Wall clock time and date at job start Tue Mar 31 2020 10:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46732 * 2 1 4 4 N 1.32605 * 120.41268 * 90.00138 * 3 2 1 5 5 C 1.31724 * 121.02547 * 179.97438 * 4 3 2 6 6 N 1.31803 * 121.88172 * 0.02562 * 5 4 3 7 7 C 1.32905 * 120.71134 * 359.97438 * 6 5 4 8 8 N 1.38674 * 120.54174 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00157 * 359.97438 * 8 7 6 10 10 H 1.08994 * 109.46885 * 35.00593 * 9 8 7 11 11 C 1.53008 * 109.46869 * 155.00357 * 9 8 7 12 12 C 1.50694 * 109.47032 * 295.00141 * 11 9 8 13 13 H 1.08000 * 120.00575 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00024 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99703 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00223 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47166 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47120 * 119.99369 * 16 14 12 19 19 H 1.48494 * 109.47324 * 239.99803 * 16 14 12 20 20 C 1.50700 * 109.47122 * 275.00107 * 9 8 7 21 21 C 1.38228 * 120.00369 * 319.72664 * 20 9 8 22 22 C 1.38239 * 120.00189 * 179.78130 * 21 20 9 23 23 C 1.38241 * 119.99592 * 0.45133 * 22 21 20 24 24 C 1.38230 * 119.99848 * 359.80422 * 23 22 21 25 25 C 1.38230 * 120.00309 * 359.97438 * 24 23 22 26 26 C 1.38235 * 120.41495 * 269.97416 * 3 2 1 27 27 F 1.35103 * 120.85234 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47475 * 60.00283 * 1 2 3 29 29 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47511 * 299.99782 * 1 2 3 31 31 H 1.09002 * 109.47361 * 240.00509 * 2 1 3 32 32 H 1.08999 * 109.47475 * 119.99717 * 2 1 3 33 33 H 1.07996 * 119.05487 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99874 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.47071 * 55.00180 * 11 9 8 36 36 H 1.09005 * 109.46842 * 175.00056 * 11 9 8 37 37 H 0.96999 * 120.00120 * 180.02562 * 15 14 12 38 38 H 1.08004 * 119.99928 * 0.02562 * 21 20 9 39 39 H 1.08002 * 120.00083 * 180.27033 * 22 21 20 40 40 H 1.07997 * 119.99563 * 179.83015 * 23 22 21 41 41 H 1.07999 * 119.99642 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.00128 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2560 2.0538 1.1436 5 6 2.6954 3.2955 1.1577 6 7 2.9314 3.9631 0.0460 7 6 2.7317 3.3982 -1.1404 8 7 2.9817 4.1037 -2.3078 9 6 3.4694 5.4834 -2.2397 10 1 4.1327 5.5924 -1.3818 11 6 4.2347 5.8176 -3.5218 12 6 5.4717 4.9612 -3.6061 13 1 5.6901 4.2493 -2.8239 14 6 6.3248 5.0863 -4.6821 15 7 6.0586 5.9527 -5.6350 16 14 7.8578 4.0241 -4.7870 17 1 7.9275 3.1368 -3.5983 18 1 7.8040 3.1977 -6.0197 19 1 9.0608 4.8938 -4.8261 20 6 2.3002 6.4229 -2.0933 21 6 1.1395 6.1989 -2.8098 22 6 0.0654 7.0581 -2.6720 23 6 0.1554 8.1467 -1.8247 24 6 1.3180 8.3736 -1.1122 25 6 2.3904 7.5118 -1.2465 26 6 2.2660 2.0805 -1.1921 27 9 2.0495 1.4682 -2.3768 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8672 3.7803 2.1073 34 1 2.8328 3.6838 -3.1695 35 1 3.5987 5.6235 -4.3856 36 1 4.5209 6.8694 -3.5104 37 1 6.6586 6.0405 -6.3921 38 1 1.0704 5.3503 -3.4743 39 1 -0.8430 6.8806 -3.2286 40 1 -0.6828 8.8195 -1.7192 41 1 1.3881 9.2238 -0.4499 42 1 3.2986 7.6890 -0.6895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271112294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:51 Heat of formation + Delta-G solvation = 14.420978 kcal Electronic energy + Delta-G solvation = -25997.063121 eV Core-core repulsion = 22276.912666 eV Total energy + Delta-G solvation = -3720.150455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.66252 -40.64676 -39.08657 -36.60853 -34.69562 -33.22743 -32.10824 -31.00345 -30.53467 -29.57986 -28.53458 -25.35478 -24.39457 -23.71948 -22.30096 -22.02713 -21.50945 -20.07306 -18.11594 -17.46785 -17.08252 -16.77382 -16.19592 -15.90161 -15.11578 -14.97403 -14.82868 -14.53836 -14.13144 -13.98484 -13.79741 -13.64870 -13.24233 -13.09084 -12.95033 -12.64911 -12.56245 -12.16043 -11.71952 -11.57173 -11.35445 -11.29249 -11.17771 -11.00232 -10.91267 -10.77817 -10.55059 -10.39252 -9.80866 -9.45009 -9.25542 -8.93112 -8.58006 -8.50635 -8.25099 -7.70144 -6.13732 -4.17550 1.05244 1.46796 1.72225 1.75393 3.23623 3.32211 3.35653 3.36508 3.94603 4.10808 4.16625 4.21591 4.36238 4.49819 4.85630 4.97457 5.18915 5.21475 5.22166 5.23219 5.29553 5.32463 5.47167 5.52926 5.73941 5.75950 5.85316 5.89030 5.95644 6.04022 6.07442 6.28376 6.34823 6.48958 6.52515 6.79664 6.80494 6.96548 7.00873 7.24893 7.35438 7.42103 7.65188 7.81292 7.89122 8.19151 8.45491 8.88095 9.48076 10.96757 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008476 B = 0.005680 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.612511 B = 4928.161657 C = 7200.249110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C 0.176 3.824 4 N -0.555 5.555 5 C 0.332 3.668 6 N -0.556 5.556 7 C 0.433 3.567 8 N -0.667 5.667 9 C 0.191 3.809 10 H 0.094 0.906 11 C 0.022 3.978 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.071 4.071 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.104 4.104 26 C -0.084 4.084 27 F -0.129 7.129 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.416 0.584 35 H 0.024 0.976 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 -4.248 10.267 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C 0.034 3.966 4 N -0.275 5.275 5 C 0.042 3.958 6 N -0.281 5.281 7 C 0.185 3.815 8 N -0.295 5.295 9 C 0.086 3.914 10 H 0.112 0.888 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.073 4.073 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.123 4.123 26 C -0.114 4.114 27 F -0.108 7.108 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.213 0.787 34 H 0.254 0.746 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.417 -3.553 10.850 16.146 hybrid contribution 0.725 -1.015 -1.578 2.011 sum -10.692 -4.568 9.272 14.871 Atomic orbital electron populations 1.21662 0.93687 1.02194 1.02420 1.20462 0.96838 0.89901 1.04062 1.21420 0.91796 0.96751 0.86664 1.68244 1.19923 1.11293 1.28062 1.24620 0.88487 0.86656 0.96022 1.68094 1.24712 1.38456 0.96813 1.18803 0.87543 0.86485 0.88670 1.44897 1.66200 1.14202 1.04158 1.20381 0.90969 0.76665 1.03335 0.88836 1.19428 0.94493 0.98239 0.89389 1.21135 1.06846 1.21328 1.06655 0.92444 1.24977 0.98043 0.95378 0.95642 1.69960 1.37607 1.35030 1.10317 0.86540 0.83104 0.80408 0.78023 1.19787 1.20948 1.20892 1.20520 0.95661 0.96134 0.94958 1.20917 0.93202 0.99381 0.99191 1.21042 0.98456 0.95542 0.99242 1.21002 0.97931 0.98084 0.98179 1.21042 0.93696 0.99376 0.99985 1.20988 0.98560 0.94593 0.98156 1.18541 1.16223 0.93453 0.83232 1.91448 1.93402 1.82372 1.43597 0.92551 0.91724 0.92131 0.89807 0.89281 0.78737 0.74622 0.95753 0.94403 0.92851 0.86791 0.86785 0.86841 0.86570 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.02 16 2 C -0.07 -0.84 6.11 -27.88 -0.17 -1.01 16 3 C 0.18 2.57 6.07 -82.26 -0.50 2.07 16 4 N -0.55 -8.12 10.37 -10.84 -0.11 -8.24 16 5 C 0.33 4.76 12.28 -92.21 -1.13 3.63 16 6 N -0.56 -9.35 9.35 -13.74 -0.13 -9.48 16 7 C 0.43 7.62 7.49 -154.64 -1.16 6.46 16 8 N -0.67 -12.27 4.18 -54.83 -0.23 -12.50 16 9 C 0.19 3.73 2.14 -69.08 -0.15 3.58 16 10 H 0.09 1.93 7.43 -51.93 -0.39 1.55 16 11 C 0.02 0.52 4.49 -27.88 -0.13 0.39 16 12 C -0.52 -13.75 8.84 -34.44 -0.30 -14.05 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.07 -1.27 4.93 -104.63 -0.52 -1.78 16 21 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 22 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 25 C -0.10 -1.70 9.67 -39.58 -0.38 -2.08 16 26 C -0.08 -1.36 7.32 -38.98 -0.29 -1.65 16 27 F -0.13 -2.07 16.07 2.25 0.04 -2.03 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.42 7.61 8.18 -40.82 -0.33 7.27 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.11 1.87 7.73 -52.48 -0.41 1.46 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.85 8.04 -52.48 -0.42 1.43 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -29.57 364.50 -10.96 -40.52 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.72 Total: 7.52 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -6.01 Total: -12.67 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.27 Total: -54.97 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.57 -10.96 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271112294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.943 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds