Wall clock time and date at job start Tue Mar 31 2020 10:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38421 * 122.54056 * 2 1 4 4 C 1.33389 * 114.92130 * 180.02562 * 3 2 1 5 5 S 1.75880 * 109.59562 * 359.75923 * 4 3 2 6 6 C 1.33388 * 122.54147 * 180.02562 * 2 1 3 7 7 C 1.50700 * 125.20171 * 359.95334 * 6 2 1 8 8 H 1.09005 * 109.47181 * 345.00396 * 7 6 2 9 9 C 1.53002 * 109.47081 * 105.00071 * 7 6 2 10 10 C 1.50706 * 109.46925 * 185.00085 * 9 7 6 11 11 C 1.38231 * 119.99884 * 269.72543 * 10 9 7 12 12 C 1.38232 * 119.99941 * 179.77036 * 11 10 9 13 13 C 1.38241 * 119.99967 * 0.50748 * 12 11 10 14 14 C 1.38238 * 119.99768 * 359.74620 * 13 12 11 15 15 C 1.38234 * 120.00037 * 0.02562 * 14 13 12 16 16 N 1.46901 * 109.47247 * 225.00417 * 7 6 2 17 17 C 1.46898 * 110.99994 * 85.00031 * 16 7 6 18 18 C 1.52998 * 109.47001 * 179.97438 * 17 16 7 19 19 C 1.50702 * 109.47137 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00062 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99893 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00433 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46703 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47128 * 120.00179 * 23 21 19 26 26 H 1.48501 * 109.47044 * 239.99990 * 23 21 19 27 27 H 1.09000 * 109.46809 * 269.97837 * 1 2 3 28 28 H 1.09004 * 109.46735 * 29.97878 * 1 2 3 29 29 H 1.08994 * 109.46940 * 149.97853 * 1 2 3 30 30 H 1.08006 * 122.54027 * 0.04038 * 3 2 1 31 31 H 1.08003 * 125.20279 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46497 * 65.00348 * 9 7 6 33 33 H 1.09000 * 109.47312 * 305.00127 * 9 7 6 34 34 H 1.07997 * 120.00101 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.00546 * 180.23234 * 12 11 10 36 36 H 1.08001 * 120.00379 * 179.72801 * 13 12 11 37 37 H 1.08003 * 119.99873 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.99984 * 179.97438 * 15 14 13 39 39 H 1.00894 * 110.99598 * 321.04411 * 16 7 6 40 40 H 1.08994 * 109.47295 * 299.99738 * 17 16 7 41 41 H 1.09005 * 109.47118 * 60.00164 * 17 16 7 42 42 H 1.08997 * 109.47535 * 300.00398 * 18 17 16 43 43 H 1.09005 * 109.46832 * 60.00257 * 18 17 16 44 44 H 0.96996 * 120.00189 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9900 -0.0005 5 16 3.9387 -0.7305 0.0059 6 6 2.2246 -1.1245 -0.0005 7 6 1.6538 -2.5192 -0.0001 8 1 0.5976 -2.4795 0.2665 9 6 1.8052 -3.1326 -1.3936 10 6 1.1260 -4.4775 -1.4269 11 6 1.8368 -5.6189 -1.1061 12 6 1.2125 -6.8520 -1.1321 13 6 -0.1198 -6.9448 -1.4890 14 6 -0.8291 -5.8040 -1.8149 15 6 -0.2061 -4.5704 -1.7843 16 7 2.3753 -3.3433 0.9788 17 6 1.8091 -3.1791 2.3243 18 6 2.5845 -4.0513 3.3137 19 6 2.0041 -3.8824 4.6942 20 1 1.1658 -3.2196 4.8502 21 6 2.5433 -4.5741 5.7581 22 7 3.5645 -5.3808 5.5683 23 14 1.8235 -4.3653 7.4692 24 1 0.6893 -3.4081 7.4156 25 1 1.3406 -5.6784 7.9667 26 1 2.8687 -3.8427 8.3855 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.7965 2.1464 0.0006 31 1 4.3078 1.7822 -0.0010 32 1 2.8636 -3.2542 -1.6238 33 1 1.3459 -2.4752 -2.1319 34 1 2.8787 -5.5468 -0.8312 35 1 1.7668 -7.7433 -0.8778 36 1 -0.6063 -7.9087 -1.5135 37 1 -1.8699 -5.8766 -2.0941 38 1 -0.7602 -3.6791 -2.0393 39 1 3.3616 -3.1310 0.9731 40 1 1.8836 -2.1341 2.6248 41 1 0.7618 -3.4814 2.3172 42 1 2.5096 -5.0963 3.0131 43 1 3.6318 -3.7494 3.3209 44 1 3.9440 -5.8671 6.3168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184088390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:06 Heat of formation + Delta-G solvation = 23.934940 kcal Electronic energy + Delta-G solvation = -23509.737649 eV Core-core repulsion = 20323.920175 eV Total energy + Delta-G solvation = -3185.817474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40553 -39.43479 -37.59591 -35.46197 -33.81949 -32.12099 -31.62260 -31.08796 -29.18211 -27.60240 -26.01481 -24.31686 -23.32550 -22.91769 -22.48429 -21.52191 -19.49141 -18.62710 -18.16277 -17.51723 -16.61133 -16.47410 -16.16121 -15.89675 -15.71241 -15.28534 -15.21808 -14.62403 -14.45151 -14.32465 -14.12677 -13.93698 -13.66937 -13.41384 -13.16870 -13.06959 -12.91418 -12.87342 -12.77362 -12.60184 -12.37729 -12.26832 -12.07551 -11.73034 -11.71515 -11.48702 -11.41816 -11.24818 -10.58188 -9.73702 -9.64898 -9.38274 -9.31183 -9.22148 -8.21013 -6.32177 0.07108 0.60398 0.67133 0.72357 1.11372 1.38418 1.38853 1.52080 1.79177 2.39217 3.01193 3.12434 3.30798 3.67198 4.07482 4.08101 4.16096 4.23365 4.29755 4.39575 4.45134 4.49543 4.55856 4.56961 4.64748 4.68348 4.70962 4.77702 4.83522 4.94997 4.99956 5.05073 5.13521 5.14930 5.29882 5.31998 5.42546 5.53342 5.61817 5.67118 5.70194 5.76397 5.77556 5.89974 6.11060 6.24113 6.29159 6.43749 6.84392 7.36838 8.91305 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.005082 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.414157 B = 5508.389383 C = 7954.481941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.108 4.108 3 C -0.137 4.137 4 C -0.212 4.212 5 S 0.068 5.932 6 C -0.219 4.219 7 C 0.168 3.832 8 H 0.091 0.909 9 C -0.056 4.056 10 C -0.074 4.074 11 C -0.106 4.106 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.129 4.129 15 C -0.129 4.129 16 N -0.673 5.673 17 C 0.094 3.906 18 C 0.038 3.962 19 C -0.541 4.541 20 H 0.057 0.943 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.185 0.815 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.332 0.668 40 H 0.011 0.989 41 H 0.055 0.945 42 H -0.006 1.006 43 H -0.013 1.013 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 9.337 -18.202 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.167 4.167 4 C -0.347 4.347 5 S 0.333 5.667 6 C -0.338 4.338 7 C 0.056 3.944 8 H 0.108 0.892 9 C -0.094 4.094 10 C -0.074 4.074 11 C -0.124 4.124 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.147 4.147 16 N -0.303 5.303 17 C -0.035 4.035 18 C 0.000 4.000 19 C -0.580 4.580 20 H 0.075 0.925 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.179 0.821 31 H 0.203 0.797 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.006 0.994 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.152 7.796 -18.243 20.497 hybrid contribution -0.560 1.415 1.500 2.137 sum -5.712 9.211 -16.743 19.945 Atomic orbital electron populations 1.20589 0.88535 1.03801 1.02457 1.19209 0.98570 0.91549 1.02756 1.20336 0.92843 0.99928 1.03624 1.25872 1.00458 0.98322 1.10043 1.84399 1.06364 1.02462 1.73487 1.25393 0.96034 1.00476 1.11878 1.20141 0.97947 0.83417 0.92882 0.89153 1.20568 1.00820 0.93072 0.94907 1.19760 0.94454 0.94670 0.98563 1.21086 1.00240 0.92679 0.98387 1.21357 0.95986 0.97896 1.00440 1.21373 0.94343 0.99575 1.00101 1.21376 1.00641 0.92425 1.00264 1.21274 0.94110 0.98552 1.00718 1.60732 1.06716 1.56683 1.06138 1.21686 0.98130 0.96467 0.87218 1.18855 0.93978 0.94289 0.92869 1.21592 1.16216 1.26035 0.94135 0.92457 1.25939 0.95296 0.94674 1.03632 1.70113 1.25049 1.29122 1.32765 0.85415 0.78576 0.78249 0.78907 1.18651 1.20231 1.20278 0.91739 0.89406 0.91057 0.82054 0.79738 0.91321 0.88975 0.87146 0.85990 0.84744 0.84087 0.84475 0.84935 0.97060 0.92680 0.98739 0.99436 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.59 71.24 0.68 -1.13 16 2 C -0.11 -2.57 5.80 -20.92 -0.12 -2.69 16 3 C -0.14 -2.91 9.98 21.22 0.21 -2.70 16 4 C -0.21 -4.60 11.23 66.72 0.75 -3.85 16 5 S 0.07 1.80 22.18 -56.49 -1.25 0.54 16 6 C -0.22 -5.93 5.16 24.59 0.13 -5.80 16 7 C 0.17 4.80 2.10 44.17 0.09 4.90 16 8 H 0.09 2.64 6.31 -2.38 -0.02 2.62 16 9 C -0.06 -1.38 5.01 29.85 0.15 -1.23 16 10 C -0.07 -2.00 4.95 -19.86 -0.10 -2.10 16 11 C -0.11 -3.17 9.32 22.27 0.21 -2.96 16 12 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 13 C -0.14 -3.35 10.05 22.27 0.22 -3.12 16 14 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 15 C -0.13 -3.03 9.70 22.27 0.22 -2.82 16 16 N -0.67 -24.37 5.64 -495.45 -2.79 -27.16 16 17 C 0.09 4.10 5.42 86.30 0.47 4.57 16 18 C 0.04 2.06 5.23 29.85 0.16 2.22 16 19 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 21 C 0.00 0.15 5.46 84.65 0.46 0.61 16 22 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 23 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.25 8.13 -2.38 -0.02 1.23 16 29 H 0.07 1.29 6.94 -2.39 -0.02 1.27 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.19 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 34 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.33 12.28 7.44 -89.70 -0.67 11.61 16 40 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 41 H 0.05 2.42 8.06 -2.38 -0.02 2.41 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.79 378.09 2.78 -65.01 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.31 Total: 25.87 kcal Atomic # 6 Polarization: -58.14 SS G_CDS: 4.21 Total: -53.93 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.51 Total: -84.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.25 Total: 0.54 kcal Total: -67.79 2.78 -65.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184088390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds