Wall clock time and date at job start Tue Mar 31 2020 10:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38425 * 122.53838 * 2 1 4 4 C 1.33394 * 114.92019 * 180.27013 * 3 2 1 5 5 S 1.75877 * 109.59268 * 359.77126 * 4 3 2 6 6 C 1.33387 * 122.54242 * 179.82916 * 2 1 3 7 7 C 1.50703 * 125.20111 * 0.02562 * 6 2 1 8 8 H 1.08998 * 109.47207 * 14.72396 * 7 6 2 9 9 C 1.53001 * 109.46885 * 254.71934 * 7 6 2 10 10 C 1.50706 * 109.46589 * 174.99869 * 9 7 6 11 11 C 1.38237 * 119.99744 * 90.00605 * 10 9 7 12 12 C 1.38235 * 119.99712 * 180.02562 * 11 10 9 13 13 C 1.38234 * 120.00220 * 359.94731 * 12 11 10 14 14 C 1.38233 * 120.00037 * 0.28719 * 13 12 11 15 15 C 1.38234 * 120.00223 * 270.01815 * 10 9 7 16 16 N 1.46894 * 109.46888 * 134.72167 * 7 6 2 17 17 C 1.46906 * 111.00023 * 274.99664 * 16 7 6 18 18 C 1.53000 * 109.47081 * 180.02562 * 17 16 7 19 19 C 1.50701 * 109.46674 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00399 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99793 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47246 * 119.99939 * 23 21 19 26 26 H 1.48504 * 109.47025 * 239.99963 * 23 21 19 27 27 H 1.08992 * 109.47042 * 270.17026 * 1 2 3 28 28 H 1.08995 * 109.46895 * 30.17370 * 1 2 3 29 29 H 1.09004 * 109.46752 * 150.16927 * 1 2 3 30 30 H 1.07999 * 122.54235 * 0.04037 * 3 2 1 31 31 H 1.07999 * 125.20178 * 179.78789 * 4 3 2 32 32 H 1.08998 * 109.47218 * 55.00615 * 9 7 6 33 33 H 1.08993 * 109.47154 * 295.00048 * 9 7 6 34 34 H 1.08005 * 120.00088 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.99770 * 179.97438 * 12 11 10 36 36 H 1.08002 * 119.99744 * 180.02562 * 13 12 11 37 37 H 1.07998 * 120.00395 * 179.72811 * 14 13 12 38 38 H 1.07998 * 119.99975 * 0.02562 * 15 10 9 39 39 H 1.00897 * 111.00387 * 38.95517 * 16 7 6 40 40 H 1.08994 * 109.47067 * 300.00506 * 17 16 7 41 41 H 1.09001 * 109.46444 * 60.00531 * 17 16 7 42 42 H 1.08994 * 109.47568 * 300.00181 * 18 17 16 43 43 H 1.09001 * 109.47062 * 60.00892 * 18 17 16 44 44 H 0.97001 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0049 6 6 2.2245 -1.1244 0.0034 7 6 1.6537 -2.5192 0.0070 8 1 0.5964 -2.4797 -0.2547 9 6 1.8119 -3.1313 1.4002 10 6 1.1329 -4.4762 1.4380 11 6 1.8406 -5.6173 1.1093 12 6 1.2176 -6.8508 1.1435 13 6 -0.1128 -6.9434 1.5072 14 6 -0.8219 -5.8018 1.8311 15 6 -0.1978 -4.5687 1.8009 16 7 2.3706 -3.3441 -0.9746 17 6 1.7980 -3.1812 -2.3176 18 6 2.5687 -4.0542 -3.3099 19 6 1.9817 -3.8865 -4.6877 20 1 1.1427 -3.2240 -4.8403 21 6 2.5152 -4.5799 -5.7535 22 7 3.5367 -5.3872 -5.5677 23 14 1.7881 -4.3715 -7.4614 24 1 0.6548 -3.4136 -7.4035 25 1 2.8299 -3.8513 -8.3829 26 1 1.3011 -5.6845 -7.9556 27 1 -0.3633 0.0031 1.0276 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 1.7965 2.1464 0.0006 31 1 4.3077 1.7823 -0.0099 32 1 1.3561 -2.4733 2.1401 33 1 2.8714 -3.2527 1.6256 34 1 2.8801 -5.5449 0.8252 35 1 1.7704 -7.7422 0.8863 36 1 -0.5994 -7.9072 1.5342 37 1 -1.8624 -5.8736 2.1111 38 1 -0.7509 -3.6772 2.0571 39 1 3.3570 -3.1318 -0.9738 40 1 0.7509 -3.4834 -2.3052 41 1 1.8712 -2.1363 -2.6193 42 1 3.6160 -3.7524 -3.3224 43 1 2.4952 -5.0990 -3.0080 44 1 3.9123 -5.8747 -6.3174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184088406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:09 Heat of formation + Delta-G solvation = 39.489765 kcal Electronic energy + Delta-G solvation = -23510.183870 eV Core-core repulsion = 20325.040904 eV Total energy + Delta-G solvation = -3185.142966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.35372 -38.44701 -36.27763 -33.60497 -32.20480 -31.05354 -30.61064 -29.70630 -27.68439 -26.61067 -24.12978 -23.26244 -22.30332 -21.80529 -20.75130 -20.33594 -18.46239 -17.24459 -16.53124 -16.26340 -15.46266 -15.06074 -14.91008 -14.56133 -14.24617 -14.10203 -13.98844 -13.52801 -13.19853 -13.15370 -12.94399 -12.49347 -12.41040 -12.22608 -12.05275 -11.94213 -11.75634 -11.59017 -11.18460 -11.09464 -10.93740 -10.77721 -10.72150 -10.50932 -10.45110 -10.03143 -9.38425 -9.12519 -8.69085 -8.62603 -8.34541 -8.32315 -8.22522 -7.89014 -5.97675 -3.99581 1.05212 1.61897 1.69322 1.72095 2.08149 2.73543 3.32278 3.39587 3.43737 4.04478 4.44518 4.65668 4.75505 4.93548 5.08017 5.15724 5.24754 5.31168 5.35368 5.38594 5.41830 5.46957 5.52403 5.59807 5.63508 5.73720 5.77422 5.92273 5.94274 6.04491 6.11594 6.28271 6.33641 6.36960 6.42055 6.50351 6.56321 6.69940 6.79229 6.93740 7.00435 7.28199 7.44709 7.73190 7.81248 7.93911 8.09401 8.46017 9.07514 9.63919 11.13814 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.005083 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.516812 B = 5506.710789 C = 7951.979191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.109 4.109 3 C -0.129 4.129 4 C -0.219 4.219 5 S 0.103 5.897 6 C -0.197 4.197 7 C 0.160 3.840 8 H 0.094 0.906 9 C -0.064 4.064 10 C -0.064 4.064 11 C -0.083 4.083 12 C -0.120 4.120 13 C -0.128 4.128 14 C -0.126 4.126 15 C -0.124 4.124 16 N -0.672 5.672 17 C 0.068 3.932 18 C 0.028 3.972 19 C -0.518 4.518 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.161 0.839 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.334 0.666 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.025 0.975 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 7.605 17.916 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.160 4.160 4 C -0.355 4.355 5 S 0.369 5.631 6 C -0.316 4.316 7 C 0.047 3.953 8 H 0.112 0.888 9 C -0.102 4.102 10 C -0.064 4.064 11 C -0.101 4.101 12 C -0.138 4.138 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.142 4.142 16 N -0.302 5.302 17 C -0.060 4.060 18 C -0.010 4.010 19 C -0.557 4.557 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.065 6.057 17.935 19.177 hybrid contribution -1.206 1.942 -1.457 2.711 sum -4.271 7.999 16.478 18.809 Atomic orbital electron populations 1.20522 0.90004 1.02835 1.01928 1.18820 0.97355 0.91592 1.04403 1.20022 0.92870 0.99096 1.04019 1.25529 0.99706 0.99142 1.11119 1.84266 1.05840 1.00303 1.72738 1.25520 0.95923 1.00619 1.09533 1.20238 0.98807 0.83117 0.93135 0.88775 1.20618 1.00802 0.93193 0.95618 1.19612 0.93769 0.94746 0.98242 1.21020 1.00436 0.91630 0.96976 1.21152 0.95043 0.97870 0.99770 1.21060 0.94772 0.98171 1.00624 1.20996 0.99356 0.92825 1.01276 1.20958 0.94495 0.97351 1.01386 1.60829 1.06645 1.55167 1.07566 1.22171 0.99172 0.98265 0.86350 1.19042 0.94819 0.95252 0.91869 1.21194 1.15849 1.25723 0.92938 0.92822 1.24985 0.95047 0.95250 0.99012 1.69981 1.23838 1.28251 1.31167 0.86563 0.79100 0.77902 0.84601 1.19801 1.21047 1.20984 0.91443 0.91699 0.91317 0.84699 0.82171 0.91057 0.90941 0.85870 0.86407 0.86759 0.86770 0.86787 0.84749 0.92394 0.96519 0.96915 0.95654 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.82 36.01 0.35 -0.66 16 2 C -0.11 -1.41 5.80 -106.25 -0.62 -2.02 16 3 C -0.13 -1.54 9.98 -41.21 -0.41 -1.95 16 4 C -0.22 -2.59 11.23 29.04 0.33 -2.27 16 5 S 0.10 1.37 22.19 -107.50 -2.39 -1.02 16 6 C -0.20 -2.73 5.15 -36.00 -0.19 -2.91 16 7 C 0.16 2.30 2.25 -68.87 -0.15 2.14 16 8 H 0.09 1.41 5.93 -51.93 -0.31 1.10 16 9 C -0.06 -0.81 5.01 -27.88 -0.14 -0.95 16 10 C -0.06 -0.86 4.95 -104.62 -0.52 -1.38 16 11 C -0.08 -1.19 9.31 -39.58 -0.37 -1.56 16 12 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 13 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 14 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 15 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 16 N -0.67 -11.77 5.63 -107.95 -0.61 -12.38 16 17 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 18 C 0.03 0.73 5.23 -27.88 -0.15 0.58 16 19 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 20 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 23 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.33 5.87 7.45 -39.29 -0.29 5.57 16 40 H 0.06 1.25 8.05 -51.93 -0.42 0.84 16 41 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -31.06 377.65 -12.26 -43.32 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.80 Total: 4.97 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -3.87 Total: -31.14 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.13 Total: -38.77 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.39 Total: -1.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.06 -12.26 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184088406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.806 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds