Wall clock time and date at job start Tue Mar 31 2020 11:22:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52997 * 109.47199 * 2 1
4 4 H 1.08996 * 109.47502 * 55.00367 * 3 2 1
5 5 C 1.50705 * 109.46589 * 174.99930 * 3 2 1
6 6 H 1.08004 * 119.99907 * 119.99981 * 5 3 2
7 7 C 1.37877 * 120.00050 * 299.99808 * 5 3 2
8 8 N 1.31510 * 120.00010 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99886 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47438 * 59.99972 * 9 7 5
11 11 H 1.48497 * 109.46982 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47102 * 299.99678 * 9 7 5
13 13 N 1.46496 * 109.46973 * 294.99447 * 3 2 1
14 14 C 1.34777 * 119.99776 * 85.00530 * 13 3 2
15 15 O 1.21280 * 120.00028 * 0.02562 * 14 13 3
16 16 C 1.50698 * 120.00074 * 179.97438 * 14 13 3
17 17 N 1.46495 * 109.47395 * 179.97438 * 16 14 13
18 18 N 1.28733 * 125.33912 * 90.02443 * 17 16 14
19 19 N 1.28984 * 108.94425 * 180.02562 * 18 17 16
20 20 C 1.34049 * 107.26777 * 0.02562 * 19 18 17
21 21 C 1.48467 * 126.67288 * 179.97438 * 20 19 18
22 22 C 1.39294 * 120.11716 * 179.75263 * 21 20 19
23 23 C 1.38030 * 119.88324 * 179.77152 * 22 21 20
24 24 C 1.38314 * 120.11405 * 0.47699 * 23 22 21
25 25 C 1.38316 * 120.23707 * 359.79547 * 24 23 22
26 26 C 1.38025 * 120.12033 * 359.95400 * 25 24 23
27 27 N 1.28876 * 125.34499 * 270.02951 * 17 16 14
28 28 H 1.09008 * 109.46855 * 59.99761 * 1 2 3
29 29 H 1.08991 * 109.47861 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.46993 * 300.00348 * 1 2 3
31 31 H 1.08997 * 109.47083 * 239.99220 * 2 1 3
32 32 H 1.09004 * 109.46371 * 120.00198 * 2 1 3
33 33 H 0.97003 * 120.00571 * 180.02562 * 8 7 5
34 34 H 0.96999 * 120.00055 * 264.99886 * 13 3 2
35 35 H 1.09006 * 109.46839 * 60.00297 * 16 14 13
36 36 H 1.09005 * 109.47491 * 300.00317 * 16 14 13
37 37 H 1.08004 * 120.05618 * 0.02562 * 22 21 20
38 38 H 1.08002 * 119.94482 * 180.27510 * 23 22 21
39 39 H 1.07999 * 119.87839 * 179.76814 * 24 23 22
40 40 H 1.08007 * 119.93915 * 179.97438 * 25 24 23
41 41 H 1.08001 * 120.06518 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9815 0.8418
5 6 3.5420 1.4441 0.1239
6 1 4.1473 1.8886 -0.6523
7 6 4.1433 0.8782 1.2280
8 7 3.4062 0.3365 2.1729
9 14 6.0049 0.8809 1.3818
10 1 6.4996 2.2810 1.3821
11 1 6.3977 0.2163 2.6504
12 1 6.5974 0.1468 0.2350
13 7 1.6526 2.0974 -1.2518
14 6 0.4353 2.6643 -1.3670
15 8 -0.3391 2.6328 -0.4342
16 6 0.0369 3.3385 -2.6545
17 7 -1.3220 3.8707 -2.5270
18 7 -1.6237 5.0497 -2.1073
19 7 -2.9064 5.1840 -2.1221
20 6 -3.4220 4.0314 -2.5724
21 6 -4.8608 3.7170 -2.7598
22 6 -5.2462 2.4691 -3.2443
23 6 -6.5855 2.1803 -3.4121
24 6 -7.5437 3.1307 -3.1095
25 6 -7.1662 4.3733 -2.6334
26 6 -5.8300 4.6708 -2.4570
27 7 -2.4031 3.2319 -2.8173
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0275 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8932 -0.5139 0.8900
33 1 3.8291 -0.0614 2.9499
34 1 2.2721 2.1230 -1.9978
35 1 0.0682 2.6144 -3.4687
36 1 0.7284 4.1540 -2.8669
37 1 -4.4986 1.7276 -3.4843
38 1 -6.8856 1.2115 -3.7835
39 1 -8.5903 2.9019 -3.2458
40 1 -7.9184 5.1120 -2.3990
41 1 -5.5362 5.6412 -2.0848
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183845866.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:54
Heat of formation + Delta-G solvation = 93.749232 kcal
Electronic energy + Delta-G solvation = -25245.860714 eV
Core-core repulsion = 21549.070152 eV
Total energy + Delta-G solvation = -3696.790562 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-45.39692 -40.93030 -39.98263 -37.22039 -36.05856 -34.61344 -34.42656 -33.08471
-32.03434 -31.80735 -30.10343 -28.68354 -25.53462 -25.35023 -24.56985 -23.13824
-22.53185 -22.20102 -21.33187 -19.57823 -19.00096 -18.27811 -17.87767 -17.27702
-17.04550 -16.78826 -16.46497 -15.94012 -15.83862 -15.09826 -14.98508 -14.76666
-14.62236 -14.36273 -14.32333 -13.93157 -13.69754 -13.45331 -13.20817 -13.06062
-12.93021 -12.66708 -12.37795 -12.35344 -12.23060 -12.19563 -12.11119 -11.92244
-11.87346 -11.63419 -11.10807 -10.89399 -10.55131 -9.90267 -9.79385 -9.62093
-8.17720 -6.35492 -0.25085 0.14416 0.45721 0.74530 1.38459 1.45914
1.47329 1.52794 1.55241 2.24726 2.47157 2.66430 2.89892 3.11859
3.12998 3.66630 3.79378 3.91087 4.06485 4.10836 4.21236 4.37839
4.43298 4.50594 4.55198 4.56699 4.66075 4.69626 4.90421 4.98930
5.00699 5.12578 5.19978 5.36663 5.45387 5.51236 5.51608 5.56509
5.56643 5.73753 5.85202 6.00146 6.12493 6.71159 6.76555 7.17648
7.27500 7.42449 8.87451
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.028311 B = 0.002618 C = 0.002498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.773367 B =10693.257451 C =11208.473093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.120 4.120
3 C 0.281 3.719
4 H -0.004 1.004
5 C -0.546 4.546
6 H 0.080 0.920
7 C 0.015 3.985
8 N -0.917 5.917
9 Si 0.970 3.030
10 H -0.271 1.271
11 H -0.291 1.291
12 H -0.262 1.262
13 N -0.687 5.687
14 C 0.489 3.511
15 O -0.581 6.581
16 C 0.107 3.893
17 N -0.114 5.114
18 N -0.065 5.065
19 N -0.298 5.298
20 C 0.199 3.801
21 C -0.040 4.040
22 C -0.094 4.094
23 C -0.122 4.122
24 C -0.097 4.097
25 C -0.121 4.121
26 C -0.092 4.092
27 N -0.300 5.300
28 H 0.043 0.957
29 H 0.045 0.955
30 H 0.017 0.983
31 H 0.049 0.951
32 H 0.071 0.929
33 H 0.264 0.736
34 H 0.414 0.586
35 H 0.185 0.815
36 H 0.186 0.814
37 H 0.127 0.873
38 H 0.155 0.845
39 H 0.161 0.839
40 H 0.157 0.843
41 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.205 4.074 -16.186 22.578
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.159 4.159
3 C 0.177 3.823
4 H 0.014 0.986
5 C -0.585 4.585
6 H 0.098 0.902
7 C -0.186 4.186
8 N -0.555 5.555
9 Si 0.795 3.205
10 H -0.196 1.196
11 H -0.217 1.217
12 H -0.186 1.186
13 N -0.338 5.338
14 C 0.273 3.727
15 O -0.461 6.461
16 C -0.015 4.015
17 N -0.026 5.026
18 N -0.058 5.058
19 N -0.169 5.169
20 C -0.080 4.080
21 C -0.043 4.043
22 C -0.114 4.114
23 C -0.140 4.140
24 C -0.115 4.115
25 C -0.138 4.138
26 C -0.112 4.112
27 N -0.150 5.150
28 H 0.062 0.938
29 H 0.064 0.936
30 H 0.036 0.964
31 H 0.068 0.932
32 H 0.089 0.911
33 H 0.073 0.927
34 H 0.251 0.749
35 H 0.202 0.798
36 H 0.203 0.797
37 H 0.145 0.855
38 H 0.173 0.827
39 H 0.178 0.822
40 H 0.175 0.825
41 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -15.051 4.307 -15.187 21.811
hybrid contribution 1.151 -0.338 0.493 1.297
sum -13.899 3.969 -14.694 20.612
Atomic orbital electron populations
1.21665 0.97380 0.99069 0.99834 1.21790 0.93215 0.99164 1.01735
1.18402 0.93863 0.89083 0.80927 0.98636 1.21548 0.91079 1.38973
1.06854 0.90233 1.25779 1.03279 0.94412 0.95086 1.70045 1.37231
1.38336 1.09910 0.85423 0.79117 0.78448 0.77514 1.19648 1.21683
1.18622 1.46059 1.14498 1.55014 1.18191 1.20752 0.82969 0.79650
0.89357 1.90790 1.52544 1.60799 1.41992 1.22577 0.75468 1.04620
0.98848 1.49615 1.08508 1.07118 1.37311 1.78823 1.09308 1.03781
1.13866 1.75916 0.99107 1.22806 1.19047 1.24120 0.96156 0.87438
1.00270 1.17531 0.84347 0.96934 1.05485 1.21325 0.98015 0.94647
0.97450 1.21445 0.91355 1.01213 0.99979 1.21764 1.01279 0.92674
0.95812 1.21452 0.94867 0.98347 0.99165 1.21330 0.93161 0.98757
0.97996 1.74805 0.92834 1.24483 1.22856 0.93799 0.93633 0.96372
0.93221 0.91082 0.92656 0.74936 0.79775 0.79706 0.85504 0.82730
0.82177 0.82531 0.85268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.42 8.52 71.98 0.61 -4.81 16
2 C -0.12 -5.65 5.45 30.59 0.17 -5.48 16
3 C 0.28 13.51 2.24 44.25 0.10 13.61 16
4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16
5 C -0.55 -27.10 8.73 25.60 0.22 -26.88 16
6 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16
7 C 0.01 0.76 5.29 84.66 0.45 1.21 16
8 N -0.92 -51.46 11.29 21.45 0.24 -51.22 16
9 Si 0.97 40.56 29.54 68.60 2.03 42.59 16
10 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16
11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16
12 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16
13 N -0.69 -24.49 5.02 -446.11 -2.24 -26.73 16
14 C 0.49 17.18 6.47 87.66 0.57 17.74 16
15 O -0.58 -27.18 13.57 -3.03 -0.04 -27.22 16
16 C 0.11 2.45 7.08 85.63 0.61 3.05 16
17 N -0.11 -3.54 3.48 -190.85 -0.66 -4.21 16
18 N -0.06 -2.27 13.23 37.02 0.49 -1.78 16
19 N -0.30 -10.48 12.23 -52.18 -0.64 -11.11 16
20 C 0.20 6.51 7.94 137.38 1.09 7.60 16
21 C -0.04 -1.06 5.88 -20.04 -0.12 -1.17 16
22 C -0.09 -2.09 9.70 22.47 0.22 -1.87 16
23 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16
24 C -0.10 -1.24 10.04 22.31 0.22 -1.02 16
25 C -0.12 -1.83 10.03 22.24 0.22 -1.61 16
26 C -0.09 -2.03 9.70 22.48 0.22 -1.82 16
27 N -0.30 -9.74 11.85 -52.13 -0.62 -10.36 16
28 H 0.04 1.85 5.65 -2.38 -0.01 1.84 16
29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
30 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16
31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
32 H 0.07 3.82 5.95 -2.38 -0.01 3.80 16
33 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16
34 H 0.41 11.10 8.54 -92.71 -0.79 10.31 16
35 H 0.19 2.58 8.14 -2.38 -0.02 2.56 16
36 H 0.19 2.67 8.14 -2.38 -0.02 2.65 16
37 H 0.13 2.85 7.88 -2.91 -0.02 2.82 16
38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16
39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16
40 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16
41 H 0.13 2.88 7.89 -2.91 -0.02 2.85 16
Total: -1.00 -76.23 352.75 3.64 -72.60
By element:
Atomic # 1 Polarization: 20.29 SS G_CDS: 0.28 Total: 20.57 kcal
Atomic # 6 Polarization: -7.93 SS G_CDS: 4.80 Total: -3.13 kcal
Atomic # 7 Polarization: -101.98 SS G_CDS: -3.43 Total: -105.41 kcal
Atomic # 8 Polarization: -27.18 SS G_CDS: -0.04 Total: -27.22 kcal
Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal
Total: -76.23 3.64 -72.60 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183845866.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 166.348 kcal
(2) G-P(sol) polarization free energy of solvation -76.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds