Wall clock time and date at job start Tue Mar 31 2020 10:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35255 * 126.06722 * 2 1 4 4 C 1.40434 * 107.86362 * 180.02562 * 3 2 1 5 5 N 1.39981 * 125.97687 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00067 * 359.97438 * 5 4 3 7 7 H 1.09007 * 110.26724 * 324.37770 * 6 5 4 8 8 C 1.54341 * 110.38397 * 202.25217 * 6 5 4 9 9 C 1.54343 * 102.39331 * 214.67544 * 8 6 5 10 10 C 1.51379 * 105.17057 * 26.35471 * 9 8 6 11 11 C 1.38517 * 130.35980 * 162.80356 * 10 9 8 12 12 C 1.38064 * 120.25126 * 179.70673 * 11 10 9 13 13 C 1.38486 * 119.90496 * 0.54978 * 12 11 10 14 14 F 1.35104 * 120.05776 * 179.74841 * 13 12 11 15 15 C 1.38321 * 119.87988 * 359.47603 * 13 12 11 16 16 C 1.38235 * 109.75327 * 342.80992 * 10 9 8 17 17 N 1.31229 * 108.04232 * 0.23884 * 4 3 2 18 18 N 1.34958 * 126.07225 * 180.02562 * 2 1 3 19 19 C 1.46498 * 125.96973 * 359.94506 * 18 2 1 20 20 C 1.50704 * 109.47134 * 90.00080 * 19 18 2 21 21 H 1.07999 * 119.99844 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99778 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00667 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99657 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47221 * 59.99903 * 24 22 20 26 26 H 1.48501 * 109.47134 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46966 * 299.99713 * 24 22 20 28 28 H 1.09010 * 109.46952 * 89.97700 * 1 2 3 29 29 H 1.08999 * 109.47042 * 209.97413 * 1 2 3 30 30 H 1.09004 * 109.47467 * 329.97938 * 1 2 3 31 31 H 1.07992 * 126.06969 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99948 * 180.02562 * 5 4 3 33 33 H 1.09000 * 110.82506 * 332.89964 * 8 6 5 34 34 H 1.09000 * 110.82374 * 96.25606 * 8 6 5 35 35 H 1.08997 * 110.30696 * 145.27752 * 9 8 6 36 36 H 1.08997 * 110.30468 * 267.43719 * 9 8 6 37 37 H 1.08001 * 119.87757 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.05032 * 180.27527 * 12 11 10 39 39 H 1.08002 * 119.90400 * 180.23061 * 15 13 12 40 40 H 1.09006 * 109.47346 * 209.99628 * 19 18 2 41 41 H 1.08999 * 109.47385 * 329.99954 * 19 18 2 42 42 H 0.97000 * 120.00483 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6373 0.6546 -0.0006 5 7 4.7723 1.4738 -0.0013 6 6 4.6238 2.9313 -0.0020 7 1 3.7584 3.2224 -0.5976 8 6 5.9013 3.6016 -0.5506 9 6 5.9834 4.8945 0.2885 10 6 5.2648 4.5738 1.5816 11 6 5.2929 5.2187 2.8072 12 6 4.5387 4.7426 3.8612 13 6 3.7598 3.6095 3.6964 14 9 3.0246 3.1380 4.7272 15 6 3.7315 2.9646 2.4731 16 6 4.4835 3.4457 1.4147 17 7 3.6336 -0.6577 -0.0061 18 7 2.3016 -1.0908 -0.0005 19 6 1.8499 -2.4844 0.0000 20 6 1.6939 -2.9625 -1.4206 21 1 1.9093 -2.2948 -2.2417 22 6 1.2753 -4.2519 -1.6721 23 7 1.0125 -5.0648 -0.6722 24 14 1.0813 -4.8442 -3.4331 25 1 2.3866 -4.7476 -4.1345 26 1 0.6235 -6.2569 -3.4326 27 1 0.0800 -3.9992 -4.1320 28 1 -0.3633 0.0004 -1.0278 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 1.9720 2.1212 -0.0004 32 1 5.6572 1.0765 -0.0021 33 1 6.7740 2.9717 -0.3781 34 1 5.7941 3.8304 -1.6109 35 1 7.0239 5.1508 0.4876 36 1 5.4836 5.7134 -0.2288 37 1 5.9037 6.0998 2.9376 38 1 4.5597 5.2506 4.8140 39 1 3.1213 2.0831 2.3431 40 1 2.5849 -3.1045 0.5133 41 1 0.8916 -2.5557 0.5146 42 1 0.7184 -5.9720 -0.8492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271029449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:33 Heat of formation + Delta-G solvation = 36.844206 kcal Electronic energy + Delta-G solvation = -25446.258961 eV Core-core repulsion = 21727.080850 eV Total energy + Delta-G solvation = -3719.178111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.90650 -41.98521 -41.02799 -37.38763 -35.81196 -34.81888 -32.93769 -32.48769 -31.70855 -29.60744 -28.49631 -27.92828 -26.85360 -24.79012 -23.91111 -22.20679 -22.01532 -21.10238 -20.39843 -18.79005 -18.24430 -17.70882 -17.48825 -16.89783 -16.65170 -16.39092 -16.25221 -16.05318 -15.88745 -15.42536 -14.76806 -14.59170 -14.37157 -14.33803 -14.07600 -13.73059 -13.60352 -13.36913 -13.31246 -13.16943 -12.89160 -12.78484 -12.64963 -12.52538 -12.42910 -12.20578 -12.08882 -11.83729 -11.70228 -11.20881 -10.83600 -10.73588 -9.92526 -9.39750 -9.37958 -8.61087 -8.25746 -6.50370 0.15960 0.26140 1.25177 1.37543 1.39400 1.48344 1.74203 2.21330 2.33388 2.56417 2.83300 2.96884 3.16993 3.50683 3.64150 3.89615 3.99791 4.05510 4.19062 4.21975 4.30260 4.33435 4.47504 4.65437 4.71399 4.74062 4.82736 4.84246 4.90074 4.96148 4.98702 5.08304 5.10071 5.19256 5.22764 5.23923 5.29910 5.38965 5.53515 5.58695 5.63367 5.83202 5.95486 6.34477 6.40577 6.65282 6.79154 7.20808 7.35782 8.73707 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.003123 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.839851 B = 8963.807267 C = 9817.035867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.095 3.905 3 C -0.328 4.328 4 C 0.321 3.679 5 N -0.709 5.709 6 C 0.203 3.797 7 H 0.094 0.906 8 C -0.117 4.117 9 C -0.069 4.069 10 C -0.099 4.099 11 C -0.077 4.077 12 C -0.148 4.148 13 C 0.064 3.936 14 F -0.156 7.156 15 C -0.142 4.142 16 C -0.097 4.097 17 N -0.402 5.402 18 N -0.355 5.355 19 C 0.279 3.721 20 C -0.551 4.551 21 H 0.050 0.950 22 C 0.019 3.981 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.263 1.263 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.402 0.598 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.014 0.986 41 H 0.045 0.955 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 25.327 3.149 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.361 4.361 4 C 0.064 3.936 5 N -0.351 5.351 6 C 0.098 3.902 7 H 0.112 0.888 8 C -0.155 4.155 9 C -0.106 4.106 10 C -0.100 4.100 11 C -0.095 4.095 12 C -0.167 4.167 13 C 0.045 3.955 14 F -0.135 7.135 15 C -0.161 4.161 16 C -0.099 4.099 17 N -0.234 5.234 18 N -0.135 5.135 19 C 0.159 3.841 20 C -0.589 4.589 21 H 0.068 0.932 22 C -0.181 4.181 23 N -0.560 5.560 24 Si 0.797 3.203 25 H -0.201 1.201 26 H -0.198 1.198 27 H -0.187 1.187 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.173 0.827 32 H 0.238 0.762 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.123 0.877 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.383 24.047 3.225 25.670 hybrid contribution -0.746 -0.932 -0.082 1.196 sum 7.637 23.115 3.143 24.546 Atomic orbital electron populations 1.20462 0.85991 1.03892 1.03803 1.21588 0.96207 0.86887 0.98920 1.20700 0.90096 0.98795 1.26473 1.19441 0.89177 0.88965 0.96003 1.43699 1.03433 1.03124 1.84799 1.20579 1.01001 0.77897 0.90736 0.88839 1.22628 0.95278 0.96211 1.01370 1.21077 1.01746 0.97757 0.89979 1.20998 0.97560 0.94868 0.96544 1.20821 0.98098 1.00340 0.90206 1.21325 0.97831 0.95388 1.02118 1.17899 0.96238 0.96851 0.84552 1.91455 1.75839 1.88519 1.57699 1.20641 1.02072 1.00969 0.92418 1.21075 0.96082 0.96647 0.96102 1.77254 0.99228 1.11097 1.35849 1.48608 1.02198 1.07013 1.55719 1.19071 0.94270 0.73186 0.97548 1.21433 1.47283 0.98395 0.91819 0.93181 1.25795 0.93974 0.95940 1.02416 1.70008 1.45231 1.07535 1.33196 0.85381 0.78772 0.77669 0.78509 1.20083 1.19777 1.18741 0.89807 0.92047 0.87521 0.82681 0.76240 0.89764 0.87682 0.87836 0.87510 0.81497 0.82605 0.87660 0.96752 0.93721 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.23 0.72 -2.07 16 2 C 0.10 3.98 6.92 41.39 0.29 4.27 16 3 C -0.33 -12.27 8.92 22.12 0.20 -12.07 16 4 C 0.32 12.73 7.74 133.39 1.03 13.76 16 5 N -0.71 -21.00 5.32 -323.76 -1.72 -22.72 16 6 C 0.20 4.34 3.16 44.91 0.14 4.49 16 7 H 0.09 2.03 7.23 -2.38 -0.02 2.01 16 8 C -0.12 -1.48 6.76 31.51 0.21 -1.27 16 9 C -0.07 -0.63 6.77 30.52 0.21 -0.42 16 10 C -0.10 -1.57 6.14 -19.58 -0.12 -1.69 16 11 C -0.08 -1.08 10.04 22.29 0.22 -0.85 16 12 C -0.15 -2.71 10.03 22.29 0.22 -2.49 16 13 C 0.06 1.66 7.30 22.35 0.16 1.82 16 14 F -0.16 -4.61 17.27 44.97 0.78 -3.83 16 15 C -0.14 -4.00 9.91 22.34 0.22 -3.78 16 16 C -0.10 -2.20 5.79 -19.60 -0.11 -2.31 16 17 N -0.40 -19.75 12.59 -54.54 -0.69 -20.44 16 18 N -0.35 -17.79 3.59 -338.44 -1.22 -19.00 16 19 C 0.28 15.50 5.99 85.63 0.51 16.02 16 20 C -0.55 -31.97 9.39 25.60 0.24 -31.73 16 21 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 22 C 0.02 1.09 5.46 84.66 0.46 1.55 16 23 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 24 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 28 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.06 2.18 7.07 -2.39 -0.02 2.17 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.16 4.81 7.47 -2.91 -0.02 4.79 16 32 H 0.40 11.29 8.52 -92.71 -0.79 10.50 16 33 H 0.08 1.05 7.81 -2.39 -0.02 1.04 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.11 3.60 6.73 -2.91 -0.02 3.58 16 40 H 0.01 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.05 2.47 7.04 -2.39 -0.02 2.46 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.95 356.30 4.34 -68.62 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.26 Total: 21.71 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.61 Total: -16.79 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.34 Total: -115.71 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.78 Total: -3.83 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.95 4.34 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.461 kcal (2) G-P(sol) polarization free energy of solvation -72.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds