Wall clock time and date at job start Tue Mar 31 2020 11:22:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52997 * 109.47199 * 2 1
4 4 H 1.08996 * 109.47502 * 55.00367 * 3 2 1
5 5 C 1.50705 * 109.46589 * 174.99930 * 3 2 1
6 6 H 1.08004 * 119.99907 * 119.99981 * 5 3 2
7 7 C 1.37877 * 120.00050 * 299.99808 * 5 3 2
8 8 N 1.31510 * 120.00010 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99886 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47438 * 59.99972 * 9 7 5
11 11 H 1.48497 * 109.46982 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47102 * 299.99678 * 9 7 5
13 13 N 1.46496 * 109.46973 * 294.99447 * 3 2 1
14 14 C 1.34777 * 119.99776 * 85.00530 * 13 3 2
15 15 O 1.21280 * 120.00028 * 0.02562 * 14 13 3
16 16 C 1.50698 * 120.00074 * 179.97438 * 14 13 3
17 17 N 1.46495 * 109.47395 * 179.97438 * 16 14 13
18 18 N 1.28733 * 125.33912 * 90.02443 * 17 16 14
19 19 N 1.28984 * 108.94425 * 180.02562 * 18 17 16
20 20 C 1.34049 * 107.26777 * 0.02562 * 19 18 17
21 21 C 1.48467 * 126.67288 * 179.97438 * 20 19 18
22 22 C 1.39294 * 120.11716 * 179.75263 * 21 20 19
23 23 C 1.38030 * 119.88324 * 179.77152 * 22 21 20
24 24 C 1.38314 * 120.11405 * 0.47699 * 23 22 21
25 25 C 1.38316 * 120.23707 * 359.79547 * 24 23 22
26 26 C 1.38025 * 120.12033 * 359.95400 * 25 24 23
27 27 N 1.28876 * 125.34499 * 270.02951 * 17 16 14
28 28 H 1.09008 * 109.46855 * 59.99761 * 1 2 3
29 29 H 1.08991 * 109.47861 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.46993 * 300.00348 * 1 2 3
31 31 H 1.08997 * 109.47083 * 239.99220 * 2 1 3
32 32 H 1.09004 * 109.46371 * 120.00198 * 2 1 3
33 33 H 0.97003 * 120.00571 * 180.02562 * 8 7 5
34 34 H 0.96999 * 120.00055 * 264.99886 * 13 3 2
35 35 H 1.09006 * 109.46839 * 60.00297 * 16 14 13
36 36 H 1.09005 * 109.47491 * 300.00317 * 16 14 13
37 37 H 1.08004 * 120.05618 * 0.02562 * 22 21 20
38 38 H 1.08002 * 119.94482 * 180.27510 * 23 22 21
39 39 H 1.07999 * 119.87839 * 179.76814 * 24 23 22
40 40 H 1.08007 * 119.93915 * 179.97438 * 25 24 23
41 41 H 1.08001 * 120.06518 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9815 0.8418
5 6 3.5420 1.4441 0.1239
6 1 4.1473 1.8886 -0.6523
7 6 4.1433 0.8782 1.2280
8 7 3.4062 0.3365 2.1729
9 14 6.0049 0.8809 1.3818
10 1 6.4996 2.2810 1.3821
11 1 6.3977 0.2163 2.6504
12 1 6.5974 0.1468 0.2350
13 7 1.6526 2.0974 -1.2518
14 6 0.4353 2.6643 -1.3670
15 8 -0.3391 2.6328 -0.4342
16 6 0.0369 3.3385 -2.6545
17 7 -1.3220 3.8707 -2.5270
18 7 -1.6237 5.0497 -2.1073
19 7 -2.9064 5.1840 -2.1221
20 6 -3.4220 4.0314 -2.5724
21 6 -4.8608 3.7170 -2.7598
22 6 -5.2462 2.4691 -3.2443
23 6 -6.5855 2.1803 -3.4121
24 6 -7.5437 3.1307 -3.1095
25 6 -7.1662 4.3733 -2.6334
26 6 -5.8300 4.6708 -2.4570
27 7 -2.4031 3.2319 -2.8173
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0275 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8932 -0.5139 0.8900
33 1 3.8291 -0.0614 2.9499
34 1 2.2721 2.1230 -1.9978
35 1 0.0682 2.6144 -3.4687
36 1 0.7284 4.1540 -2.8669
37 1 -4.4986 1.7276 -3.4843
38 1 -6.8856 1.2115 -3.7835
39 1 -8.5903 2.9019 -3.2458
40 1 -7.9184 5.1120 -2.3990
41 1 -5.5362 5.6412 -2.0848
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183845866.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:55
Heat of formation + Delta-G solvation = 115.863003 kcal
Electronic energy + Delta-G solvation = -25244.901789 eV
Core-core repulsion = 21549.070152 eV
Total energy + Delta-G solvation = -3695.831637 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.19727 -39.44092 -39.17003 -35.57042 -34.73559 -33.48283 -32.64205 -31.49695
-31.13246 -30.80391 -28.82457 -26.92296 -24.50338 -23.87991 -23.05739 -22.15787
-21.59506 -20.69379 -19.62091 -18.13586 -17.90032 -17.06838 -16.51972 -15.88447
-15.72875 -15.36912 -15.09299 -14.98421 -14.32071 -14.06290 -13.74551 -13.59451
-13.43151 -13.14007 -13.00340 -12.78627 -12.17124 -11.93426 -11.58863 -11.55403
-11.36100 -11.32705 -11.11169 -11.05373 -10.91070 -10.87242 -10.80294 -10.43656
-10.31753 -9.76294 -9.38646 -9.19305 -9.15551 -8.73469 -8.61725 -8.09178
-6.22087 -4.32975 0.68542 1.20041 1.34132 1.83154 2.44527 2.91211
3.19520 3.25570 3.25994 3.63394 3.67427 3.75016 4.19709 4.26340
4.66466 4.75168 4.75632 4.90074 4.94409 5.05006 5.10114 5.20947
5.40518 5.42343 5.69213 5.79818 5.84425 6.07398 6.27027 6.27811
6.28385 6.33131 6.33369 6.53306 6.70793 6.90269 7.05032 7.14104
7.24783 7.45977 7.56867 7.75022 8.04557 8.35214 8.40131 8.58353
8.81840 9.34239 10.83156
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.028311 B = 0.002618 C = 0.002498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.773367 B =10693.257451 C =11208.473093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.128 4.128
3 C 0.272 3.728
4 H 0.051 0.949
5 C -0.539 4.539
6 H 0.063 0.937
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.903 3.097
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.275 1.275
13 N -0.695 5.695
14 C 0.491 3.509
15 O -0.527 6.527
16 C 0.103 3.897
17 N -0.113 5.113
18 N -0.046 5.046
19 N -0.277 5.277
20 C 0.201 3.799
21 C -0.005 4.005
22 C -0.082 4.082
23 C -0.123 4.123
24 C -0.107 4.107
25 C -0.123 4.123
26 C -0.080 4.080
27 N -0.287 5.287
28 H 0.036 0.964
29 H 0.025 0.975
30 H 0.048 0.952
31 H 0.033 0.967
32 H 0.101 0.899
33 H 0.267 0.733
34 H 0.392 0.608
35 H 0.140 0.860
36 H 0.143 0.857
37 H 0.133 0.867
38 H 0.128 0.872
39 H 0.125 0.875
40 H 0.129 0.871
41 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.556 4.294 -13.670 20.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.166 4.166
3 C 0.171 3.829
4 H 0.069 0.931
5 C -0.577 4.577
6 H 0.081 0.919
7 C -0.136 4.136
8 N -0.518 5.518
9 Si 0.731 3.269
10 H -0.201 1.201
11 H -0.211 1.211
12 H -0.201 1.201
13 N -0.344 5.344
14 C 0.271 3.729
15 O -0.404 6.404
16 C -0.022 4.022
17 N -0.024 5.024
18 N -0.039 5.039
19 N -0.149 5.149
20 C -0.078 4.078
21 C -0.008 4.008
22 C -0.102 4.102
23 C -0.141 4.141
24 C -0.126 4.126
25 C -0.141 4.141
26 C -0.100 4.100
27 N -0.137 5.137
28 H 0.055 0.945
29 H 0.044 0.956
30 H 0.068 0.932
31 H 0.052 0.948
32 H 0.119 0.881
33 H 0.077 0.923
34 H 0.225 0.775
35 H 0.158 0.842
36 H 0.161 0.839
37 H 0.151 0.849
38 H 0.146 0.854
39 H 0.143 0.857
40 H 0.146 0.854
41 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -14.424 4.508 -12.613 19.684
hybrid contribution 1.084 -0.404 -0.290 1.193
sum -13.340 4.104 -12.903 19.007
Atomic orbital electron populations
1.21837 0.98306 0.98276 1.01057 1.21953 0.92540 0.99581 1.02573
1.18893 0.94497 0.89214 0.80270 0.93104 1.21142 0.90324 1.39650
1.06578 0.91928 1.24887 0.98790 0.94633 0.95287 1.69873 1.35411
1.37166 1.09311 0.86477 0.84533 0.78386 0.77545 1.20105 1.21084
1.20096 1.46434 1.13531 1.55264 1.19192 1.19972 0.84095 0.80682
0.88133 1.90799 1.51108 1.59011 1.39447 1.22270 0.76045 1.02498
1.01375 1.49343 1.07714 1.07472 1.37885 1.78910 1.08978 1.02812
1.13188 1.75965 0.98961 1.21818 1.18134 1.23518 0.94877 0.88016
1.01396 1.17288 0.85376 0.95358 1.02818 1.21232 0.96725 0.95354
0.96916 1.21093 0.92388 0.99796 1.00834 1.21306 0.99674 0.93592
0.98022 1.21090 0.95545 0.97251 1.00249 1.21216 0.92158 0.99171
0.97487 1.74830 0.92544 1.24282 1.22078 0.94524 0.95606 0.93250
0.94784 0.88059 0.92334 0.77469 0.84191 0.83878 0.84928 0.85378
0.85722 0.85351 0.84700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.99 8.52 37.16 0.32 -2.68 16
2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16
3 C 0.27 6.43 2.24 -69.08 -0.15 6.27 16
4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16
5 C -0.54 -13.40 8.73 -34.44 -0.30 -13.70 16
6 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16
7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16
8 N -0.88 -23.96 11.29 55.43 0.63 -23.34 16
9 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16
10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16
12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
13 N -0.70 -12.68 5.02 -54.94 -0.28 -12.95 16
14 C 0.49 8.73 6.47 -10.99 -0.07 8.66 16
15 O -0.53 -11.95 13.57 5.56 0.08 -11.88 16
16 C 0.10 1.28 7.08 -5.20 -0.04 1.25 16
17 N -0.11 -1.80 3.48 -11.68 -0.04 -1.84 16
18 N -0.05 -0.79 13.23 60.35 0.80 0.00 16
19 N -0.28 -4.74 12.23 32.16 0.39 -4.35 16
20 C 0.20 3.21 7.94 -156.30 -1.24 1.97 16
21 C -0.01 -0.07 5.88 -104.89 -0.62 -0.68 16
22 C -0.08 -0.93 9.70 -39.27 -0.38 -1.32 16
23 C -0.12 -1.10 10.03 -39.63 -0.40 -1.50 16
24 C -0.11 -0.87 10.04 -39.52 -0.40 -1.26 16
25 C -0.12 -1.08 10.03 -39.63 -0.40 -1.48 16
26 C -0.08 -0.90 9.70 -39.26 -0.38 -1.28 16
27 N -0.29 -4.67 11.85 32.17 0.38 -4.29 16
28 H 0.04 0.77 5.65 -51.92 -0.29 0.48 16
29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16
31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16
33 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16
34 H 0.39 5.73 8.54 -40.82 -0.35 5.38 16
35 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16
36 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16
37 H 0.13 1.48 7.88 -52.48 -0.41 1.07 16
38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16
39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16
40 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16
41 H 0.14 1.45 7.89 -52.49 -0.41 1.04 16
LS Contribution 352.75 15.07 5.32 5.32
Total: -1.00 -32.76 352.75 -7.12 -39.88
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: -5.08 Total: 5.79 kcal
Atomic # 6 Polarization: -2.90 SS G_CDS: -4.30 Total: -7.19 kcal
Atomic # 7 Polarization: -48.64 SS G_CDS: 1.88 Total: -46.76 kcal
Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.88 kcal
Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -32.76 -7.12 -39.88 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183845866.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.746 kcal
(2) G-P(sol) polarization free energy of solvation -32.758 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) 115.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds