Wall clock time and date at job start Tue Mar 31 2020 10:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 C 1.50706 * 109.47152 * 119.99860 * 2 1 3 5 5 N 1.32151 * 120.53680 * 290.35699 * 4 2 1 6 6 C 1.31864 * 120.96642 * 179.97438 * 5 4 2 7 7 N 1.31883 * 122.09631 * 0.02562 * 6 5 4 8 8 C 1.32126 * 120.96981 * 0.02562 * 7 6 5 9 9 C 1.39948 * 120.53491 * 110.33762 * 4 2 1 10 10 C 1.47801 * 120.94192 * 359.97438 * 9 4 2 11 11 O 1.21569 * 120.00146 * 323.55075 * 10 9 4 12 12 N 1.34774 * 119.99992 * 143.55376 * 10 9 4 13 13 C 1.40084 * 120.00240 * 179.97438 * 12 10 9 14 14 C 1.40427 * 125.97356 * 359.71480 * 13 12 10 15 15 C 1.35235 * 107.86636 * 179.89053 * 14 13 12 16 16 N 1.34966 * 107.86329 * 0.36476 * 15 14 13 17 17 C 1.46508 * 125.97484 * 179.76680 * 16 15 14 18 18 C 1.50700 * 109.47318 * 124.97870 * 17 16 15 19 19 H 1.07999 * 119.99917 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00417 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47053 * 59.99437 * 22 20 18 24 24 H 1.48501 * 109.47543 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47096 * 299.99950 * 22 20 18 26 26 N 1.31229 * 125.97691 * 180.02562 * 13 12 10 27 27 H 1.09001 * 109.46858 * 299.99887 * 1 2 3 28 28 H 1.08995 * 109.47269 * 60.00134 * 1 2 3 29 29 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46858 * 240.00113 * 2 1 3 31 31 H 1.09001 * 109.47268 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46645 * 300.00135 * 3 2 1 33 33 H 1.08996 * 109.47114 * 59.99779 * 3 2 1 34 34 H 1.08004 * 118.94701 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.53562 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99778 * 359.97438 * 12 10 9 37 37 H 1.07999 * 126.06396 * 0.03204 * 14 13 12 38 38 H 1.07998 * 126.06856 * 180.11939 * 15 14 13 39 39 H 1.09000 * 109.47019 * 244.98397 * 17 16 15 40 40 H 1.09004 * 109.46784 * 4.97510 * 17 16 15 41 41 H 0.96997 * 120.00761 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8829 -0.1687 2.4266 6 6 2.3187 -0.7831 3.5089 7 7 2.9198 -1.9557 3.4550 8 6 3.1119 -2.5688 2.3005 9 6 2.6643 -1.9546 1.1250 10 6 2.8541 -2.6015 -0.1903 11 8 1.9985 -2.4979 -1.0477 12 7 3.9756 -3.3062 -0.4391 13 6 4.1553 -3.9198 -1.6855 14 6 3.2507 -3.8870 -2.7591 15 6 3.7903 -4.5937 -3.7781 16 7 4.9866 -5.0648 -3.3673 17 6 5.9056 -5.8868 -4.1586 18 6 7.2587 -5.2249 -4.2047 19 1 7.4183 -4.2862 -3.6952 20 6 8.2929 -5.8179 -4.8973 21 7 8.0988 -6.9613 -5.5174 22 14 9.9699 -4.9972 -4.9551 23 1 10.4985 -4.8534 -3.5749 24 1 10.9012 -5.8298 -5.7581 25 1 9.8432 -3.6555 -5.5789 26 7 5.1958 -4.6305 -2.0521 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.1797 -0.3104 4.4701 35 1 3.6053 -3.5289 2.2645 36 1 4.6584 -3.3885 0.2449 37 1 2.2948 -3.3845 -2.7700 38 1 3.3417 -4.7560 -4.7470 39 1 5.9982 -6.8716 -3.7007 40 1 5.5179 -5.9923 -5.1719 41 1 8.8264 -7.3787 -6.0044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265605534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:03 Heat of formation + Delta-G solvation = 72.397380 kcal Electronic energy + Delta-G solvation = -25243.101734 eV Core-core repulsion = 21545.385286 eV Total energy + Delta-G solvation = -3697.716448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67040 -42.04118 -40.37986 -37.26704 -36.20498 -35.33055 -34.23059 -33.19060 -32.32759 -30.96613 -28.67473 -28.06205 -26.62366 -26.01417 -24.89235 -23.20116 -22.06262 -21.83318 -21.15775 -19.00927 -18.82314 -18.66514 -18.09945 -17.66433 -17.10194 -16.58796 -16.23084 -16.02387 -15.75478 -15.63585 -15.26286 -15.05578 -14.57303 -14.53864 -14.23384 -14.06473 -13.83536 -13.68930 -13.06241 -12.99780 -12.78756 -12.68538 -12.52404 -12.30694 -12.29904 -12.17943 -11.97043 -11.65497 -11.53164 -11.42357 -10.93457 -10.75889 -10.71180 -10.38708 -9.78313 -9.15748 -8.33282 -6.47272 -0.67431 -0.13934 0.94556 1.22334 1.38603 1.40154 1.45806 1.49664 2.16520 2.23004 2.37905 2.59836 2.85532 2.98941 3.02973 3.15815 3.36572 3.67924 3.95748 4.06449 4.13765 4.17068 4.25332 4.38320 4.61772 4.72197 4.79812 4.88614 4.90034 4.92166 4.94293 5.01641 5.06500 5.10929 5.19134 5.31099 5.38861 5.56249 5.73982 5.79669 5.86715 6.12954 6.27432 6.64024 6.82867 6.88302 7.02593 7.22826 8.74263 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002785 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.848301 B =10051.047478 C =10367.907549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 C -0.135 4.135 4 C 0.238 3.762 5 N -0.523 5.523 6 C 0.319 3.681 7 N -0.534 5.534 8 C 0.194 3.806 9 C -0.248 4.248 10 C 0.582 3.418 11 O -0.518 6.518 12 N -0.615 5.615 13 C 0.265 3.735 14 C -0.289 4.289 15 C 0.057 3.943 16 N -0.342 5.342 17 C 0.272 3.728 18 C -0.549 4.549 19 H 0.053 0.947 20 C 0.020 3.980 21 N -0.920 5.920 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.270 1.270 26 N -0.342 5.342 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.196 0.804 36 H 0.423 0.577 37 H 0.172 0.828 38 H 0.202 0.798 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 13.545 14.692 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.192 4.192 4 C 0.091 3.909 5 N -0.236 5.236 6 C 0.033 3.967 7 N -0.247 5.247 8 C 0.027 3.973 9 C -0.256 4.256 10 C 0.368 3.632 11 O -0.393 6.393 12 N -0.264 5.264 13 C 0.010 3.990 14 C -0.320 4.320 15 C -0.091 4.091 16 N -0.124 5.124 17 C 0.154 3.846 18 C -0.587 4.587 19 H 0.071 0.929 20 C -0.181 4.181 21 N -0.559 5.559 22 Si 0.794 3.206 23 H -0.198 1.198 24 H -0.199 1.199 25 H -0.195 1.195 26 N -0.173 5.173 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.213 0.787 36 H 0.261 0.739 37 H 0.189 0.811 38 H 0.219 0.781 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.123 13.389 15.169 24.116 hybrid contribution 0.786 -0.335 -0.907 1.246 sum -12.337 13.053 14.262 22.935 Atomic orbital electron populations 1.21629 0.91743 1.01805 1.03178 1.20551 0.98232 0.97071 0.92739 1.21752 1.00336 0.93617 1.03537 1.22019 0.85709 0.88499 0.94672 1.68415 1.20734 1.35988 0.98486 1.26020 0.85399 0.86770 0.98485 1.68588 1.16576 1.11383 1.28185 1.23898 0.88749 0.98826 0.85862 1.21274 1.09391 1.00126 0.94850 1.17940 0.80657 0.77534 0.87032 1.90698 1.42551 1.59237 1.46826 1.42345 1.21645 1.50019 1.12348 1.19320 0.94149 0.97329 0.88177 1.21726 1.04669 1.13076 0.92525 1.23195 0.86989 0.97333 1.01620 1.48857 1.15338 1.39467 1.08742 1.19346 0.87368 0.88758 0.89149 1.21376 0.95686 1.08003 1.33610 0.92877 1.25714 1.02798 0.95365 0.94212 1.69980 1.34635 1.17741 1.33557 0.85432 0.78295 0.78528 0.78384 1.19841 1.19875 1.19473 1.77271 1.22132 1.20986 0.96922 0.91602 0.90409 0.93593 0.88859 0.93657 0.90582 0.90982 0.74701 0.78682 0.73882 0.81066 0.78141 0.95992 0.92279 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.18 71.98 0.66 -1.58 16 2 C -0.07 -1.35 2.72 -11.54 -0.03 -1.38 16 3 C -0.13 -2.28 9.02 71.98 0.65 -1.63 16 4 C 0.24 4.96 5.55 42.93 0.24 5.19 16 5 N -0.52 -9.57 9.89 -187.04 -1.85 -11.42 16 6 C 0.32 4.75 12.27 180.84 2.22 6.97 16 7 N -0.53 -9.20 10.42 -198.96 -2.07 -11.27 16 8 C 0.19 3.36 10.64 85.07 0.90 4.27 16 9 C -0.25 -5.26 5.81 -19.91 -0.12 -5.38 16 10 C 0.58 15.30 7.01 86.77 0.61 15.90 16 11 O -0.52 -15.86 11.61 -3.93 -0.05 -15.90 16 12 N -0.61 -17.30 5.38 -310.16 -1.67 -18.97 16 13 C 0.26 9.91 8.11 133.35 1.08 11.00 16 14 C -0.29 -10.52 9.60 22.11 0.21 -10.31 16 15 C 0.06 2.14 11.43 83.52 0.96 3.09 16 16 N -0.34 -15.50 3.67 -351.83 -1.29 -16.79 16 17 C 0.27 13.81 6.26 85.63 0.54 14.35 16 18 C -0.55 -30.42 9.24 25.60 0.24 -30.19 16 19 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 20 C 0.02 1.07 5.46 84.65 0.46 1.53 16 21 N -0.92 -51.58 13.29 21.44 0.28 -51.30 16 22 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 N -0.34 -15.26 12.42 -54.48 -0.68 -15.94 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.09 2.28 5.30 -2.39 -0.01 2.27 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.15 7.92 -2.39 -0.02 1.13 16 34 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.20 2.41 7.77 -2.91 -0.02 2.39 16 36 H 0.42 9.60 8.14 -92.71 -0.75 8.84 16 37 H 0.17 5.86 5.91 -2.91 -0.02 5.85 16 38 H 0.20 5.87 8.06 -2.91 -0.02 5.85 16 39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.92 8.07 -2.38 -0.02 2.90 16 41 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.95 354.02 3.64 -64.31 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.32 Total: 20.40 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 8.62 Total: 11.84 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.28 Total: -125.69 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.05 Total: -15.90 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -67.95 3.64 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265605534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.708 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds