Wall clock time and date at job start Tue Mar 31 2020 10:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38854 * 120.75089 * 2 1 4 4 C 1.38062 * 119.31108 * 180.27581 * 3 2 1 5 5 C 1.50696 * 119.57162 * 179.74759 * 4 3 2 6 6 N 1.31940 * 120.85063 * 359.77134 * 4 3 2 7 7 C 1.32354 * 121.63333 * 359.97438 * 6 4 3 8 8 N 1.39385 * 119.69275 * 179.97438 * 7 6 4 9 9 C 1.34776 * 120.00547 * 354.93503 * 8 7 6 10 10 O 1.21585 * 119.99804 * 5.08621 * 9 8 7 11 11 N 1.34768 * 120.00287 * 185.09329 * 9 8 7 12 12 C 1.40181 * 120.00307 * 179.97438 * 11 9 8 13 13 C 1.40408 * 125.96958 * 359.71973 * 12 11 9 14 14 C 1.35245 * 107.86391 * 179.82428 * 13 12 11 15 15 N 1.34962 * 107.86062 * 0.42750 * 14 13 12 16 16 C 1.46496 * 125.97436 * 179.70483 * 15 14 13 17 17 C 1.50699 * 109.47091 * 125.00110 * 16 15 14 18 18 H 1.08000 * 120.00134 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99829 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47185 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47019 * 119.99935 * 21 19 17 24 24 H 1.48504 * 109.46926 * 239.99817 * 21 19 17 25 25 N 1.31209 * 125.97601 * 180.02562 * 12 11 9 26 26 C 1.38347 * 120.75639 * 179.80127 * 2 1 3 27 27 H 1.08999 * 109.47365 * 270.19433 * 1 2 3 28 28 H 1.08996 * 109.47419 * 30.19892 * 1 2 3 29 29 H 1.09002 * 109.47263 * 150.19933 * 1 2 3 30 30 H 1.08002 * 120.34287 * 359.97438 * 3 2 1 31 31 H 1.09007 * 109.47246 * 270.02160 * 5 4 3 32 32 H 1.09001 * 109.47374 * 30.02350 * 5 4 3 33 33 H 1.09002 * 109.47189 * 150.02254 * 5 4 3 34 34 H 0.97003 * 119.99778 * 174.93414 * 8 7 6 35 35 H 0.97008 * 119.99921 * 359.97438 * 11 9 8 36 36 H 1.07994 * 126.06573 * 359.96455 * 13 12 11 37 37 H 1.08005 * 126.06912 * 180.12072 * 14 13 12 38 38 H 1.09000 * 109.47763 * 245.00075 * 16 15 14 39 39 H 1.09006 * 109.47627 * 5.00241 * 16 15 14 40 40 H 0.96995 * 120.00318 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.44689 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1586 -0.0058 5 6 4.3735 2.4502 -0.0116 6 7 4.2450 0.0093 -0.0068 7 6 3.6043 -1.1488 -0.0018 8 7 4.3295 -2.3391 -0.0036 9 6 5.6724 -2.3100 -0.1134 10 8 6.2590 -1.2450 -0.1178 11 7 6.3651 -3.4613 -0.2186 12 6 7.7619 -3.4309 -0.3333 13 6 8.5625 -2.2778 -0.3578 14 6 9.8515 -2.6700 -0.4750 15 7 9.8703 -4.0183 -0.5329 16 6 11.0636 -4.8573 -0.6674 17 6 11.1016 -5.8606 0.4564 18 1 10.3152 -5.8723 1.1966 19 6 12.1402 -6.7636 0.5397 20 7 13.0975 -6.7497 -0.3619 21 14 12.1869 -8.0077 1.9324 22 1 11.0019 -7.8165 2.8068 23 1 12.1708 -9.3817 1.3694 24 1 13.4254 -7.8133 2.7284 25 7 8.5492 -4.4749 -0.4423 26 6 2.2145 -1.1889 0.0041 27 1 -0.3634 0.0035 1.0276 28 1 -0.3634 0.8881 -0.5169 29 1 -0.3634 -0.8918 -0.5107 30 1 1.6949 2.1388 -0.0004 31 1 4.5560 2.7598 -1.0407 32 1 3.8003 3.2210 0.5035 33 1 5.3258 2.3040 0.4981 34 1 3.8676 -3.1886 0.0742 35 1 5.8971 -4.3110 -0.2148 36 1 8.2115 -1.2586 -0.2921 37 1 10.7126 -2.0196 -0.5199 38 1 11.0330 -5.3823 -1.6222 39 1 11.9548 -4.2311 -0.6256 40 1 13.8280 -7.3851 -0.3036 41 1 1.6942 -2.1353 0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191669846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:16 Heat of formation + Delta-G solvation = 102.673257 kcal Electronic energy + Delta-G solvation = -24637.391047 eV Core-core repulsion = 20940.987460 eV Total energy + Delta-G solvation = -3696.403587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15575 -40.42064 -39.27594 -35.50318 -34.64519 -34.28632 -33.34085 -31.63496 -30.63078 -29.26107 -28.27563 -27.52670 -26.61057 -23.94305 -22.76714 -22.09668 -21.15791 -20.21458 -19.79146 -18.18226 -17.49149 -16.56698 -16.43804 -16.23157 -15.98687 -15.76389 -15.04746 -14.70460 -14.48453 -14.10069 -13.91793 -13.83384 -13.59514 -13.03727 -12.82214 -12.78100 -12.72416 -12.36786 -12.30065 -12.20196 -11.91590 -11.75902 -11.07064 -10.87632 -10.72380 -10.36645 -10.25905 -10.19152 -9.79299 -9.61719 -9.46059 -9.12229 -8.62789 -8.42169 -8.08047 -7.40420 -6.23170 -4.27945 0.93350 1.12194 2.14522 2.67443 3.09853 3.22929 3.30362 3.36038 3.44244 3.63811 3.90648 4.05246 4.28532 4.34977 4.38796 4.70794 4.83529 4.90150 5.11942 5.12971 5.16581 5.32283 5.37294 5.49468 5.50461 5.54243 5.71033 5.82519 5.91127 6.02561 6.13354 6.23249 6.45748 6.56120 6.69291 6.85851 6.94897 7.09062 7.46520 7.67501 7.74133 7.90548 8.07560 8.09965 8.57335 8.67048 8.82469 9.37557 10.85579 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.002305 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.472630 B =12141.980196 C =12748.229347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 C -0.213 4.213 4 C 0.166 3.834 5 C -0.104 4.104 6 N -0.475 5.475 7 C 0.393 3.607 8 N -0.668 5.668 9 C 0.701 3.299 10 O -0.502 6.502 11 N -0.641 5.641 12 C 0.275 3.725 13 C -0.285 4.285 14 C 0.052 3.948 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.306 5.306 26 C -0.221 4.221 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.406 0.594 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.297 14.293 -0.113 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.021 4.021 3 C -0.234 4.234 4 C 0.027 3.973 5 C -0.161 4.161 6 N -0.191 5.191 7 C 0.160 3.840 8 N -0.316 5.316 9 C 0.400 3.600 10 O -0.370 6.370 11 N -0.292 5.292 12 C 0.021 3.979 13 C -0.316 4.316 14 C -0.098 4.098 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.565 4.565 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.138 5.138 26 C -0.245 4.245 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.241 0.759 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.397 13.775 -0.268 26.295 hybrid contribution -1.211 -0.978 0.773 1.738 sum -23.608 12.797 0.505 26.858 Atomic orbital electron populations 1.20808 0.90112 1.03306 1.02889 1.20009 0.96431 0.92181 0.93479 1.21721 0.94722 0.98561 1.08424 1.21179 0.90803 0.93400 0.91889 1.20728 1.00670 0.91521 1.03216 1.67512 1.39320 0.96401 1.15861 1.18031 0.87138 0.85722 0.93061 1.42611 1.05911 1.07624 1.75490 1.15669 0.80936 0.84239 0.79196 1.90991 1.66405 1.27917 1.51660 1.41364 1.03779 1.08143 1.75910 1.18729 0.82520 0.93422 1.03201 1.21530 0.90725 0.99769 1.19614 1.22555 0.98854 0.86005 1.02419 1.49053 1.05006 1.04519 1.51615 1.19742 0.77201 0.89951 0.99047 1.21303 1.08797 1.15849 1.10560 0.91260 1.24955 0.95041 0.97473 0.96712 1.69924 1.11657 1.37153 1.34641 0.86275 0.78085 0.80612 0.81539 1.19587 1.20716 1.20774 1.77319 0.88500 1.19794 1.28150 1.21206 0.92149 0.99544 1.11576 0.90465 0.90944 0.91038 0.85001 0.90280 0.90816 0.89976 0.74981 0.75911 0.82084 0.81485 0.93739 0.92508 0.92399 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.06 36.00 0.36 -0.19 16 2 C -0.01 -0.11 5.91 -104.36 -0.62 -0.72 16 3 C -0.21 -1.88 9.44 -39.42 -0.37 -2.26 16 4 C 0.17 1.90 6.78 -82.61 -0.56 1.34 16 5 C -0.10 -0.93 10.17 36.00 0.37 -0.57 16 6 N -0.48 -6.89 7.80 -8.60 -0.07 -6.95 16 7 C 0.39 4.84 7.42 -154.72 -1.15 3.69 16 8 N -0.67 -7.66 5.39 -15.82 -0.09 -7.74 16 9 C 0.70 11.00 8.49 -86.93 -0.74 10.26 16 10 O -0.50 -9.64 11.73 5.29 0.06 -9.58 16 11 N -0.64 -10.16 5.45 -15.51 -0.08 -10.24 16 12 C 0.28 5.64 8.11 -154.37 -1.25 4.38 16 13 C -0.28 -5.83 9.61 -39.83 -0.38 -6.21 16 14 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 15 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 16 C 0.26 6.62 6.26 -5.20 -0.03 6.59 16 17 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 21 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 26 C -0.22 -1.99 9.64 -39.24 -0.38 -2.36 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 29 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 2.96 8.72 -40.82 -0.36 2.60 16 35 H 0.41 5.04 8.84 -40.82 -0.36 4.68 16 36 H 0.16 3.27 5.91 -52.49 -0.31 2.96 16 37 H 0.17 2.80 8.06 -52.48 -0.42 2.37 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -35.52 357.31 -9.49 -45.01 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.21 Total: 5.57 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -5.36 Total: 1.33 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.66 Total: -64.17 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.52 -9.49 -45.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191669846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.683 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds