Wall clock time and date at job start Tue Mar 31 2020 10:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35252 * 126.06610 * 2 1 4 4 C 1.40430 * 107.86296 * 179.97438 * 3 2 1 5 5 N 1.39984 * 125.97940 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99560 * 0.02562 * 5 4 3 7 7 H 1.08997 * 110.27033 * 32.92633 * 6 5 4 8 8 C 1.54345 * 110.30159 * 155.00034 * 6 5 4 9 9 C 1.54342 * 102.39363 * 92.56359 * 8 6 5 10 10 C 1.51380 * 105.17165 * 26.35803 * 9 8 6 11 11 C 1.38519 * 130.35781 * 162.77999 * 10 9 8 12 12 C 1.38068 * 120.24801 * 180.02562 * 11 10 9 13 13 C 1.38478 * 119.90875 * 359.97438 * 12 11 10 14 14 F 1.35095 * 120.05902 * 180.02562 * 13 12 11 15 15 C 1.38330 * 119.87834 * 0.02562 * 13 12 11 16 16 C 1.38227 * 109.75075 * 342.80205 * 10 9 8 17 17 N 1.31229 * 108.04520 * 0.24623 * 4 3 2 18 18 N 1.34961 * 126.06898 * 179.97438 * 2 1 3 19 19 C 1.46496 * 125.97365 * 0.04738 * 18 2 1 20 20 C 1.50705 * 109.46736 * 90.00573 * 19 18 2 21 21 H 1.07997 * 120.00107 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99704 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00461 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99718 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46942 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47018 * 120.00121 * 24 22 20 27 27 H 1.48497 * 109.46766 * 239.99951 * 24 22 20 28 28 H 1.09002 * 109.47439 * 90.02402 * 1 2 3 29 29 H 1.09001 * 109.47126 * 210.02205 * 1 2 3 30 30 H 1.08993 * 109.47298 * 330.02478 * 1 2 3 31 31 H 1.07999 * 126.06639 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00626 * 180.02562 * 5 4 3 33 33 H 1.08994 * 110.81993 * 210.79126 * 8 6 5 34 34 H 1.09003 * 110.81935 * 334.33805 * 8 6 5 35 35 H 1.09002 * 110.30197 * 145.28214 * 9 8 6 36 36 H 1.08996 * 110.30559 * 267.43385 * 9 8 6 37 37 H 1.07989 * 119.87774 * 0.04516 * 11 10 9 38 38 H 1.07994 * 120.04428 * 180.02562 * 12 11 10 39 39 H 1.08001 * 119.89679 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47385 * 210.00209 * 19 18 2 41 41 H 1.08997 * 109.47327 * 330.00919 * 19 18 2 42 42 H 0.97000 * 120.00587 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6373 0.6546 0.0006 5 7 4.7724 1.4738 0.0003 6 6 4.6238 2.9313 -0.0002 7 1 3.7317 3.2201 0.5555 8 6 5.8747 3.5973 0.6113 9 6 6.7487 3.8652 -0.6323 10 6 5.7731 3.9881 -1.7832 11 6 5.9413 4.5276 -3.0479 12 6 4.8938 4.5313 -3.9474 13 6 3.6703 3.9935 -3.5847 14 9 2.6435 3.9951 -4.4626 15 6 3.5016 3.4546 -2.3219 16 6 4.5522 3.4514 -1.4200 17 7 3.6337 -0.6577 -0.0044 18 7 2.3016 -1.0909 0.0005 19 6 1.8499 -2.4845 0.0001 20 6 1.6962 -2.9623 -1.4209 21 1 1.9136 -2.2948 -2.2416 22 6 1.2790 -4.2519 -1.6732 23 7 1.0147 -5.0650 -0.6739 24 14 1.0890 -4.8444 -3.4346 25 1 1.4452 -3.7454 -4.3676 26 1 1.9887 -6.0028 -3.6670 27 1 -0.3184 -5.2559 -3.6694 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 1.9719 2.1212 0.0004 32 1 5.6573 1.0766 0.0004 33 1 5.6123 4.5309 1.1089 34 1 6.3778 2.9182 1.2996 35 1 7.3073 4.7930 -0.5092 36 1 7.4306 3.0319 -0.8019 37 1 6.8953 4.9465 -3.3316 38 1 5.0287 4.9523 -4.9326 39 1 2.5474 3.0354 -2.0386 40 1 2.5842 -3.1046 0.5144 41 1 0.8909 -2.5558 0.5132 42 1 0.7215 -5.9724 -0.8514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271029446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:30 Heat of formation + Delta-G solvation = 37.126923 kcal Electronic energy + Delta-G solvation = -25547.649036 eV Core-core repulsion = 21828.483185 eV Total energy + Delta-G solvation = -3719.165851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.91160 -41.96523 -41.05177 -37.43296 -35.78202 -34.68789 -32.88406 -32.45727 -31.78641 -29.60563 -28.45945 -27.95141 -26.97750 -24.80403 -23.92795 -22.20729 -21.96361 -21.14718 -20.40043 -18.79613 -18.23712 -17.69931 -17.46383 -16.85940 -16.68049 -16.52171 -16.16640 -16.01103 -15.85168 -15.21352 -14.87228 -14.70689 -14.53645 -14.35998 -14.16538 -13.73037 -13.60097 -13.41127 -13.27550 -13.11494 -12.90180 -12.79510 -12.67462 -12.51062 -12.26464 -12.12806 -11.96743 -11.87277 -11.78095 -11.19724 -10.83083 -10.74563 -9.97842 -9.42711 -9.36572 -8.61189 -8.26434 -6.50873 0.14114 0.23541 1.25944 1.33713 1.36171 1.48392 1.76111 2.22495 2.31687 2.53304 2.92271 2.95611 3.14044 3.49041 3.62857 3.91473 3.97498 4.05272 4.15169 4.24327 4.31028 4.37776 4.49054 4.65645 4.72449 4.74139 4.81645 4.85177 4.91152 4.97071 4.98774 5.09086 5.09891 5.15583 5.19810 5.25603 5.29320 5.37113 5.53275 5.58246 5.64737 5.83129 5.94228 6.34844 6.41152 6.65829 6.80941 7.20330 7.37049 8.72473 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.003610 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.490256 B = 7753.843756 C = 8596.511931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.095 3.905 3 C -0.329 4.329 4 C 0.320 3.680 5 N -0.704 5.704 6 C 0.203 3.797 7 H 0.089 0.911 8 C -0.116 4.116 9 C -0.077 4.077 10 C -0.097 4.097 11 C -0.083 4.083 12 C -0.149 4.149 13 C 0.063 3.937 14 F -0.154 7.154 15 C -0.141 4.141 16 C -0.099 4.099 17 N -0.401 5.401 18 N -0.355 5.355 19 C 0.279 3.721 20 C -0.550 4.550 21 H 0.044 0.956 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.969 3.031 25 H -0.277 1.277 26 H -0.273 1.273 27 H -0.264 1.264 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.402 0.598 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.018 0.982 41 H 0.048 0.952 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 23.333 0.314 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 C -0.361 4.361 4 C 0.064 3.936 5 N -0.345 5.345 6 C 0.098 3.902 7 H 0.107 0.893 8 C -0.154 4.154 9 C -0.114 4.114 10 C -0.098 4.098 11 C -0.100 4.100 12 C -0.168 4.168 13 C 0.044 3.956 14 F -0.133 7.133 15 C -0.161 4.161 16 C -0.102 4.102 17 N -0.234 5.234 18 N -0.136 5.136 19 C 0.159 3.841 20 C -0.588 4.588 21 H 0.062 0.938 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.793 3.207 25 H -0.202 1.202 26 H -0.199 1.199 27 H -0.189 1.189 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.175 0.825 32 H 0.238 0.762 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.454 22.076 0.371 24.018 hybrid contribution -0.883 -0.542 -1.260 1.631 sum 8.571 21.534 -0.889 23.194 Atomic orbital electron populations 1.20465 0.85982 1.04160 1.03562 1.21595 0.96211 0.86903 0.98919 1.20726 0.90119 0.98858 1.26431 1.19450 0.89206 0.88977 0.96013 1.43599 1.03419 1.02835 1.84651 1.20373 1.01403 0.78136 0.90311 0.89328 1.22619 0.93215 1.02114 0.97423 1.21151 0.96181 1.04223 0.89817 1.21063 0.95469 0.97266 0.95976 1.20810 0.99392 0.98382 0.91447 1.21328 0.91248 1.01918 1.02270 1.17876 0.86021 1.03635 0.88074 1.91455 1.58526 1.94988 1.68340 1.20760 1.00976 1.01515 0.92809 1.21085 0.93565 0.97745 0.97762 1.77248 0.99232 1.11062 1.35823 1.48612 1.02210 1.07027 1.55730 1.19078 0.94475 0.73213 0.97319 1.21467 1.47146 0.98301 0.91912 0.93768 1.25713 0.94027 0.95945 1.02115 1.70002 1.45316 1.07494 1.32855 0.85347 0.78619 0.78033 0.78693 1.20221 1.19853 1.18922 0.90381 0.91820 0.87154 0.82510 0.76214 0.87156 0.88513 0.87403 0.89411 0.81903 0.82754 0.86293 0.96434 0.93450 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 10.11 71.24 0.72 -2.04 16 2 C 0.09 3.93 6.92 41.39 0.29 4.22 16 3 C -0.33 -12.15 9.56 22.11 0.21 -11.94 16 4 C 0.32 12.58 8.16 133.39 1.09 13.67 16 5 N -0.70 -20.35 5.30 -323.75 -1.71 -22.06 16 6 C 0.20 4.30 3.23 44.92 0.14 4.45 16 7 H 0.09 1.88 7.09 -2.39 -0.02 1.87 16 8 C -0.12 -1.43 6.67 31.51 0.21 -1.22 16 9 C -0.08 -0.88 6.77 30.52 0.21 -0.67 16 10 C -0.10 -1.74 6.14 -19.58 -0.12 -1.86 16 11 C -0.08 -1.35 10.04 22.30 0.22 -1.12 16 12 C -0.15 -2.99 10.03 22.29 0.22 -2.77 16 13 C 0.06 1.68 7.30 22.35 0.16 1.84 16 14 F -0.15 -4.55 17.27 44.97 0.78 -3.78 16 15 C -0.14 -3.90 10.02 22.35 0.22 -3.68 16 16 C -0.10 -2.31 5.77 -19.60 -0.11 -2.42 16 17 N -0.40 -19.54 12.59 -54.54 -0.69 -20.23 16 18 N -0.36 -17.66 3.59 -338.45 -1.22 -18.88 16 19 C 0.28 15.35 5.99 85.64 0.51 15.87 16 20 C -0.55 -32.15 9.39 25.60 0.24 -31.91 16 21 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 22 C 0.02 1.29 5.46 84.66 0.46 1.75 16 23 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 24 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.21 7.07 -2.39 -0.02 2.19 16 30 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.16 4.73 7.09 -2.91 -0.02 4.70 16 32 H 0.40 10.90 8.76 -92.71 -0.81 10.09 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.16 1.51 8.06 -2.92 -0.02 1.48 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.12 3.56 7.45 -2.91 -0.02 3.54 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 2.58 7.04 -2.39 -0.02 2.56 16 42 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -72.72 358.08 4.39 -68.33 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.24 Total: 20.78 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.68 Total: -17.84 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.33 Total: -114.17 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.72 4.39 -68.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.454 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds