6 9.1841 -1.1546 -2.2082 25 6 8.1341 -0.2554 -2.1635 26 6 6.8572 -0.6961 -1.8768 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 2.6326 -2.4467 -0.7269 35 1 3.4440 -3.5947 0.3649 36 1 5.0169 -4.7288 -5.0639 37 1 7.5103 -3.9945 -1.4910 38 1 9.7814 -3.1972 -2.0029 39 1 10.1818 -0.8071 -2.4321 40 1 8.3133 0.7928 -2.3521 41 1 6.0379 0.0067 -1.8417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171553990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:35 Heat of formation + Delta-G solvation = 103.548032 kcal Electronic energy + Delta-G solvation = -26947.545385 eV Core-core repulsion = 23251.179730 eV Total energy + Delta-G solvation = -3696.365654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.27186 -41.74963 -39.54428 -37.19464 -36.95031 -36.34164 -34.16660 -32.57790 -31.90326 -31.46519 -29.56219 -28.12342 -27.08772 -25.44297 -24.87515 -23.61781 -23.37909 -21.76433 -21.15235 -20.01863 -18.95569 -18.25396 -17.69071 -17.49675 -17.08046 -16.84935 -16.39339 -15.93451 -15.69815 -15.38318 -15.23308 -14.77556 -14.46442 -14.38666 -14.23268 -14.20626 -14.07150 -13.70703 -13.18550 -13.09315 -12.97031 -12.72860 -12.62779 -12.46958 -12.38523 -12.32177 -12.27767 -12.21316 -11.89719 -11.85857 -11.31521 -11.12445 -10.82801 -10.45530 -9.84133 -9.38875 -8.61444 -6.28445 0.11782 0.28033 0.43843 0.86920 1.13193 1.23155 1.38691 1.41822 1.52612 2.19222 2.27284 2.74114 2.89531 2.99033 3.20065 3.59888 3.64894 3.96999 3.99441 4.01871 4.05261 4.05687 4.23216 4.23689 4.39842 4.50847 4.60754 4.65230 4.67668 4.76593 4.81684 4.88796 4.94497 5.06550 5.12856 5.25350 5.26251 5.32833 5.45572 5.52443 5.54067 5.86546 5.92462 6.19578 6.69942 7.12382 7.42333 7.49811 8.47226 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.005040 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.592617 B = 5554.349244 C = 5948.768228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 C -0.137 4.137 4 C 0.208 3.792 5 N -0.323 5.323 6 N -0.104 5.104 7 N -0.109 5.109 8 N -0.287 5.287 9 C 0.114 3.886 10 C 0.466 3.534 11 O -0.592 6.592 12 N -0.412 5.412 13 C -0.363 4.363 14 H 0.115 0.885 15 C 0.057 3.943 16 N -0.878 5.878 17 Si 0.902 3.098 18 H -0.249 1.249 19 H -0.298 1.298 20 H -0.261 1.261 21 C 0.115 3.885 22 C -0.131 4.131 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.137 4.137 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.169 0.831 35 H 0.150 0.850 36 H 0.283 0.717 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 6.684 -1.860 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.195 4.195 4 C -0.069 4.069 5 N -0.172 5.172 6 N -0.098 5.098 7 N -0.095 5.095 8 N -0.088 5.088 9 C -0.010 4.010 10 C 0.255 3.745 11 O -0.476 6.476 12 N -0.127 5.127 13 C -0.488 4.488 14 H 0.133 0.867 15 C -0.151 4.151 16 N -0.513 5.513 17 Si 0.728 3.272 18 H -0.173 1.173 19 H -0.226 1.226 20 H -0.185 1.185 21 C 0.023 3.977 22 C -0.151 4.151 23 C -0.132 4.132 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.157 4.157 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.775 6.799 -0.285 6.849 hybrid contribution 0.415 -0.023 -1.362 1.424 sum -0.360 6.776 -1.647 6.983 Atomic orbital electron populations 1.21825 0.89823 1.03213 1.04447 1.20114 0.98924 0.96307 0.88570 1.21788 1.00177 0.93192 1.04372 1.26694 0.93680 0.88209 0.98354 1.74797 1.21718 1.21481 0.99224 1.78465 1.08087 0.99758 1.23499 1.78767 1.19701 1.22470 0.88569 1.48136 1.32905 1.20982 1.06731 1.22061 0.95682 0.97963 0.85257 1.20528 0.87045 0.83807 0.83135 1.90681 1.69943 1.30390 1.56614 1.41387 1.10226 1.35011 1.26108 1.19234 1.27995 1.10548 0.91002 0.86737 1.25545 0.95584 0.97213 0.96758 1.69749 1.44851 1.25435 1.11216 0.86490 0.81901 0.81575 0.77226 1.17264 1.22573 1.18509 1.17987 0.85639 0.93405 1.00630 1.21280 0.92512 0.99799 1.01472 1.21373 0.96058 0.97012 0.98782 1.21522 1.00154 0.92849 1.00049 1.21336 0.91589 1.01300 0.99790 1.21215 0.98684 0.94537 1.01237 0.91682 0.88133 0.92106 0.87871 0.91530 0.94696 0.88037 0.81362 0.83272 0.90740 0.86158 0.82934 0.82264 0.83281 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.17 71.98 0.66 -1.78 16 2 C -0.02 -0.42 3.26 -11.54 -0.04 -0.46 16 3 C -0.14 -3.20 9.18 71.98 0.66 -2.54 16 4 C 0.21 6.85 6.64 138.14 0.92 7.77 16 5 N -0.32 -11.95 12.36 -50.45 -0.62 -12.57 16 6 N -0.10 -4.25 13.43 37.01 0.50 -3.75 16 7 N -0.11 -4.37 13.29 37.02 0.49 -3.88 16 8 N -0.29 -10.22 2.83 -341.98 -0.97 -11.18 16 9 C 0.11 3.74 5.11 85.63 0.44 4.17 16 10 C 0.47 19.08 7.55 87.66 0.66 19.74 16 11 O -0.59 -27.82 15.44 -3.03 -0.05 -27.87 16 12 N -0.41 -17.57 2.49 -458.90 -1.14 -18.71 16 13 C -0.36 -16.06 9.04 84.02 0.76 -15.30 16 14 H 0.12 5.00 7.04 -2.91 -0.02 4.98 16 15 C 0.06 2.65 5.23 84.91 0.44 3.10 16 16 N -0.88 -43.31 13.96 21.65 0.30 -43.00 16 17 Si 0.90 38.24 23.47 68.60 1.61 39.85 16 18 H -0.25 -10.27 5.48 99.48 0.55 -9.73 16 19 H -0.30 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.02 6.07 99.48 0.60 -10.41 16 21 C 0.11 4.82 2.48 38.22 0.09 4.91 16 22 C -0.13 -5.06 8.05 22.40 0.18 -4.88 16 23 C -0.11 -3.55 9.49 22.25 0.21 -3.34 16 24 C -0.13 -3.62 9.84 22.30 0.22 -3.40 16 25 C -0.12 -3.88 9.82 22.25 0.22 -3.66 16 26 C -0.14 -5.38 5.67 22.41 0.13 -5.25 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.10 2.34 6.85 -2.39 -0.02 2.33 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.17 4.47 7.02 -2.39 -0.02 4.45 16 35 H 0.15 4.48 7.81 -2.39 -0.02 4.46 16 36 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 37 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.11 4.39 7.68 -2.91 -0.02 4.36 16 Total: -1.00 -64.70 342.24 6.46 -58.25 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.78 Total: 23.79 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.55 Total: -0.92 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -1.44 Total: -93.10 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.61 Total: 39.85 kcal Total: -64.70 6.46 -58.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171553990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.796 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds