Wall clock time and date at job start Tue Mar 31 2020 10:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 N 1.46501 * 109.47078 * 79.98054 * 8 7 2 10 10 C 1.34781 * 119.99687 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00069 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99540 * 179.97438 * 10 9 8 13 13 C 1.40199 * 119.99644 * 180.02562 * 12 10 9 14 14 C 1.40404 * 125.97062 * 359.71395 * 13 12 10 15 15 C 1.35247 * 107.86324 * 179.83275 * 14 13 12 16 16 N 1.34962 * 107.86058 * 0.42960 * 15 14 13 17 17 C 1.46499 * 125.97901 * 179.70948 * 16 15 14 18 18 C 1.50707 * 109.47169 * 124.99870 * 17 16 15 19 19 H 1.08004 * 119.99831 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47072 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47007 * 119.99657 * 22 20 18 25 25 H 1.48498 * 109.46841 * 239.99523 * 22 20 18 26 26 N 1.31202 * 125.97111 * 180.02562 * 13 12 10 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46996 * 199.97619 * 8 7 2 34 34 H 1.09002 * 109.47259 * 319.97706 * 8 7 2 35 35 H 0.96995 * 120.00183 * 359.97438 * 9 8 7 36 36 H 0.96995 * 120.00330 * 359.97438 * 12 10 9 37 37 H 1.07999 * 126.06971 * 0.02562 * 14 13 12 38 38 H 1.08001 * 126.06762 * 180.15663 * 15 14 13 39 39 H 1.09000 * 109.47310 * 244.99872 * 17 16 15 40 40 H 1.08997 * 109.46986 * 5.00142 * 17 16 15 41 41 H 0.97000 * 119.99897 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 7 1.0381 -2.8284 -1.3603 10 6 0.3620 -3.9688 -1.6031 11 8 0.1217 -4.7387 -0.6931 12 7 -0.0477 -4.2559 -2.8546 13 6 -0.7515 -5.4419 -3.1071 14 6 -1.0909 -6.4177 -2.1564 15 6 -1.7670 -7.4005 -2.7938 16 7 -1.8463 -7.0686 -4.0996 17 6 -2.4918 -7.8589 -5.1508 18 6 -3.5160 -7.0105 -5.8597 19 1 -3.6709 -5.9854 -5.5571 20 6 -4.2560 -7.5434 -6.8938 21 7 -4.0678 -8.7919 -7.2619 22 14 -5.5250 -6.4917 -7.7730 23 1 -5.5431 -5.1332 -7.1734 24 1 -5.1746 -6.3933 -9.2126 25 1 -6.8664 -7.1128 -7.6313 26 7 -1.2029 -5.8366 -4.2741 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1542 -3.2997 0.3517 34 1 0.6178 -2.4555 0.6604 35 1 1.2294 -2.2141 -2.0862 36 1 0.1436 -3.6416 -3.5805 37 1 -0.8568 -6.3873 -1.1025 38 1 -2.1680 -8.2944 -2.3394 39 1 -1.7408 -8.1950 -5.8657 40 1 -2.9824 -8.7242 -4.7053 41 1 -4.5887 -9.1670 -7.9891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188975276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:27 Heat of formation + Delta-G solvation = 67.485595 kcal Electronic energy + Delta-G solvation = -24458.636260 eV Core-core repulsion = 20760.706821 eV Total energy + Delta-G solvation = -3697.929439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22962 -41.47560 -40.69694 -36.86162 -36.08073 -35.27430 -34.18649 -33.15601 -32.48099 -30.92062 -28.91297 -28.36183 -27.39491 -25.00250 -23.75789 -23.14628 -22.38320 -21.93543 -21.27946 -19.35091 -18.68860 -18.29557 -17.78673 -17.47551 -16.98177 -16.68922 -16.41083 -16.00205 -15.93720 -15.57450 -15.40970 -15.03045 -14.48511 -14.44840 -14.25904 -14.03611 -13.78654 -13.63301 -13.62627 -13.51405 -13.07641 -12.92074 -12.72650 -12.40634 -12.29839 -12.04544 -11.65041 -11.38710 -11.20385 -10.71733 -10.64761 -10.43591 -10.28367 -9.85405 -9.71279 -9.04509 -8.32115 -6.46106 0.05936 0.16821 1.09479 1.19799 1.37774 1.39255 1.52326 1.71004 2.13545 2.36681 2.41271 2.80628 2.99439 3.20447 3.43134 3.59376 3.77954 3.95711 3.98988 4.03336 4.29803 4.45635 4.53216 4.56758 4.74147 4.76234 4.79674 4.87708 4.91558 4.96574 5.01888 5.03691 5.11326 5.23211 5.34531 5.39481 5.57815 5.75265 5.75849 5.87176 5.98462 6.30852 6.64347 6.73623 7.00824 7.14705 7.23864 7.39843 8.75484 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002243 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.575055 B =12480.548696 C =13157.613860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C 0.086 3.914 4 N -0.504 5.504 5 C 0.080 3.920 6 C -0.145 4.145 7 C -0.071 4.071 8 C 0.185 3.815 9 N -0.718 5.718 10 C 0.716 3.284 11 O -0.597 6.597 12 N -0.636 5.636 13 C 0.285 3.715 14 C -0.292 4.292 15 C 0.056 3.944 16 N -0.345 5.345 17 C 0.272 3.728 18 C -0.545 4.545 19 H 0.052 0.948 20 C 0.017 3.983 21 N -0.921 5.921 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.270 1.270 26 N -0.348 5.348 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.420 0.580 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.419 17.284 15.751 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.071 4.071 4 N -0.212 5.212 5 C -0.077 4.077 6 C -0.165 4.165 7 C -0.080 4.080 8 C 0.062 3.938 9 N -0.375 5.375 10 C 0.415 3.585 11 O -0.475 6.475 12 N -0.288 5.288 13 C 0.029 3.971 14 C -0.323 4.323 15 C -0.093 4.093 16 N -0.128 5.128 17 C 0.153 3.847 18 C -0.583 4.583 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.196 1.196 26 N -0.179 5.179 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.174 0.826 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.257 0.743 37 H 0.186 0.814 38 H 0.217 0.783 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.468 17.472 15.156 26.765 hybrid contribution -0.771 -0.261 -0.547 0.981 sum 12.697 17.212 14.609 25.901 Atomic orbital electron populations 1.20851 0.89089 1.03925 1.03574 1.21023 0.98340 0.93308 0.99130 1.23023 0.89731 0.98374 0.96004 1.67697 1.09145 1.32581 1.11797 1.23150 1.01550 0.87326 0.95632 1.22351 0.94186 1.00649 0.99283 1.20159 0.94159 0.94135 0.99537 1.20025 0.98723 0.92761 0.82330 1.44837 1.59774 1.21159 1.11716 1.15677 0.78735 0.82470 0.81596 1.90853 1.62133 1.50331 1.44159 1.41361 1.57164 1.20146 1.10099 1.19068 0.96568 0.89023 0.92418 1.21689 1.12740 0.96050 1.01799 1.23165 1.00091 1.01734 0.84271 1.48812 1.41531 1.14477 1.07930 1.19334 0.91459 0.89637 0.84225 1.21427 1.20488 0.98507 1.17885 0.92960 1.25749 0.99125 0.96439 0.97018 1.70003 1.41980 1.14476 1.29526 0.85292 0.78405 0.78491 0.78174 1.19868 1.19899 1.19553 1.77244 1.19969 1.00189 1.20543 0.89853 0.89631 0.91568 0.81097 0.80641 0.82609 0.89933 0.90129 0.75264 0.74272 0.81437 0.78263 0.96094 0.92348 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.35 71.24 0.67 -0.51 16 2 C -0.12 -1.42 5.90 -19.78 -0.12 -1.53 16 3 C 0.09 1.15 10.86 84.68 0.92 2.07 16 4 N -0.50 -8.23 10.36 -195.85 -2.03 -10.26 16 5 C 0.08 1.00 11.18 84.67 0.95 1.95 16 6 C -0.14 -1.61 9.78 22.36 0.22 -1.39 16 7 C -0.07 -0.89 5.29 -19.67 -0.10 -0.99 16 8 C 0.18 2.69 4.98 85.63 0.43 3.11 16 9 N -0.72 -11.98 4.99 -482.27 -2.41 -14.39 16 10 C 0.72 18.87 8.53 179.05 1.53 20.40 16 11 O -0.60 -19.85 13.47 -4.00 -0.05 -19.90 16 12 N -0.64 -18.48 5.46 -321.22 -1.75 -20.23 16 13 C 0.28 11.19 8.11 133.31 1.08 12.27 16 14 C -0.29 -11.29 9.61 22.11 0.21 -11.07 16 15 C 0.06 2.19 11.44 83.52 0.96 3.14 16 16 N -0.35 -16.17 3.67 -351.83 -1.29 -17.46 16 17 C 0.27 14.10 6.26 85.64 0.54 14.63 16 18 C -0.54 -30.67 9.24 25.60 0.24 -30.43 16 19 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.02 0.93 5.46 84.65 0.46 1.39 16 21 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 22 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 N -0.35 -16.07 12.42 -54.43 -0.68 -16.75 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 29 H 0.07 0.81 6.53 -2.39 -0.02 0.80 16 30 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 34 H 0.08 1.27 7.39 -2.39 -0.02 1.25 16 35 H 0.41 5.02 8.48 -92.71 -0.79 4.23 16 36 H 0.42 9.72 8.84 -92.71 -0.82 8.90 16 37 H 0.17 6.28 5.91 -2.91 -0.02 6.27 16 38 H 0.20 6.17 8.06 -2.91 -0.02 6.14 16 39 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 41 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -72.48 356.47 1.55 -70.93 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.52 Total: 21.33 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 7.97 Total: 13.04 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -7.87 Total: -130.89 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.48 1.55 -70.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188975276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.418 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds