Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32134 * 119.90461 * 2 1 4 4 C 1.32078 * 120.07898 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.06661 * 180.02562 * 4 3 2 6 6 C 1.39463 * 119.86723 * 0.02562 * 4 3 2 7 7 C 1.48107 * 120.09692 * 180.02562 * 6 4 3 8 8 O 1.21536 * 120.00210 * 354.21094 * 7 6 4 9 9 N 1.34777 * 120.00170 * 174.21521 * 7 6 4 10 10 C 1.40065 * 120.00293 * 179.97438 * 9 7 6 11 11 C 1.40426 * 125.97387 * 359.97438 * 10 9 7 12 12 C 1.35236 * 107.86453 * 179.77144 * 11 10 9 13 13 N 1.34970 * 107.86277 * 0.41843 * 12 11 10 14 14 C 1.46505 * 125.97165 * 179.84366 * 13 12 11 15 15 C 1.50698 * 109.47406 * 124.71259 * 14 13 12 16 16 H 1.08003 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99856 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99893 * 359.72745 * 17 15 14 19 19 Si 1.86798 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47192 * 179.72549 * 19 17 15 21 21 H 1.48498 * 109.47084 * 299.72905 * 19 17 15 22 22 H 1.48503 * 109.47120 * 59.72781 * 19 17 15 23 23 N 1.31235 * 125.97302 * 180.02562 * 10 9 7 24 24 N 1.33011 * 119.80022 * 0.27500 * 6 4 3 25 25 C 1.31797 * 119.92697 * 359.44309 * 24 6 4 26 26 C 1.50698 * 119.93691 * 180.27633 * 25 24 6 27 27 H 1.08999 * 109.46941 * 90.00463 * 1 2 3 28 28 H 1.09001 * 109.47088 * 210.00050 * 1 2 3 29 29 H 1.08999 * 109.46932 * 330.00182 * 1 2 3 30 30 H 1.08998 * 109.46984 * 263.27024 * 5 4 3 31 31 H 1.08998 * 109.47072 * 23.26728 * 5 4 3 32 32 H 1.08999 * 109.46823 * 143.26725 * 5 4 3 33 33 H 0.97006 * 119.99618 * 0.02562 * 9 7 6 34 34 H 1.08001 * 126.06932 * 0.05196 * 11 10 9 35 35 H 1.07998 * 126.06412 * 180.26403 * 12 11 10 36 36 H 1.09010 * 109.47010 * 4.71413 * 14 13 12 37 37 H 1.08998 * 109.46912 * 244.71757 * 14 13 12 38 38 H 0.96994 * 120.00264 * 0.27675 * 18 17 15 39 39 H 1.09001 * 109.47316 * 270.27970 * 26 25 24 40 40 H 1.08997 * 109.47309 * 30.28211 * 26 25 24 41 41 H 1.09007 * 109.47381 * 150.28527 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2376 2.4560 0.0001 6 6 4.1847 -0.0579 -0.0016 7 6 5.6658 -0.0593 -0.0016 8 8 6.2745 0.9874 -0.1068 9 7 6.3386 -1.2213 0.1150 10 6 7.7392 -1.2227 0.1145 11 6 8.5652 -0.0929 -0.0001 12 6 9.8502 -0.5119 0.0467 13 7 9.8431 -1.8553 0.1763 14 6 11.0242 -2.7179 0.2622 15 6 10.9479 -3.5509 1.5156 16 1 10.1038 -3.4485 2.1815 17 6 11.9552 -4.4446 1.8118 18 7 12.9799 -4.5739 0.9977 19 14 11.8603 -5.4777 3.3652 20 1 13.0539 -6.3571 3.4486 21 1 11.8190 -4.5853 4.5514 22 1 10.6323 -6.3121 3.3305 23 7 8.5091 -2.2803 0.2200 24 7 3.5165 -1.2079 -0.0076 25 6 2.1986 -1.2026 -0.0015 26 6 1.4413 -2.5055 -0.0020 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.5227 2.7116 -1.0204 31 1 3.6003 3.2412 0.4068 32 1 5.1329 2.3600 0.6143 33 1 5.8527 -2.0567 0.1986 34 1 8.2333 0.9297 -0.1026 35 1 10.7264 0.1167 -0.0118 36 1 11.9230 -2.1016 0.2897 37 1 11.0596 -3.3732 -0.6081 38 1 13.0291 -4.0377 0.1909 39 1 1.2582 -2.8190 -1.0298 40 1 2.0283 -3.2672 0.5110 41 1 0.4894 -2.3728 0.5122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185095377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = 91.824617 kcal Electronic energy + Delta-G solvation = -25002.484139 eV Core-core repulsion = 21305.610120 eV Total energy + Delta-G solvation = -3696.874020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85656 -40.70077 -39.23004 -35.62211 -34.79637 -34.66636 -33.65573 -31.00731 -30.47382 -29.44132 -29.29292 -26.94414 -26.02690 -24.07914 -23.31886 -22.52208 -21.57824 -20.49604 -19.81578 -18.48680 -17.53508 -17.20647 -16.41511 -16.23284 -15.55715 -15.38670 -15.06387 -14.75051 -14.13022 -13.90796 -13.79956 -13.72258 -13.49550 -13.31514 -13.24266 -13.00934 -12.58157 -12.49457 -12.46384 -12.27930 -12.22754 -11.89695 -11.78496 -11.20038 -11.13288 -10.81575 -10.52686 -10.16511 -10.15241 -9.87820 -9.36307 -9.25909 -9.00874 -8.59010 -8.24420 -7.56782 -6.59080 -4.33147 0.03565 0.67120 2.23393 2.55032 2.78119 3.27089 3.37397 3.39221 3.40043 3.58312 3.58492 3.69579 3.77568 3.98769 4.26971 4.40478 4.51947 4.67012 4.83297 4.95466 5.05288 5.14670 5.18274 5.29123 5.38246 5.43515 5.50566 5.53572 5.64872 5.69061 5.86738 6.06260 6.21729 6.35225 6.45632 6.54956 6.72953 6.83012 7.24587 7.30886 7.45153 7.67705 7.80047 8.05664 8.32932 8.50470 8.60389 9.34947 10.78586 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.002722 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.310835 B =10283.395367 C =11312.248117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.109 3.891 3 N -0.443 5.443 4 C 0.144 3.856 5 C -0.108 4.108 6 C 0.027 3.973 7 C 0.583 3.417 8 O -0.501 6.501 9 N -0.609 5.609 10 C 0.256 3.744 11 C -0.284 4.284 12 C 0.051 3.949 13 N -0.316 5.316 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.296 5.296 24 N -0.406 5.406 25 C 0.070 3.930 26 C -0.104 4.104 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.420 0.580 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.108 9.960 -2.973 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.033 4.033 3 N -0.158 5.158 4 C 0.004 3.996 5 C -0.165 4.165 6 C -0.114 4.114 7 C 0.367 3.633 8 O -0.375 6.375 9 N -0.255 5.255 10 C 0.003 3.997 11 C -0.315 4.315 12 C -0.098 4.098 13 N -0.097 5.097 14 C 0.131 3.869 15 C -0.647 4.647 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.127 5.127 24 N -0.123 5.123 25 C -0.074 4.074 26 C -0.161 4.161 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.257 0.743 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.658 8.216 -2.060 24.189 hybrid contribution -1.021 1.506 -1.000 2.076 sum -23.679 9.721 -3.060 25.779 Atomic orbital electron populations 1.20858 0.87275 1.04415 1.03905 1.22454 0.98660 0.88889 0.93329 1.68340 1.07706 1.28766 1.10997 1.22344 0.89714 0.96537 0.91016 1.21095 1.00123 0.90459 1.04806 1.21724 0.94864 0.90439 1.04411 1.17433 0.84938 0.83484 0.77396 1.90692 1.67708 1.30710 1.48369 1.42186 1.03008 1.10452 1.69899 1.19063 0.83417 0.93585 1.03628 1.21534 0.90406 0.99954 1.19595 1.22575 0.99132 0.85851 1.02273 1.48835 1.04562 1.05057 1.51263 1.19783 0.78252 0.89502 0.99384 1.22102 1.10307 1.25042 1.07210 0.91828 1.25925 0.92011 0.96694 1.03527 1.70849 1.30268 1.40253 1.12598 0.83420 0.76238 0.75988 0.74003 1.20510 1.21230 1.21113 1.77394 0.88030 1.20047 1.27266 1.68151 1.08807 1.28540 1.06816 1.22123 0.89873 0.97062 0.98319 1.20799 0.99330 0.92161 1.03827 0.89405 0.89470 0.89808 0.89266 0.90854 0.87239 0.74264 0.81975 0.81357 0.93538 0.94702 0.92274 0.89686 0.89723 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.78 36.01 0.35 -0.19 16 2 C 0.11 1.02 6.79 -82.28 -0.56 0.46 16 3 N -0.44 -5.05 10.34 -5.23 -0.05 -5.10 16 4 C 0.14 1.77 6.82 -82.03 -0.56 1.21 16 5 C -0.11 -1.15 8.88 36.01 0.32 -0.83 16 6 C 0.03 0.36 6.75 -82.85 -0.56 -0.20 16 7 C 0.58 9.07 7.72 -12.21 -0.09 8.98 16 8 O -0.50 -8.19 10.46 5.33 0.06 -8.13 16 9 N -0.61 -10.33 5.43 -11.92 -0.06 -10.40 16 10 C 0.26 5.25 8.10 -154.46 -1.25 4.00 16 11 C -0.28 -5.53 9.60 -39.83 -0.38 -5.92 16 12 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 13 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 14 C 0.25 6.30 5.57 -5.19 -0.03 6.28 16 15 C -0.61 -17.17 9.24 -34.44 -0.32 -17.49 16 16 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 17 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 18 N -0.90 -26.35 13.65 55.43 0.76 -25.59 16 19 Si 1.08 25.00 29.90 -169.99 -5.08 19.92 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.30 -6.98 12.42 31.43 0.39 -6.59 16 24 N -0.41 -5.06 9.65 -5.89 -0.06 -5.12 16 25 C 0.07 0.68 6.79 -82.43 -0.56 0.13 16 26 C -0.10 -0.62 9.78 36.00 0.35 -0.27 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.25 5.94 -51.93 -0.31 -0.06 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.30 5.85 -51.93 -0.30 1.00 16 33 H 0.42 6.55 8.19 -40.82 -0.33 6.22 16 34 H 0.16 2.95 5.91 -52.49 -0.31 2.64 16 35 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.05 1.13 7.94 -51.92 -0.41 0.72 16 37 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 38 H 0.27 7.60 7.22 -40.82 -0.29 7.30 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.29 5.94 -51.93 -0.31 -0.02 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -33.59 349.29 -7.46 -41.05 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.85 Total: 4.80 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.58 Total: -2.47 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.74 Total: -60.43 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.06 Total: -8.13 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.59 -7.46 -41.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185095377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.873 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds