Wall clock time and date at job start Tue Mar 31 2020 10:39:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35255 * 126.06722 * 2 1
4 4 C 1.40434 * 107.86362 * 180.02562 * 3 2 1
5 5 N 1.39981 * 125.97687 * 179.97438 * 4 3 2
6 6 C 1.46503 * 120.00067 * 359.97438 * 5 4 3
7 7 H 1.09007 * 110.26724 * 324.37770 * 6 5 4
8 8 C 1.54341 * 110.38397 * 202.25217 * 6 5 4
9 9 C 1.54343 * 102.39331 * 214.67544 * 8 6 5
10 10 C 1.51379 * 105.17057 * 26.35471 * 9 8 6
11 11 C 1.38517 * 130.35980 * 162.80356 * 10 9 8
12 12 C 1.38064 * 120.25126 * 179.70673 * 11 10 9
13 13 C 1.38486 * 119.90496 * 0.54978 * 12 11 10
14 14 F 1.35104 * 120.05776 * 179.74841 * 13 12 11
15 15 C 1.38321 * 119.87988 * 359.47603 * 13 12 11
16 16 C 1.38235 * 109.75327 * 342.80992 * 10 9 8
17 17 N 1.31229 * 108.04232 * 0.23884 * 4 3 2
18 18 N 1.34958 * 126.07225 * 180.02562 * 2 1 3
19 19 C 1.46498 * 125.96973 * 359.94506 * 18 2 1
20 20 C 1.50704 * 109.47134 * 90.00080 * 19 18 2
21 21 H 1.07999 * 119.99844 * 359.97438 * 20 19 18
22 22 C 1.37876 * 119.99778 * 180.02562 * 20 19 18
23 23 N 1.31509 * 120.00667 * 359.97438 * 22 20 19
24 24 Si 1.86804 * 119.99657 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.47221 * 59.99903 * 24 22 20
26 26 H 1.48501 * 109.47134 * 179.97438 * 24 22 20
27 27 H 1.48498 * 109.46966 * 299.99713 * 24 22 20
28 28 H 1.09010 * 109.46952 * 89.97700 * 1 2 3
29 29 H 1.08999 * 109.47042 * 209.97413 * 1 2 3
30 30 H 1.09004 * 109.47467 * 329.97938 * 1 2 3
31 31 H 1.07992 * 126.06969 * 359.97438 * 3 2 1
32 32 H 0.97000 * 119.99948 * 180.02562 * 5 4 3
33 33 H 1.09000 * 110.82506 * 332.89964 * 8 6 5
34 34 H 1.09000 * 110.82374 * 96.25606 * 8 6 5
35 35 H 1.08997 * 110.30696 * 145.27752 * 9 8 6
36 36 H 1.08997 * 110.30468 * 267.43719 * 9 8 6
37 37 H 1.08001 * 119.87757 * 359.97438 * 11 10 9
38 38 H 1.08003 * 120.05032 * 180.27527 * 12 11 10
39 39 H 1.08002 * 119.90400 * 180.23061 * 15 13 12
40 40 H 1.09006 * 109.47346 * 209.99628 * 19 18 2
41 41 H 1.08999 * 109.47385 * 329.99954 * 19 18 2
42 42 H 0.97000 * 120.00483 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3032 1.0933 0.0000
4 6 3.6373 0.6546 -0.0006
5 7 4.7723 1.4738 -0.0013
6 6 4.6238 2.9313 -0.0020
7 1 3.7584 3.2224 -0.5976
8 6 5.9013 3.6016 -0.5506
9 6 5.9834 4.8945 0.2885
10 6 5.2648 4.5738 1.5816
11 6 5.2929 5.2187 2.8072
12 6 4.5387 4.7426 3.8612
13 6 3.7598 3.6095 3.6964
14 9 3.0246 3.1380 4.7272
15 6 3.7315 2.9646 2.4731
16 6 4.4835 3.4457 1.4147
17 7 3.6336 -0.6577 -0.0061
18 7 2.3016 -1.0908 -0.0005
19 6 1.8499 -2.4844 0.0000
20 6 1.6939 -2.9625 -1.4206
21 1 1.9093 -2.2948 -2.2417
22 6 1.2753 -4.2519 -1.6721
23 7 1.0125 -5.0648 -0.6722
24 14 1.0813 -4.8442 -3.4331
25 1 2.3866 -4.7476 -4.1345
26 1 0.6235 -6.2569 -3.4326
27 1 0.0800 -3.9992 -4.1320
28 1 -0.3633 0.0004 -1.0278
29 1 -0.3633 -0.8902 0.5134
30 1 -0.3634 0.8898 0.5142
31 1 1.9720 2.1212 -0.0004
32 1 5.6572 1.0765 -0.0021
33 1 6.7740 2.9717 -0.3781
34 1 5.7941 3.8304 -1.6109
35 1 7.0239 5.1508 0.4876
36 1 5.4836 5.7134 -0.2288
37 1 5.9037 6.0998 2.9376
38 1 4.5597 5.2506 4.8140
39 1 3.1213 2.0831 2.3431
40 1 2.5849 -3.1045 0.5133
41 1 0.8916 -2.5557 0.5146
42 1 0.7184 -5.9720 -0.8492
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000271029449.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:34
Heat of formation + Delta-G solvation = 53.935988 kcal
Electronic energy + Delta-G solvation = -25445.517806 eV
Core-core repulsion = 21727.080850 eV
Total energy + Delta-G solvation = -3718.436956 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-48.89037 -40.59362 -39.98622 -36.38235 -34.31181 -33.15230 -31.63446 -30.89262
-30.48854 -28.77296 -26.91192 -26.47526 -25.58041 -23.13555 -22.84409 -21.25510
-21.14286 -19.65135 -18.89496 -17.30615 -16.67622 -16.60519 -16.29465 -15.61984
-15.57746 -15.25360 -15.09243 -14.58855 -14.36550 -14.12524 -13.67924 -13.50486
-13.25984 -13.08562 -12.54557 -12.45899 -12.30162 -12.19488 -12.02378 -11.85950
-11.68687 -11.51828 -11.36521 -11.12685 -11.04563 -10.99460 -10.76116 -10.27188
-10.03100 -9.58753 -9.22630 -9.04914 -8.60679 -8.56908 -7.76674 -7.04020
-6.20915 -4.29072 1.00888 1.12080 2.88598 3.18584 3.24732 3.28684
3.33314 3.47974 3.71630 4.00334 4.17909 4.25920 4.35042 4.43370
4.73353 4.84846 4.90104 5.00505 5.07964 5.11807 5.40386 5.41737
5.45518 5.56198 5.61982 5.77109 5.78034 5.83522 5.96256 6.04851
6.07428 6.08790 6.11361 6.26767 6.34476 6.43092 6.71196 6.80022
6.87862 7.07820 7.20594 7.70382 7.71520 7.94445 8.12941 8.21019
8.76285 8.91929 9.36920 10.85536
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.020170 B = 0.003123 C = 0.002852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1387.839851 B = 8963.807267 C = 9817.035867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 C 0.108 3.892
3 C -0.337 4.337
4 C 0.311 3.689
5 N -0.718 5.718
6 C 0.211 3.789
7 H 0.096 0.904
8 C -0.124 4.124
9 C -0.077 4.077
10 C -0.108 4.108
11 C -0.085 4.085
12 C -0.154 4.154
13 C 0.093 3.907
14 F -0.140 7.140
15 C -0.118 4.118
16 C -0.079 4.079
17 N -0.346 5.346
18 N -0.324 5.324
19 C 0.260 3.740
20 C -0.534 4.534
21 H 0.063 0.937
22 C 0.065 3.935
23 N -0.893 5.893
24 Si 0.906 3.094
25 H -0.275 1.275
26 H -0.284 1.284
27 H -0.274 1.274
28 H 0.077 0.923
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.128 0.872
32 H 0.399 0.601
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.078 0.922
36 H 0.085 0.915
37 H 0.128 0.872
38 H 0.134 0.866
39 H 0.139 0.861
40 H 0.050 0.950
41 H 0.051 0.949
42 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.783 21.901 4.452 23.356
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.025 4.025
3 C -0.370 4.370
4 C 0.056 3.944
5 N -0.360 5.360
6 C 0.104 3.896
7 H 0.113 0.887
8 C -0.162 4.162
9 C -0.114 4.114
10 C -0.109 4.109
11 C -0.103 4.103
12 C -0.173 4.173
13 C 0.073 3.927
14 F -0.119 7.119
15 C -0.137 4.137
16 C -0.081 4.081
17 N -0.177 5.177
18 N -0.104 5.104
19 C 0.142 3.858
20 C -0.573 4.573
21 H 0.081 0.919
22 C -0.138 4.138
23 N -0.531 5.531
24 Si 0.733 3.267
25 H -0.200 1.200
26 H -0.210 1.210
27 H -0.200 1.200
28 H 0.095 0.905
29 H 0.091 0.909
30 H 0.089 0.911
31 H 0.146 0.854
32 H 0.234 0.766
33 H 0.099 0.901
34 H 0.105 0.895
35 H 0.097 0.903
36 H 0.103 0.897
37 H 0.146 0.854
38 H 0.151 0.849
39 H 0.157 0.843
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 7.231 20.567 4.519 22.264
hybrid contribution -0.472 -0.021 -0.564 0.736
sum 6.759 20.546 3.955 21.988
Atomic orbital electron populations
1.20350 0.88334 1.02731 1.03072 1.20849 0.94484 0.87423 0.99777
1.20424 0.90663 0.98080 1.27856 1.19070 0.87362 0.89617 0.98391
1.43392 1.04609 1.01931 1.86026 1.20206 0.98840 0.80094 0.90470
0.88660 1.22582 0.97388 0.96017 1.00209 1.20990 1.00436 0.98046
0.91913 1.20594 0.98886 0.96323 0.95117 1.20375 0.98915 0.99756
0.91268 1.20997 0.99016 0.96727 1.00543 1.17591 0.94770 0.95291
0.85003 1.91505 1.75182 1.88075 1.57125 1.20767 1.00901 1.01190
0.90866 1.21024 0.95322 0.95262 0.96521 1.77370 0.98890 1.08811
1.32678 1.48902 1.01369 1.07388 1.52760 1.19595 0.95763 0.71706
0.98697 1.21296 1.46571 0.97910 0.91482 0.91881 1.24927 0.94773
0.96109 0.98019 1.69909 1.45025 1.07113 1.31041 0.86427 0.78762
0.77658 0.83892 1.20013 1.20994 1.19982 0.90477 0.90875 0.91067
0.85408 0.76553 0.90072 0.89472 0.90302 0.89714 0.85406 0.84857
0.84293 0.93201 0.93131 0.92256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.44 10.11 36.00 0.36 -1.07 16
2 C 0.11 2.19 6.92 -82.28 -0.57 1.62 16
3 C -0.34 -6.24 8.92 -39.82 -0.36 -6.59 16
4 C 0.31 6.00 7.74 -154.55 -1.20 4.81 16
5 N -0.72 -10.66 5.32 -53.68 -0.29 -10.94 16
6 C 0.21 2.42 3.16 -68.05 -0.22 2.21 16
7 H 0.10 1.12 7.23 -51.93 -0.38 0.74 16
8 C -0.12 -1.00 6.76 -25.32 -0.17 -1.17 16
9 C -0.08 -0.54 6.77 -26.85 -0.18 -0.72 16
10 C -0.11 -1.05 6.14 -104.19 -0.64 -1.69 16
11 C -0.09 -0.77 10.04 -39.54 -0.40 -1.16 16
12 C -0.15 -1.58 10.03 -39.55 -0.40 -1.98 16
13 C 0.09 1.20 7.30 -39.46 -0.29 0.91 16
14 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16
15 C -0.12 -1.63 9.91 -39.47 -0.39 -2.02 16
16 C -0.08 -0.95 5.79 -104.21 -0.60 -1.55 16
17 N -0.35 -8.08 12.59 31.41 0.40 -7.68 16
18 N -0.32 -7.69 3.59 -58.33 -0.21 -7.90 16
19 C 0.26 6.79 5.99 -5.19 -0.03 6.76 16
20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16
21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16
22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16
23 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16
24 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16
25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
28 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16
29 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16
30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
31 H 0.13 2.04 7.47 -52.49 -0.39 1.64 16
32 H 0.40 5.60 8.52 -40.82 -0.35 5.25 16
33 H 0.08 0.64 7.81 -51.93 -0.41 0.23 16
34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16
38 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16
39 H 0.14 2.21 6.73 -52.49 -0.35 1.85 16
40 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16
41 H 0.05 1.31 7.04 -51.93 -0.37 0.94 16
42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 356.30 15.07 5.37 5.37
Total: -1.00 -31.40 356.30 -10.00 -41.40
By element:
Atomic # 1 Polarization: 10.84 SS G_CDS: -5.53 Total: 5.31 kcal
Atomic # 6 Polarization: -9.68 SS G_CDS: -5.49 Total: -15.18 kcal
Atomic # 7 Polarization: -51.86 SS G_CDS: 0.64 Total: -51.23 kcal
Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -31.40 -10.00 -41.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000271029449.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.339 kcal
(2) G-P(sol) polarization free energy of solvation -31.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds