Wall clock time and date at job start Tue Mar 31 2020 11:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38279 * 119.93422 * 269.72893 * 17 16 14 19 19 C 1.38132 * 120.06226 * 179.72531 * 18 17 16 20 20 C 1.38818 * 119.93297 * 0.56333 * 19 18 17 21 21 N 1.40265 * 120.06104 * 179.68155 * 20 19 18 22 22 C 1.35064 * 127.38980 * 359.73260 * 21 20 19 23 23 N 1.30737 * 107.27341 * 179.89734 * 22 21 20 24 24 N 1.28422 * 110.64621 * 0.38220 * 23 22 21 25 25 N 1.28945 * 110.20398 * 359.76094 * 24 23 22 26 26 C 1.38812 * 119.87139 * 359.71007 * 20 19 18 27 27 C 1.38124 * 119.93741 * 359.97438 * 26 20 19 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 36 36 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 37 37 H 1.08004 * 119.96933 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.02809 * 180.29305 * 19 18 17 39 39 H 1.08008 * 126.35953 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.03292 * 180.02562 * 26 20 19 41 41 H 1.07997 * 119.96919 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4450 3.1017 -2.8741 19 6 -3.7278 3.5987 -2.7495 20 6 -3.9278 4.8907 -2.2828 21 7 -5.2289 5.4004 -2.1616 22 6 -6.3870 4.7718 -2.4585 23 7 -7.3594 5.6054 -2.1962 24 7 -6.8948 6.7208 -1.7612 25 7 -5.6070 6.6774 -1.7107 26 6 -2.8377 5.6774 -1.9370 27 6 -1.5576 5.1728 -2.0575 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8769 0.4828 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 0.7280 4.1540 -2.8668 36 1 0.0680 2.6143 -3.4687 37 1 -2.2885 2.0984 -3.2419 38 1 -4.5740 2.9842 -3.0190 39 1 -6.4904 3.7666 -2.8397 40 1 -2.9903 6.6828 -1.5732 41 1 -0.7090 5.7845 -1.7890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183827217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:49 Heat of formation + Delta-G solvation = 90.351165 kcal Electronic energy + Delta-G solvation = -25183.242953 eV Core-core repulsion = 21486.305040 eV Total energy + Delta-G solvation = -3696.937913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.30304 -41.14229 -40.11726 -37.19505 -36.30185 -34.36422 -33.52009 -33.49103 -32.52171 -32.07368 -29.65114 -28.42760 -25.61569 -25.04490 -24.50709 -23.02055 -22.79601 -21.99741 -21.09261 -19.70079 -19.09240 -17.72836 -17.65159 -17.44126 -17.23589 -16.78173 -16.58454 -15.92359 -15.86575 -15.23157 -15.03293 -14.74409 -14.62469 -14.33678 -14.31635 -14.08957 -13.77325 -13.72160 -13.56557 -13.06278 -12.74590 -12.72119 -12.66008 -12.44259 -12.32354 -12.16030 -12.03757 -11.83658 -11.66516 -11.35344 -11.19928 -10.85174 -10.63606 -10.06692 -9.67755 -9.52542 -8.37429 -6.41922 -0.71612 0.29537 0.54994 0.72777 1.16064 1.26198 1.35262 1.43784 1.90620 2.25837 2.42570 2.85198 2.99272 3.03330 3.31845 3.67666 3.75097 3.81721 3.90653 4.15426 4.20800 4.29039 4.30339 4.36331 4.39861 4.49682 4.55296 4.65935 4.75223 4.89159 4.96625 5.06548 5.08931 5.17082 5.18641 5.27790 5.38950 5.45571 5.53470 5.57127 5.73887 5.83125 6.17445 6.61923 6.99503 7.22339 7.23878 7.59169 8.77714 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.002606 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.924793 B =10740.118358 C =10938.302840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.298 1.298 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.503 3.497 15 O -0.579 6.579 16 C -0.099 4.099 17 C -0.053 4.053 18 C -0.084 4.084 19 C -0.105 4.105 20 C 0.102 3.898 21 N -0.321 5.321 22 C 0.241 3.759 23 N -0.359 5.359 24 N -0.064 5.064 25 N -0.107 5.107 26 C -0.113 4.113 27 C -0.095 4.095 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.269 0.731 34 H 0.408 0.592 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.294 0.706 40 H 0.131 0.869 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 1.897 -14.433 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.036 0.964 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.226 1.226 12 H -0.186 1.186 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.460 6.460 16 C -0.138 4.138 17 C -0.054 4.054 18 C -0.103 4.103 19 C -0.126 4.126 20 C 0.011 3.989 21 N -0.111 5.111 22 C -0.054 4.054 23 N -0.209 5.209 24 N -0.059 5.059 25 N -0.093 5.093 26 C -0.134 4.134 27 C -0.114 4.114 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.309 0.691 40 H 0.149 0.851 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.586 3.096 -13.223 23.019 hybrid contribution 1.083 -0.780 0.720 1.516 sum -17.503 2.316 -12.503 21.635 Atomic orbital electron populations 1.21747 0.94964 1.00413 1.01736 1.22202 0.96042 0.98511 1.00881 1.18708 0.92836 0.89666 0.84280 0.96404 1.21350 0.90665 1.38085 1.06726 0.92341 1.25535 0.95623 0.96083 0.99874 1.69975 1.10258 1.46367 1.30816 0.86065 0.79272 0.79977 0.78412 1.18619 1.22564 1.18633 1.46011 1.16111 1.56298 1.16775 1.21095 0.81273 0.78276 0.90341 1.90699 1.52244 1.60693 1.42359 1.20798 0.94353 1.03020 0.95644 1.19728 0.95324 0.93660 0.96706 1.21237 0.90406 1.00562 0.98067 1.21188 0.99954 0.91786 0.99662 1.17808 0.79153 0.95394 1.06595 1.49148 1.07973 1.10785 1.43165 1.28446 0.79169 1.02719 0.95091 1.74401 1.28434 0.98409 1.19617 1.78058 1.01472 1.15386 1.10946 1.82621 1.08212 0.98659 1.19759 1.20945 0.91515 1.00485 1.00406 1.21111 0.96522 0.96015 0.97743 0.92562 0.95038 0.91762 0.91082 0.94443 0.92221 0.75681 0.85706 0.84276 0.81944 0.80773 0.69132 0.85099 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.51 71.98 0.61 -3.91 16 2 C -0.14 -5.46 5.11 30.60 0.16 -5.30 16 3 C 0.25 10.85 1.83 44.25 0.08 10.93 16 4 H 0.02 0.90 6.63 -2.39 -0.02 0.88 16 5 C -0.53 -27.39 9.31 25.60 0.24 -27.15 16 6 H 0.06 3.20 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.56 5.45 84.65 0.46 2.02 16 8 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 9 Si 0.93 43.82 24.41 68.60 1.67 45.49 16 10 H -0.26 -11.46 6.83 99.48 0.68 -10.79 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.26 -12.19 6.53 99.48 0.65 -11.54 16 13 N -0.70 -22.98 5.02 -446.09 -2.24 -25.22 16 14 C 0.50 14.38 6.39 87.66 0.56 14.94 16 15 O -0.58 -21.24 13.17 -3.02 -0.04 -21.28 16 16 C -0.10 -1.60 5.83 29.10 0.17 -1.43 16 17 C -0.05 -0.91 4.37 -19.85 -0.09 -1.00 16 18 C -0.08 -1.10 9.69 22.25 0.22 -0.89 16 19 C -0.11 -1.21 9.49 22.38 0.21 -1.00 16 20 C 0.10 1.78 6.70 38.07 0.26 2.03 16 21 N -0.32 -6.14 3.85 -191.06 -0.74 -6.88 16 22 C 0.24 3.33 12.16 180.19 2.19 5.52 16 23 N -0.36 -7.89 12.15 -60.13 -0.73 -8.62 16 24 N -0.06 -1.72 13.39 37.02 0.50 -1.22 16 25 N -0.11 -2.76 13.34 37.02 0.49 -2.27 16 26 C -0.11 -2.25 9.70 22.38 0.22 -2.04 16 27 C -0.10 -1.81 9.69 22.25 0.22 -1.59 16 28 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.03 1.20 7.85 -2.39 -0.02 1.18 16 30 H 0.06 2.03 5.64 -2.39 -0.01 2.02 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.04 1.60 3.22 -2.39 -0.01 1.60 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.41 11.26 8.54 -92.71 -0.79 10.47 16 35 H 0.12 1.57 8.09 -2.39 -0.02 1.55 16 36 H 0.14 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.17 0.45 6.88 -2.91 -0.02 0.43 16 39 H 0.29 0.05 7.19 -2.91 -0.02 0.03 16 40 H 0.13 2.71 7.77 -2.91 -0.02 2.69 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -76.66 342.59 4.92 -71.74 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.21 Total: 11.69 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.50 Total: -8.86 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -2.42 Total: -98.78 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Total: -76.66 4.92 -71.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183827217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.088 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds