Wall clock time and date at job start Tue Mar 31 2020 10:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 N 1.46501 * 109.47078 * 79.98054 * 8 7 2 10 10 C 1.34781 * 119.99687 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00069 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99540 * 179.97438 * 10 9 8 13 13 C 1.40199 * 119.99644 * 180.02562 * 12 10 9 14 14 C 1.40404 * 125.97062 * 359.71395 * 13 12 10 15 15 C 1.35247 * 107.86324 * 179.83275 * 14 13 12 16 16 N 1.34962 * 107.86058 * 0.42960 * 15 14 13 17 17 C 1.46499 * 125.97901 * 179.70948 * 16 15 14 18 18 C 1.50707 * 109.47169 * 124.99870 * 17 16 15 19 19 H 1.08004 * 119.99831 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47072 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47007 * 119.99657 * 22 20 18 25 25 H 1.48498 * 109.46841 * 239.99523 * 22 20 18 26 26 N 1.31202 * 125.97111 * 180.02562 * 13 12 10 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46996 * 199.97619 * 8 7 2 34 34 H 1.09002 * 109.47259 * 319.97706 * 8 7 2 35 35 H 0.96995 * 120.00183 * 359.97438 * 9 8 7 36 36 H 0.96995 * 120.00330 * 359.97438 * 12 10 9 37 37 H 1.07999 * 126.06971 * 0.02562 * 14 13 12 38 38 H 1.08001 * 126.06762 * 180.15663 * 15 14 13 39 39 H 1.09000 * 109.47310 * 244.99872 * 17 16 15 40 40 H 1.08997 * 109.46986 * 5.00142 * 17 16 15 41 41 H 0.97000 * 119.99897 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 7 1.0381 -2.8284 -1.3603 10 6 0.3620 -3.9688 -1.6031 11 8 0.1217 -4.7387 -0.6931 12 7 -0.0477 -4.2559 -2.8546 13 6 -0.7515 -5.4419 -3.1071 14 6 -1.0909 -6.4177 -2.1564 15 6 -1.7670 -7.4005 -2.7938 16 7 -1.8463 -7.0686 -4.0996 17 6 -2.4918 -7.8589 -5.1508 18 6 -3.5160 -7.0105 -5.8597 19 1 -3.6709 -5.9854 -5.5571 20 6 -4.2560 -7.5434 -6.8938 21 7 -4.0678 -8.7919 -7.2619 22 14 -5.5250 -6.4917 -7.7730 23 1 -5.5431 -5.1332 -7.1734 24 1 -5.1746 -6.3933 -9.2126 25 1 -6.8664 -7.1128 -7.6313 26 7 -1.2029 -5.8366 -4.2741 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1542 -3.2997 0.3517 34 1 0.6178 -2.4555 0.6604 35 1 1.2294 -2.2141 -2.0862 36 1 0.1436 -3.6416 -3.5805 37 1 -0.8568 -6.3873 -1.1025 38 1 -2.1680 -8.2944 -2.3394 39 1 -1.7408 -8.1950 -5.8657 40 1 -2.9824 -8.7242 -4.7053 41 1 -4.5887 -9.1670 -7.9891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188975276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:28 Heat of formation + Delta-G solvation = 89.703853 kcal Electronic energy + Delta-G solvation = -24457.672804 eV Core-core repulsion = 20760.706821 eV Total energy + Delta-G solvation = -3696.965983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99798 -40.59919 -39.51269 -35.98913 -34.68768 -33.61379 -33.27525 -32.40722 -30.84683 -29.30823 -28.10241 -27.08089 -26.31918 -23.34292 -23.01926 -22.11128 -21.55143 -20.44148 -19.88836 -18.22622 -17.21626 -17.06661 -16.58932 -16.42568 -15.78637 -15.58042 -15.47021 -14.94434 -14.53890 -14.32688 -14.23815 -13.98378 -13.81136 -13.34265 -13.14614 -12.90003 -12.79981 -12.55104 -12.33508 -12.22984 -11.91363 -11.75897 -11.06440 -10.89399 -10.45113 -10.31665 -10.25207 -10.01145 -9.88198 -9.69625 -9.50239 -9.35765 -9.33847 -8.64224 -8.11666 -7.43104 -6.24854 -4.29753 0.64210 0.68395 2.38374 2.63641 3.07890 3.21633 3.29187 3.32339 3.35971 3.64727 3.81200 4.00377 4.08522 4.25644 4.29466 4.35937 4.46151 4.54346 4.99540 5.06042 5.10345 5.14949 5.21225 5.27825 5.40116 5.50595 5.54223 5.71123 5.79052 5.90088 6.08610 6.23655 6.26179 6.51822 6.54192 6.85194 6.98472 7.08890 7.47216 7.53646 7.69023 7.80030 7.94314 8.05884 8.51971 8.65250 8.80579 9.35893 10.83879 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002243 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.575055 B =12480.548696 C =13157.613860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.096 3.904 4 N -0.478 5.478 5 C 0.089 3.911 6 C -0.147 4.147 7 C -0.067 4.067 8 C 0.182 3.818 9 N -0.741 5.741 10 C 0.715 3.285 11 O -0.565 6.565 12 N -0.642 5.642 13 C 0.275 3.725 14 C -0.286 4.286 15 C 0.051 3.949 16 N -0.320 5.320 17 C 0.258 3.742 18 C -0.527 4.527 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.307 5.307 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.407 0.593 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.252 16.039 15.145 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.118 4.118 3 C -0.062 4.062 4 N -0.186 5.186 5 C -0.068 4.068 6 C -0.168 4.168 7 C -0.075 4.075 8 C 0.058 3.942 9 N -0.399 5.399 10 C 0.414 3.586 11 O -0.441 6.441 12 N -0.292 5.292 13 C 0.021 3.979 14 C -0.318 4.318 15 C -0.099 4.099 16 N -0.102 5.102 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.087 0.913 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.138 5.138 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.241 0.759 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.263 16.174 14.539 25.473 hybrid contribution -0.830 0.050 -0.478 0.959 sum 12.433 16.224 14.061 24.809 Atomic orbital electron populations 1.20854 0.89793 1.03879 1.03184 1.20921 0.97852 0.93474 0.99576 1.22728 0.89874 0.97500 0.96058 1.67682 1.08388 1.31570 1.10980 1.22775 1.00515 0.87523 0.95965 1.22158 0.94332 1.00063 1.00207 1.20227 0.93861 0.94717 0.98713 1.19985 0.98705 0.92115 0.83400 1.44990 1.61564 1.22699 1.10598 1.15571 0.78737 0.81762 0.82550 1.90881 1.60824 1.48926 1.43419 1.41353 1.57645 1.21252 1.08959 1.18771 0.97880 0.88008 0.93258 1.21505 1.12700 0.96036 1.01536 1.22560 1.01091 1.00743 0.85487 1.49060 1.39923 1.13842 1.07374 1.19745 0.92570 0.89591 0.84043 1.21298 1.19367 0.98948 1.16918 0.91266 1.24953 0.97405 0.95256 0.96553 1.69929 1.41139 1.13253 1.29046 0.86276 0.80566 0.80388 0.79290 1.19580 1.20707 1.20769 1.77326 1.18134 0.99539 1.18817 0.90414 0.90830 0.90517 0.82627 0.82558 0.84326 0.90095 0.89874 0.76810 0.75852 0.82187 0.81513 0.93740 0.92518 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.35 36.00 0.34 -0.37 16 2 C -0.12 -0.81 5.90 -104.49 -0.62 -1.42 16 3 C 0.10 0.71 10.86 -17.55 -0.19 0.52 16 4 N -0.48 -4.23 10.36 -13.26 -0.14 -4.36 16 5 C 0.09 0.63 11.18 -17.55 -0.20 0.44 16 6 C -0.15 -0.97 9.78 -39.44 -0.39 -1.35 16 7 C -0.07 -0.48 5.29 -104.31 -0.55 -1.03 16 8 C 0.18 1.48 4.98 -5.19 -0.03 1.45 16 9 N -0.74 -6.84 4.99 -66.41 -0.33 -7.17 16 10 C 0.71 9.91 8.53 -86.91 -0.74 9.17 16 11 O -0.57 -9.72 13.47 5.29 0.07 -9.65 16 12 N -0.64 -9.66 5.46 -15.50 -0.08 -9.74 16 13 C 0.27 5.45 8.11 -154.36 -1.25 4.20 16 14 C -0.29 -5.65 9.61 -39.83 -0.38 -6.03 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 17 C 0.26 6.53 6.26 -5.19 -0.03 6.50 16 18 C -0.53 -14.60 9.24 -34.44 -0.32 -14.92 16 19 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -25.26 13.29 55.43 0.74 -24.52 16 22 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 N -0.31 -7.01 12.42 31.44 0.39 -6.62 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.08 0.53 6.53 -51.93 -0.34 0.19 16 30 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.08 0.71 7.39 -51.93 -0.38 0.33 16 35 H 0.40 2.85 8.48 -40.82 -0.35 2.50 16 36 H 0.41 4.94 8.84 -40.82 -0.36 4.58 16 37 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 38 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -33.81 356.47 -8.96 -42.77 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.08 Total: 5.75 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -4.65 Total: -0.44 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.34 Total: -60.06 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.81 -8.96 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188975276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.477 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds