Wall clock time and date at job start Tue Mar 31 2020 10:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32134 * 119.90461 * 2 1 4 4 C 1.32078 * 120.07898 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.06661 * 180.02562 * 4 3 2 6 6 C 1.39463 * 119.86723 * 0.02562 * 4 3 2 7 7 C 1.48107 * 120.09692 * 180.02562 * 6 4 3 8 8 O 1.21536 * 120.00210 * 354.21094 * 7 6 4 9 9 N 1.34777 * 120.00170 * 174.21521 * 7 6 4 10 10 C 1.40065 * 120.00293 * 179.97438 * 9 7 6 11 11 C 1.40426 * 125.97387 * 359.97438 * 10 9 7 12 12 C 1.35236 * 107.86453 * 179.77144 * 11 10 9 13 13 N 1.34970 * 107.86277 * 0.41843 * 12 11 10 14 14 C 1.46505 * 125.97165 * 179.84366 * 13 12 11 15 15 C 1.50698 * 109.47406 * 124.71259 * 14 13 12 16 16 H 1.08003 * 119.99821 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99856 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99893 * 359.72745 * 17 15 14 19 19 Si 1.86798 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47192 * 179.72549 * 19 17 15 21 21 H 1.48498 * 109.47084 * 299.72905 * 19 17 15 22 22 H 1.48503 * 109.47120 * 59.72781 * 19 17 15 23 23 N 1.31235 * 125.97302 * 180.02562 * 10 9 7 24 24 N 1.33011 * 119.80022 * 0.27500 * 6 4 3 25 25 C 1.31797 * 119.92697 * 359.44309 * 24 6 4 26 26 C 1.50698 * 119.93691 * 180.27633 * 25 24 6 27 27 H 1.08999 * 109.46941 * 90.00463 * 1 2 3 28 28 H 1.09001 * 109.47088 * 210.00050 * 1 2 3 29 29 H 1.08999 * 109.46932 * 330.00182 * 1 2 3 30 30 H 1.08998 * 109.46984 * 263.27024 * 5 4 3 31 31 H 1.08998 * 109.47072 * 23.26728 * 5 4 3 32 32 H 1.08999 * 109.46823 * 143.26725 * 5 4 3 33 33 H 0.97006 * 119.99618 * 0.02562 * 9 7 6 34 34 H 1.08001 * 126.06932 * 0.05196 * 11 10 9 35 35 H 1.07998 * 126.06412 * 180.26403 * 12 11 10 36 36 H 1.09010 * 109.47010 * 4.71413 * 14 13 12 37 37 H 1.08998 * 109.46912 * 244.71757 * 14 13 12 38 38 H 0.96994 * 120.00264 * 0.27675 * 18 17 15 39 39 H 1.09001 * 109.47316 * 270.27970 * 26 25 24 40 40 H 1.08997 * 109.47309 * 30.28211 * 26 25 24 41 41 H 1.09007 * 109.47381 * 150.28527 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2376 2.4560 0.0001 6 6 4.1847 -0.0579 -0.0016 7 6 5.6658 -0.0593 -0.0016 8 8 6.2745 0.9874 -0.1068 9 7 6.3386 -1.2213 0.1150 10 6 7.7392 -1.2227 0.1145 11 6 8.5652 -0.0929 -0.0001 12 6 9.8502 -0.5119 0.0467 13 7 9.8431 -1.8553 0.1763 14 6 11.0242 -2.7179 0.2622 15 6 10.9479 -3.5509 1.5156 16 1 10.1038 -3.4485 2.1815 17 6 11.9552 -4.4446 1.8118 18 7 12.9799 -4.5739 0.9977 19 14 11.8603 -5.4777 3.3652 20 1 13.0539 -6.3571 3.4486 21 1 11.8190 -4.5853 4.5514 22 1 10.6323 -6.3121 3.3305 23 7 8.5091 -2.2803 0.2200 24 7 3.5165 -1.2079 -0.0076 25 6 2.1986 -1.2026 -0.0015 26 6 1.4413 -2.5055 -0.0020 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.5227 2.7116 -1.0204 31 1 3.6003 3.2412 0.4068 32 1 5.1329 2.3600 0.6143 33 1 5.8527 -2.0567 0.1986 34 1 8.2333 0.9297 -0.1026 35 1 10.7264 0.1167 -0.0118 36 1 11.9230 -2.1016 0.2897 37 1 11.0596 -3.3732 -0.6081 38 1 13.0291 -4.0377 0.1909 39 1 1.2582 -2.8190 -1.0298 40 1 2.0283 -3.2672 0.5110 41 1 0.4894 -2.3728 0.5122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185095377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:30 Heat of formation + Delta-G solvation = 69.230361 kcal Electronic energy + Delta-G solvation = -25003.463900 eV Core-core repulsion = 21305.610120 eV Total energy + Delta-G solvation = -3697.853780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79863 -42.20139 -40.51755 -36.76467 -36.12008 -35.51121 -35.40584 -32.75735 -31.27628 -31.02533 -30.01247 -28.36862 -27.33506 -25.29364 -24.65787 -23.76466 -22.77118 -21.97536 -21.21997 -19.45483 -19.27271 -18.74408 -17.91317 -17.23643 -16.88575 -16.38588 -16.23361 -16.02953 -15.75840 -15.56003 -15.06347 -14.64582 -14.47625 -14.19389 -14.01394 -13.95793 -13.89273 -13.76753 -13.67229 -13.35012 -13.21364 -13.17175 -12.87551 -12.62307 -12.50303 -12.13927 -11.96345 -11.89587 -11.68535 -11.14525 -11.03140 -10.70744 -10.28272 -10.07751 -9.87381 -9.25655 -8.79426 -6.57236 -0.86015 -0.16162 0.85857 1.13546 1.35007 1.50170 1.56457 1.78175 2.03961 2.08698 2.47416 2.49906 2.68582 2.84691 2.99835 3.15192 3.40952 3.72241 3.81271 3.92909 4.10154 4.12752 4.51954 4.53620 4.62903 4.66005 4.70465 4.73417 4.75334 4.77249 4.78624 4.84917 4.93646 5.02464 5.07493 5.27379 5.45216 5.53150 5.74100 5.89136 5.95077 6.07162 6.24669 6.39790 6.51187 6.76026 6.90518 7.18104 8.57165 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.002722 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.310835 B =10283.395367 C =11312.248117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.118 3.882 3 N -0.456 5.456 4 C 0.137 3.863 5 C -0.102 4.102 6 C 0.000 4.000 7 C 0.586 3.414 8 O -0.512 6.512 9 N -0.611 5.611 10 C 0.264 3.736 11 C -0.286 4.286 12 C 0.058 3.942 13 N -0.341 5.341 14 C 0.259 3.741 15 C -0.623 4.623 16 H 0.044 0.956 17 C -0.018 4.018 18 N -0.922 5.922 19 Si 1.119 2.881 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.276 1.276 23 N -0.344 5.344 24 N -0.426 5.426 25 C 0.067 3.933 26 C -0.103 4.103 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.424 0.576 34 H 0.177 0.823 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.804 10.393 -2.512 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.025 4.025 3 N -0.172 5.172 4 C -0.002 4.002 5 C -0.160 4.160 6 C -0.139 4.139 7 C 0.372 3.628 8 O -0.386 6.386 9 N -0.258 5.258 10 C 0.010 3.990 11 C -0.317 4.317 12 C -0.090 4.090 13 N -0.123 5.123 14 C 0.140 3.860 15 C -0.661 4.661 16 H 0.062 0.938 17 C -0.218 4.218 18 N -0.558 5.558 19 Si 0.940 3.060 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.202 1.202 23 N -0.175 5.175 24 N -0.143 5.143 25 C -0.079 4.079 26 C -0.160 4.160 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.262 0.738 34 H 0.195 0.805 35 H 0.223 0.777 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.356 8.700 -1.617 26.856 hybrid contribution -0.444 1.444 -1.204 1.932 sum -25.800 10.144 -2.821 27.866 Atomic orbital electron populations 1.21077 0.83805 1.05986 1.05457 1.23256 1.00752 0.88085 0.90446 1.68449 1.07055 1.29840 1.11871 1.22481 0.90364 0.96445 0.90867 1.21032 0.99720 0.90494 1.04709 1.21358 0.93409 0.91491 1.07625 1.17825 0.86009 0.82712 0.76281 1.90663 1.68432 1.30866 1.48620 1.42311 1.01632 1.11390 1.70513 1.19399 0.84848 0.93281 1.01507 1.21779 0.90212 1.00291 1.19416 1.23244 1.00715 0.84753 1.00297 1.48623 1.04089 1.06025 1.53582 1.19451 0.79593 0.89550 0.97429 1.22284 1.09740 1.25997 1.08049 0.93777 1.27267 0.91378 0.97452 1.05703 1.70943 1.31042 1.40842 1.12977 0.82889 0.76696 0.75121 0.71303 1.19860 1.19621 1.20169 1.77304 0.88536 1.21822 1.29872 1.68118 1.10387 1.28309 1.07517 1.22846 0.89089 0.99016 0.96902 1.20981 1.00032 0.89857 1.05111 0.87520 0.86644 0.89498 0.89027 0.89322 0.88656 0.73785 0.80548 0.77686 0.92511 0.96534 0.92932 0.88215 0.90436 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.78 71.24 0.70 0.06 16 2 C 0.12 1.90 6.79 42.63 0.29 2.19 16 3 N -0.46 -9.69 10.34 -170.46 -1.76 -11.45 16 4 C 0.14 3.31 6.82 42.82 0.29 3.60 16 5 C -0.10 -2.16 8.88 71.24 0.63 -1.53 16 6 C 0.00 0.00 6.75 41.88 0.28 0.29 16 7 C 0.59 18.50 7.72 86.86 0.67 19.17 16 8 O -0.51 -16.85 10.46 -3.83 -0.04 -16.89 16 9 N -0.61 -21.22 5.43 -309.91 -1.68 -22.90 16 10 C 0.26 11.02 8.10 133.36 1.08 12.10 16 11 C -0.29 -11.12 9.60 22.11 0.21 -10.91 16 12 C 0.06 2.28 11.43 83.52 0.96 3.23 16 13 N -0.34 -16.30 3.67 -351.83 -1.29 -17.59 16 14 C 0.26 13.45 5.57 85.63 0.48 13.93 16 15 C -0.62 -35.87 9.24 25.60 0.24 -35.63 16 16 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 17 C -0.02 -1.03 5.46 84.66 0.46 -0.57 16 18 N -0.92 -54.19 13.65 21.45 0.29 -53.89 16 19 Si 1.12 50.18 29.90 68.60 2.05 52.24 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 N -0.34 -16.70 12.42 -54.49 -0.68 -17.38 16 24 N -0.43 -10.41 9.65 -172.55 -1.67 -12.08 16 25 C 0.07 1.18 6.79 42.68 0.29 1.47 16 26 C -0.10 -0.91 9.78 71.24 0.70 -0.21 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.12 0.07 5.94 -2.39 -0.01 0.05 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.10 2.29 5.85 -2.39 -0.01 2.28 16 33 H 0.42 13.70 8.19 -92.70 -0.76 12.94 16 34 H 0.18 6.31 5.91 -2.91 -0.02 6.29 16 35 H 0.21 6.20 8.06 -2.91 -0.02 6.17 16 36 H 0.06 2.80 7.94 -2.38 -0.02 2.78 16 37 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 38 H 0.26 15.15 7.22 -92.71 -0.67 14.48 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.12 0.25 5.94 -2.38 -0.01 0.24 16 Total: -1.00 -74.33 349.29 2.93 -71.40 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.43 Total: 21.36 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 7.27 Total: 7.19 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -6.79 Total: -135.29 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.04 Total: -16.89 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Total: -74.33 2.93 -71.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185095377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.633 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds