Wall clock time and date at job start Tue Mar 31 2020 11:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38279 * 119.93422 * 269.72893 * 17 16 14 19 19 C 1.38132 * 120.06226 * 179.72531 * 18 17 16 20 20 C 1.38818 * 119.93297 * 0.56333 * 19 18 17 21 21 N 1.40265 * 120.06104 * 179.68155 * 20 19 18 22 22 C 1.35064 * 127.38980 * 359.73260 * 21 20 19 23 23 N 1.30737 * 107.27341 * 179.89734 * 22 21 20 24 24 N 1.28422 * 110.64621 * 0.38220 * 23 22 21 25 25 N 1.28945 * 110.20398 * 359.76094 * 24 23 22 26 26 C 1.38812 * 119.87139 * 359.71007 * 20 19 18 27 27 C 1.38124 * 119.93741 * 359.97438 * 26 20 19 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 36 36 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 37 37 H 1.08004 * 119.96933 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.02809 * 180.29305 * 19 18 17 39 39 H 1.08008 * 126.35953 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.03292 * 180.02562 * 26 20 19 41 41 H 1.07997 * 119.96919 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4450 3.1017 -2.8741 19 6 -3.7278 3.5987 -2.7495 20 6 -3.9278 4.8907 -2.2828 21 7 -5.2289 5.4004 -2.1616 22 6 -6.3870 4.7718 -2.4585 23 7 -7.3594 5.6054 -2.1962 24 7 -6.8948 6.7208 -1.7612 25 7 -5.6070 6.6774 -1.7107 26 6 -2.8377 5.6774 -1.9370 27 6 -1.5576 5.1728 -2.0575 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8769 0.4828 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 0.7280 4.1540 -2.8668 36 1 0.0680 2.6143 -3.4687 37 1 -2.2885 2.0984 -3.2419 38 1 -4.5740 2.9842 -3.0190 39 1 -6.4904 3.7666 -2.8397 40 1 -2.9903 6.6828 -1.5732 41 1 -0.7090 5.7845 -1.7890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183827217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:50 Heat of formation + Delta-G solvation = 113.291870 kcal Electronic energy + Delta-G solvation = -25182.248170 eV Core-core repulsion = 21486.305040 eV Total energy + Delta-G solvation = -3695.943130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.50360 -40.21547 -39.02546 -35.91241 -35.19523 -32.69841 -32.60881 -32.18755 -31.42535 -31.34001 -28.27863 -27.18459 -24.75092 -24.30251 -22.80292 -22.10968 -21.97874 -20.70185 -19.67830 -19.00189 -17.42761 -16.91289 -16.59453 -16.22388 -15.98954 -15.90671 -15.44467 -14.77323 -14.55528 -14.25625 -13.92921 -13.69738 -13.57824 -13.41262 -13.04038 -12.83940 -12.69523 -12.22000 -12.06698 -11.85301 -11.69949 -11.64843 -11.39223 -11.33558 -11.13825 -10.97122 -10.83741 -10.70351 -10.00372 -9.65897 -9.41303 -9.35016 -9.27461 -8.83032 -8.74984 -8.16744 -6.28008 -4.30967 0.01459 0.95234 1.31598 1.43658 1.93498 3.09698 3.17651 3.25145 3.30392 3.34344 3.68436 3.89257 3.95255 4.24967 4.37162 4.43136 4.51426 4.54467 4.95165 4.99432 5.02194 5.05762 5.16507 5.30462 5.32245 5.41612 5.60709 5.77206 5.85039 5.87565 5.93727 6.06019 6.09171 6.22373 6.49071 6.56362 6.61586 6.75724 6.85968 7.17520 7.21331 7.43451 8.05722 8.06049 8.43300 8.68125 8.83433 9.32704 10.83990 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.002606 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.924793 B =10740.118358 C =10938.302840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.700 5.700 14 C 0.503 3.497 15 O -0.543 6.543 16 C -0.112 4.112 17 C -0.038 4.038 18 C -0.083 4.083 19 C -0.116 4.116 20 C 0.115 3.885 21 N -0.318 5.318 22 C 0.223 3.777 23 N -0.333 5.333 24 N -0.039 5.039 25 N -0.078 5.078 26 C -0.096 4.096 27 C -0.083 4.083 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.239 0.761 40 H 0.140 0.860 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.791 3.830 -12.501 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.288 3.712 15 O -0.421 6.421 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.023 3.977 21 N -0.108 5.108 22 C -0.074 4.074 23 N -0.182 5.182 24 N -0.034 5.034 25 N -0.063 5.063 26 C -0.116 4.116 27 C -0.102 4.102 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.255 0.745 40 H 0.158 0.842 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.782 5.018 -11.253 20.819 hybrid contribution 0.518 -1.417 0.192 1.521 sum -16.263 3.601 -11.060 19.995 Atomic orbital electron populations 1.21867 0.96967 0.98973 1.02177 1.22289 0.94312 1.00006 1.01143 1.19144 0.95617 0.88460 0.82819 0.93348 1.21042 0.88604 1.39942 1.07883 0.90183 1.24836 0.94859 0.95131 0.97673 1.69862 1.08694 1.44383 1.29832 0.86909 0.80947 0.79941 0.80970 1.20236 1.22138 1.18506 1.46177 1.14756 1.55844 1.18041 1.20191 0.82728 0.79464 0.88853 1.90708 1.51386 1.59609 1.40429 1.20819 0.94045 1.02092 0.98282 1.19585 0.94741 0.93583 0.96017 1.20869 0.90641 0.99761 0.98851 1.20757 0.98726 0.92661 1.01573 1.17553 0.79703 0.94480 1.05979 1.49093 1.07166 1.11307 1.43268 1.27413 0.80782 1.01702 0.97477 1.74475 1.26979 0.98183 1.18594 1.78075 1.01109 1.14203 1.10057 1.82671 1.08275 0.96823 1.18506 1.20899 0.90820 1.00379 0.99534 1.20999 0.96498 0.95371 0.97314 0.95032 0.92937 0.92983 0.92296 0.92790 0.92227 0.77136 0.87698 0.87856 0.84437 0.84875 0.74539 0.84211 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.51 37.16 0.32 -2.33 16 2 C -0.14 -2.88 5.11 -26.73 -0.14 -3.02 16 3 C 0.24 5.34 1.83 -69.08 -0.13 5.22 16 4 H 0.05 1.20 6.63 -51.93 -0.34 0.86 16 5 C -0.54 -13.76 9.31 -34.44 -0.32 -14.08 16 6 H 0.08 2.15 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 9 Si 0.88 21.11 24.41 -169.99 -4.15 16.96 16 10 H -0.28 -6.38 6.83 56.52 0.39 -6.00 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.70 -12.03 5.02 -54.93 -0.28 -12.31 16 14 C 0.50 7.77 6.39 -10.98 -0.07 7.70 16 15 O -0.54 -10.37 13.17 5.56 0.07 -10.30 16 16 C -0.11 -1.11 5.83 -29.04 -0.17 -1.28 16 17 C -0.04 -0.38 4.37 -104.60 -0.46 -0.84 16 18 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 19 C -0.12 -0.91 9.49 -39.41 -0.37 -1.29 16 20 C 0.11 1.12 6.70 -83.57 -0.56 0.56 16 21 N -0.32 -3.32 3.85 -11.74 -0.05 -3.36 16 22 C 0.22 1.87 12.16 -90.16 -1.10 0.77 16 23 N -0.33 -3.88 12.15 29.64 0.36 -3.52 16 24 N -0.04 -0.53 13.39 60.35 0.81 0.28 16 25 N -0.08 -1.00 13.34 60.35 0.80 -0.19 16 26 C -0.10 -0.98 9.70 -39.41 -0.38 -1.36 16 27 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.05 7.85 -51.93 -0.41 0.65 16 30 H 0.05 0.91 5.64 -51.93 -0.29 0.61 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.20 3.22 -51.93 -0.17 1.04 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.40 5.84 8.54 -40.82 -0.35 5.49 16 35 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.13 0.59 6.88 -52.49 -0.36 0.23 16 39 H 0.24 0.67 7.19 -52.48 -0.38 0.29 16 40 H 0.14 1.37 7.77 -52.48 -0.41 0.96 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -33.61 342.59 -5.57 -39.18 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.84 Total: 3.21 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -4.24 Total: -10.22 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 2.43 Total: -43.98 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.15 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.61 -5.57 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183827217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.468 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds