Wall clock time and date at job start Tue Mar 31 2020 10:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38425 * 122.53838 * 2 1 4 4 C 1.33394 * 114.92019 * 180.27013 * 3 2 1 5 5 S 1.75877 * 109.59268 * 359.77126 * 4 3 2 6 6 C 1.33387 * 122.54242 * 179.82916 * 2 1 3 7 7 C 1.50703 * 125.20111 * 0.02562 * 6 2 1 8 8 H 1.08998 * 109.47207 * 14.72396 * 7 6 2 9 9 C 1.53001 * 109.46885 * 254.71934 * 7 6 2 10 10 C 1.50706 * 109.46589 * 174.99869 * 9 7 6 11 11 C 1.38237 * 119.99744 * 90.00605 * 10 9 7 12 12 C 1.38235 * 119.99712 * 180.02562 * 11 10 9 13 13 C 1.38234 * 120.00220 * 359.94731 * 12 11 10 14 14 C 1.38233 * 120.00037 * 0.28719 * 13 12 11 15 15 C 1.38234 * 120.00223 * 270.01815 * 10 9 7 16 16 N 1.46894 * 109.46888 * 134.72167 * 7 6 2 17 17 C 1.46906 * 111.00023 * 274.99664 * 16 7 6 18 18 C 1.53000 * 109.47081 * 180.02562 * 17 16 7 19 19 C 1.50701 * 109.46674 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00399 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99793 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47223 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47246 * 119.99939 * 23 21 19 26 26 H 1.48504 * 109.47025 * 239.99963 * 23 21 19 27 27 H 1.08992 * 109.47042 * 270.17026 * 1 2 3 28 28 H 1.08995 * 109.46895 * 30.17370 * 1 2 3 29 29 H 1.09004 * 109.46752 * 150.16927 * 1 2 3 30 30 H 1.07999 * 122.54235 * 0.04037 * 3 2 1 31 31 H 1.07999 * 125.20178 * 179.78789 * 4 3 2 32 32 H 1.08998 * 109.47218 * 55.00615 * 9 7 6 33 33 H 1.08993 * 109.47154 * 295.00048 * 9 7 6 34 34 H 1.08005 * 120.00088 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.99770 * 179.97438 * 12 11 10 36 36 H 1.08002 * 119.99744 * 180.02562 * 13 12 11 37 37 H 1.07998 * 120.00395 * 179.72811 * 14 13 12 38 38 H 1.07998 * 119.99975 * 0.02562 * 15 10 9 39 39 H 1.00897 * 111.00387 * 38.95517 * 16 7 6 40 40 H 1.08994 * 109.47067 * 300.00506 * 17 16 7 41 41 H 1.09001 * 109.46444 * 60.00531 * 17 16 7 42 42 H 1.08994 * 109.47568 * 300.00181 * 18 17 16 43 43 H 1.09001 * 109.47062 * 60.00892 * 18 17 16 44 44 H 0.97001 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0049 6 6 2.2245 -1.1244 0.0034 7 6 1.6537 -2.5192 0.0070 8 1 0.5964 -2.4797 -0.2547 9 6 1.8119 -3.1313 1.4002 10 6 1.1329 -4.4762 1.4380 11 6 1.8406 -5.6173 1.1093 12 6 1.2176 -6.8508 1.1435 13 6 -0.1128 -6.9434 1.5072 14 6 -0.8219 -5.8018 1.8311 15 6 -0.1978 -4.5687 1.8009 16 7 2.3706 -3.3441 -0.9746 17 6 1.7980 -3.1812 -2.3176 18 6 2.5687 -4.0542 -3.3099 19 6 1.9817 -3.8865 -4.6877 20 1 1.1427 -3.2240 -4.8403 21 6 2.5152 -4.5799 -5.7535 22 7 3.5367 -5.3872 -5.5677 23 14 1.7881 -4.3715 -7.4614 24 1 0.6548 -3.4136 -7.4035 25 1 2.8299 -3.8513 -8.3829 26 1 1.3011 -5.6845 -7.9556 27 1 -0.3633 0.0031 1.0276 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 1.7965 2.1464 0.0006 31 1 4.3077 1.7823 -0.0099 32 1 1.3561 -2.4733 2.1401 33 1 2.8714 -3.2527 1.6256 34 1 2.8801 -5.5449 0.8252 35 1 1.7704 -7.7422 0.8863 36 1 -0.5994 -7.9072 1.5342 37 1 -1.8624 -5.8736 2.1111 38 1 -0.7509 -3.6772 2.0571 39 1 3.3570 -3.1318 -0.9738 40 1 0.7509 -3.4834 -2.3052 41 1 1.8712 -2.1363 -2.6193 42 1 3.6160 -3.7524 -3.3224 43 1 2.4952 -5.0990 -3.0080 44 1 3.9123 -5.8747 -6.3174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184088406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:08 Heat of formation + Delta-G solvation = 24.333357 kcal Electronic energy + Delta-G solvation = -23510.841101 eV Core-core repulsion = 20325.040904 eV Total energy + Delta-G solvation = -3185.800197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40408 -39.43762 -37.59319 -35.46106 -33.81591 -32.12636 -31.62110 -31.08445 -29.18823 -27.59425 -26.01565 -24.32619 -23.32513 -22.91719 -22.48355 -21.52389 -19.48748 -18.62491 -18.16092 -17.51905 -16.61681 -16.47188 -16.15493 -15.89579 -15.71027 -15.26177 -15.24237 -14.66260 -14.43857 -14.32643 -14.13054 -13.94932 -13.64024 -13.42520 -13.16173 -13.05704 -12.92511 -12.86666 -12.76855 -12.64688 -12.37436 -12.22013 -12.07249 -11.73497 -11.71309 -11.47807 -11.41878 -11.24789 -10.58194 -9.73968 -9.64865 -9.37731 -9.31002 -9.22425 -8.21041 -6.32172 0.07475 0.60449 0.67222 0.72476 1.11497 1.38406 1.38880 1.52086 1.79636 2.39245 3.01217 3.12405 3.30835 3.67122 4.07407 4.07864 4.16294 4.23297 4.29842 4.39748 4.44618 4.49541 4.54526 4.56804 4.64971 4.66269 4.72045 4.78028 4.85156 4.94984 4.99600 5.05067 5.14964 5.15403 5.30076 5.32115 5.42423 5.53495 5.62029 5.67141 5.70274 5.76442 5.77590 5.90109 6.11130 6.24187 6.29232 6.43845 6.84394 7.36793 8.91282 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.005083 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.516812 B = 5506.710789 C = 7951.979191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.108 4.108 3 C -0.137 4.137 4 C -0.212 4.212 5 S 0.068 5.932 6 C -0.219 4.219 7 C 0.167 3.833 8 H 0.091 0.909 9 C -0.055 4.055 10 C -0.075 4.075 11 C -0.106 4.106 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.129 4.129 15 C -0.128 4.128 16 N -0.674 5.674 17 C 0.094 3.906 18 C 0.038 3.962 19 C -0.541 4.541 20 H 0.057 0.943 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.162 0.838 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.332 0.668 40 H 0.055 0.945 41 H 0.011 0.989 42 H -0.013 1.013 43 H -0.006 1.006 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 9.383 18.237 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.167 4.167 4 C -0.347 4.347 5 S 0.333 5.667 6 C -0.338 4.338 7 C 0.056 3.944 8 H 0.109 0.891 9 C -0.093 4.093 10 C -0.075 4.075 11 C -0.124 4.124 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.146 4.146 16 N -0.303 5.303 17 C -0.035 4.035 18 C 0.000 4.000 19 C -0.580 4.580 20 H 0.075 0.925 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.179 0.821 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.073 0.927 41 H 0.029 0.971 42 H 0.006 0.994 43 H 0.013 0.987 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.077 7.843 18.280 20.529 hybrid contribution -0.568 1.408 -1.498 2.133 sum -5.645 9.251 16.782 19.977 Atomic orbital electron populations 1.20592 0.88529 1.02926 1.03262 1.19207 0.98577 0.91553 1.02749 1.20333 0.92830 0.99914 1.03643 1.25872 1.00461 0.98325 1.10031 1.84396 1.06367 1.02450 1.73532 1.25380 0.96032 1.00474 1.11906 1.20164 0.98004 0.83417 0.92858 0.89091 1.20554 1.00778 0.93066 0.94883 1.19764 0.94489 0.94677 0.98543 1.21089 1.00269 0.92678 0.98336 1.21356 0.96017 0.97888 1.00439 1.21369 0.94344 0.99568 1.00099 1.21376 1.00626 0.92427 1.00296 1.21275 0.94099 0.98552 1.00696 1.60731 1.06708 1.56706 1.06181 1.21686 0.98083 0.96469 0.87265 1.18854 0.93995 0.94282 0.92855 1.21592 1.16176 1.26000 0.94217 0.92460 1.25942 0.95322 0.94671 1.03617 1.70114 1.25160 1.29055 1.32716 0.85412 0.78578 0.78248 0.78895 1.18653 1.20266 1.20240 0.89419 0.90382 0.92408 0.82064 0.79741 0.88973 0.91344 0.87151 0.85995 0.84746 0.84091 0.84474 0.84935 0.92699 0.97065 0.99432 0.98741 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.82 71.24 0.70 -1.10 16 2 C -0.11 -2.57 5.80 -20.92 -0.12 -2.69 16 3 C -0.14 -2.90 9.98 21.22 0.21 -2.69 16 4 C -0.21 -4.60 11.23 66.72 0.75 -3.85 16 5 S 0.07 1.79 22.19 -56.49 -1.25 0.53 16 6 C -0.22 -5.93 5.15 24.59 0.13 -5.80 16 7 C 0.17 4.79 2.25 44.17 0.10 4.89 16 8 H 0.09 2.66 5.93 -2.39 -0.01 2.65 16 9 C -0.05 -1.36 5.01 29.85 0.15 -1.21 16 10 C -0.07 -2.01 4.95 -19.86 -0.10 -2.11 16 11 C -0.11 -3.17 9.31 22.27 0.21 -2.96 16 12 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 13 C -0.14 -3.35 10.05 22.27 0.22 -3.12 16 14 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 15 C -0.13 -3.03 9.70 22.27 0.22 -2.82 16 16 N -0.67 -24.41 5.63 -495.45 -2.79 -27.20 16 17 C 0.09 4.11 5.42 86.30 0.47 4.57 16 18 C 0.04 2.07 5.23 29.85 0.16 2.22 16 19 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 21 C 0.00 0.15 5.46 84.66 0.46 0.61 16 22 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 23 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.06 1.24 6.50 -2.38 -0.02 1.22 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.19 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 33 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.33 12.29 7.45 -89.70 -0.67 11.62 16 40 H 0.05 2.42 8.05 -2.39 -0.02 2.40 16 41 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.84 377.65 2.81 -65.03 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.31 Total: 25.89 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 4.23 Total: -53.93 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.50 Total: -84.65 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.25 Total: 0.53 kcal Total: -67.84 2.81 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184088406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.359 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds