Wall clock time and date at job start Tue Mar 31 2020 10:54:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.47198 * 2 1
4 4 C 1.50706 * 109.47152 * 119.99860 * 2 1 3
5 5 N 1.32151 * 120.53680 * 290.35699 * 4 2 1
6 6 C 1.31864 * 120.96642 * 179.97438 * 5 4 2
7 7 N 1.31883 * 122.09631 * 0.02562 * 6 5 4
8 8 C 1.32126 * 120.96981 * 0.02562 * 7 6 5
9 9 C 1.39948 * 120.53491 * 110.33762 * 4 2 1
10 10 C 1.47801 * 120.94192 * 359.97438 * 9 4 2
11 11 O 1.21569 * 120.00146 * 323.55075 * 10 9 4
12 12 N 1.34774 * 119.99992 * 143.55376 * 10 9 4
13 13 C 1.40084 * 120.00240 * 179.97438 * 12 10 9
14 14 C 1.40427 * 125.97356 * 359.71480 * 13 12 10
15 15 C 1.35235 * 107.86636 * 179.89053 * 14 13 12
16 16 N 1.34966 * 107.86329 * 0.36476 * 15 14 13
17 17 C 1.46508 * 125.97484 * 179.76680 * 16 15 14
18 18 C 1.50700 * 109.47318 * 124.97870 * 17 16 15
19 19 H 1.07999 * 119.99917 * 0.02562 * 18 17 16
20 20 C 1.37868 * 119.99989 * 180.02562 * 18 17 16
21 21 N 1.31517 * 120.00417 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.47053 * 59.99437 * 22 20 18
24 24 H 1.48501 * 109.47543 * 180.02562 * 22 20 18
25 25 H 1.48499 * 109.47096 * 299.99950 * 22 20 18
26 26 N 1.31229 * 125.97691 * 180.02562 * 13 12 10
27 27 H 1.09001 * 109.46858 * 299.99887 * 1 2 3
28 28 H 1.08995 * 109.47269 * 60.00134 * 1 2 3
29 29 H 1.09005 * 109.47146 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46858 * 240.00113 * 2 1 3
31 31 H 1.09001 * 109.47268 * 180.02562 * 3 2 1
32 32 H 1.09003 * 109.46645 * 300.00135 * 3 2 1
33 33 H 1.08996 * 109.47114 * 59.99779 * 3 2 1
34 34 H 1.08004 * 118.94701 * 179.97438 * 6 5 4
35 35 H 1.08003 * 120.53562 * 179.97438 * 8 7 6
36 36 H 0.96997 * 119.99778 * 359.97438 * 12 10 9
37 37 H 1.07999 * 126.06396 * 0.03204 * 14 13 12
38 38 H 1.07998 * 126.06856 * 180.11939 * 15 14 13
39 39 H 1.09000 * 109.47019 * 244.98397 * 17 16 15
40 40 H 1.09004 * 109.46784 * 4.97510 * 17 16 15
41 41 H 0.96997 * 120.00761 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 1.2305
5 7 1.8829 -0.1687 2.4266
6 6 2.3187 -0.7831 3.5089
7 7 2.9198 -1.9557 3.4550
8 6 3.1119 -2.5688 2.3005
9 6 2.6643 -1.9546 1.1250
10 6 2.8541 -2.6015 -0.1903
11 8 1.9985 -2.4979 -1.0477
12 7 3.9756 -3.3062 -0.4391
13 6 4.1553 -3.9198 -1.6855
14 6 3.2507 -3.8870 -2.7591
15 6 3.7903 -4.5937 -3.7781
16 7 4.9866 -5.0648 -3.3673
17 6 5.9056 -5.8868 -4.1586
18 6 7.2587 -5.2249 -4.2047
19 1 7.4183 -4.2862 -3.6952
20 6 8.2929 -5.8179 -4.8973
21 7 8.0988 -6.9613 -5.5174
22 14 9.9699 -4.9972 -4.9551
23 1 10.4985 -4.8534 -3.5749
24 1 10.9012 -5.8298 -5.7581
25 1 9.8432 -3.6555 -5.5789
26 7 5.1958 -4.6305 -2.0521
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3634 -1.0277 0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 2.1797 -0.3104 4.4701
35 1 3.6053 -3.5289 2.2645
36 1 4.6584 -3.3885 0.2449
37 1 2.2948 -3.3845 -2.7700
38 1 3.3417 -4.7560 -4.7470
39 1 5.9982 -6.8716 -3.7007
40 1 5.5179 -5.9923 -5.1719
41 1 8.8264 -7.3787 -6.0044
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000265605534.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:03
Heat of formation + Delta-G solvation = 72.397380 kcal
Electronic energy + Delta-G solvation = -25243.101734 eV
Core-core repulsion = 21545.385286 eV
Total energy + Delta-G solvation = -3697.716448 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.67040 -42.04118 -40.37986 -37.26704 -36.20498 -35.33055 -34.23059 -33.19060
-32.32759 -30.96613 -28.67473 -28.06205 -26.62366 -26.01417 -24.89235 -23.20116
-22.06262 -21.83318 -21.15775 -19.00927 -18.82314 -18.66514 -18.09945 -17.66433
-17.10194 -16.58796 -16.23084 -16.02387 -15.75478 -15.63585 -15.26286 -15.05578
-14.57303 -14.53864 -14.23384 -14.06473 -13.83536 -13.68930 -13.06241 -12.99780
-12.78756 -12.68538 -12.52404 -12.30694 -12.29904 -12.17943 -11.97043 -11.65497
-11.53164 -11.42357 -10.93457 -10.75889 -10.71180 -10.38708 -9.78313 -9.15748
-8.33282 -6.47272 -0.67431 -0.13934 0.94556 1.22334 1.38603 1.40154
1.45806 1.49664 2.16520 2.23004 2.37905 2.59836 2.85532 2.98941
3.02973 3.15815 3.36572 3.67924 3.95748 4.06449 4.13765 4.17068
4.25332 4.38320 4.61772 4.72197 4.79812 4.88614 4.90034 4.92166
4.94293 5.01641 5.06500 5.10929 5.19134 5.31099 5.38861 5.56249
5.73982 5.79669 5.86715 6.12954 6.27432 6.64024 6.82867 6.88302
7.02593 7.22826 8.74263
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.019469 B = 0.002785 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1437.848301 B =10051.047478 C =10367.907549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.067 4.067
3 C -0.135 4.135
4 C 0.238 3.762
5 N -0.523 5.523
6 C 0.319 3.681
7 N -0.534 5.534
8 C 0.194 3.806
9 C -0.248 4.248
10 C 0.582 3.418
11 O -0.518 6.518
12 N -0.615 5.615
13 C 0.265 3.735
14 C -0.289 4.289
15 C 0.057 3.943
16 N -0.342 5.342
17 C 0.272 3.728
18 C -0.549 4.549
19 H 0.053 0.947
20 C 0.020 3.980
21 N -0.920 5.920
22 Si 0.969 3.031
23 H -0.273 1.273
24 H -0.274 1.274
25 H -0.270 1.270
26 N -0.342 5.342
27 H 0.065 0.935
28 H 0.077 0.923
29 H 0.045 0.955
30 H 0.093 0.907
31 H 0.044 0.956
32 H 0.075 0.925
33 H 0.071 0.929
34 H 0.237 0.763
35 H 0.196 0.804
36 H 0.423 0.577
37 H 0.172 0.828
38 H 0.202 0.798
39 H 0.022 0.978
40 H 0.059 0.941
41 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.671 13.545 14.692 24.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.086 4.086
3 C -0.192 4.192
4 C 0.091 3.909
5 N -0.236 5.236
6 C 0.033 3.967
7 N -0.247 5.247
8 C 0.027 3.973
9 C -0.256 4.256
10 C 0.368 3.632
11 O -0.393 6.393
12 N -0.264 5.264
13 C 0.010 3.990
14 C -0.320 4.320
15 C -0.091 4.091
16 N -0.124 5.124
17 C 0.154 3.846
18 C -0.587 4.587
19 H 0.071 0.929
20 C -0.181 4.181
21 N -0.559 5.559
22 Si 0.794 3.206
23 H -0.198 1.198
24 H -0.199 1.199
25 H -0.195 1.195
26 N -0.173 5.173
27 H 0.084 0.916
28 H 0.096 0.904
29 H 0.064 0.936
30 H 0.111 0.889
31 H 0.063 0.937
32 H 0.094 0.906
33 H 0.090 0.910
34 H 0.253 0.747
35 H 0.213 0.787
36 H 0.261 0.739
37 H 0.189 0.811
38 H 0.219 0.781
39 H 0.040 0.960
40 H 0.077 0.923
41 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -13.123 13.389 15.169 24.116
hybrid contribution 0.786 -0.335 -0.907 1.246
sum -12.337 13.053 14.262 22.935
Atomic orbital electron populations
1.21629 0.91743 1.01805 1.03178 1.20551 0.98232 0.97071 0.92739
1.21752 1.00336 0.93617 1.03537 1.22019 0.85709 0.88499 0.94672
1.68415 1.20734 1.35988 0.98486 1.26020 0.85399 0.86770 0.98485
1.68588 1.16576 1.11383 1.28185 1.23898 0.88749 0.98826 0.85862
1.21274 1.09391 1.00126 0.94850 1.17940 0.80657 0.77534 0.87032
1.90698 1.42551 1.59237 1.46826 1.42345 1.21645 1.50019 1.12348
1.19320 0.94149 0.97329 0.88177 1.21726 1.04669 1.13076 0.92525
1.23195 0.86989 0.97333 1.01620 1.48857 1.15338 1.39467 1.08742
1.19346 0.87368 0.88758 0.89149 1.21376 0.95686 1.08003 1.33610
0.92877 1.25714 1.02798 0.95365 0.94212 1.69980 1.34635 1.17741
1.33557 0.85432 0.78295 0.78528 0.78384 1.19841 1.19875 1.19473
1.77271 1.22132 1.20986 0.96922 0.91602 0.90409 0.93593 0.88859
0.93657 0.90582 0.90982 0.74701 0.78682 0.73882 0.81066 0.78141
0.95992 0.92279 0.91826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.24 9.18 71.98 0.66 -1.58 16
2 C -0.07 -1.35 2.72 -11.54 -0.03 -1.38 16
3 C -0.13 -2.28 9.02 71.98 0.65 -1.63 16
4 C 0.24 4.96 5.55 42.93 0.24 5.19 16
5 N -0.52 -9.57 9.89 -187.04 -1.85 -11.42 16
6 C 0.32 4.75 12.27 180.84 2.22 6.97 16
7 N -0.53 -9.20 10.42 -198.96 -2.07 -11.27 16
8 C 0.19 3.36 10.64 85.07 0.90 4.27 16
9 C -0.25 -5.26 5.81 -19.91 -0.12 -5.38 16
10 C 0.58 15.30 7.01 86.77 0.61 15.90 16
11 O -0.52 -15.86 11.61 -3.93 -0.05 -15.90 16
12 N -0.61 -17.30 5.38 -310.16 -1.67 -18.97 16
13 C 0.26 9.91 8.11 133.35 1.08 11.00 16
14 C -0.29 -10.52 9.60 22.11 0.21 -10.31 16
15 C 0.06 2.14 11.43 83.52 0.96 3.09 16
16 N -0.34 -15.50 3.67 -351.83 -1.29 -16.79 16
17 C 0.27 13.81 6.26 85.63 0.54 14.35 16
18 C -0.55 -30.42 9.24 25.60 0.24 -30.19 16
19 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16
20 C 0.02 1.07 5.46 84.65 0.46 1.53 16
21 N -0.92 -51.58 13.29 21.44 0.28 -51.30 16
22 Si 0.97 43.02 29.54 68.60 2.03 45.04 16
23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
26 N -0.34 -15.26 12.42 -54.48 -0.68 -15.94 16
27 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16
28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16
30 H 0.09 2.28 5.30 -2.39 -0.01 2.27 16
31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.07 1.15 7.92 -2.39 -0.02 1.13 16
34 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16
35 H 0.20 2.41 7.77 -2.91 -0.02 2.39 16
36 H 0.42 9.60 8.14 -92.71 -0.75 8.84 16
37 H 0.17 5.86 5.91 -2.91 -0.02 5.85 16
38 H 0.20 5.87 8.06 -2.91 -0.02 5.85 16
39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.06 2.92 8.07 -2.38 -0.02 2.90 16
41 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16
Total: -1.00 -67.95 354.02 3.64 -64.31
By element:
Atomic # 1 Polarization: 20.08 SS G_CDS: 0.32 Total: 20.40 kcal
Atomic # 6 Polarization: 3.22 SS G_CDS: 8.62 Total: 11.84 kcal
Atomic # 7 Polarization: -118.41 SS G_CDS: -7.28 Total: -125.69 kcal
Atomic # 8 Polarization: -15.86 SS G_CDS: -0.05 Total: -15.90 kcal
Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal
Total: -67.95 3.64 -64.31 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000265605534.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.708 kcal
(2) G-P(sol) polarization free energy of solvation -67.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds