Wall clock time and date at job start Tue Mar 31 2020 10:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40084 * 125.97424 * 180.13292 * 4 3 2 6 6 C 1.34778 * 120.00185 * 0.26845 * 5 4 3 7 7 O 1.21583 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.47690 * 119.99939 * 179.97438 * 6 5 4 9 9 C 1.41510 * 126.51601 * 180.02562 * 8 6 5 10 10 C 1.35364 * 105.50150 * 179.97438 * 9 8 6 11 11 C 1.50703 * 126.38986 * 179.97438 * 10 9 8 12 12 C 1.52994 * 117.50263 * 213.74965 * 11 10 9 13 13 C 1.52999 * 117.49905 * 145.08364 * 11 10 9 14 14 N 1.35046 * 107.22922 * 0.02562 * 10 9 8 15 15 H 0.96997 * 124.88119 * 180.02562 * 14 10 9 16 16 N 1.28468 * 110.23186 * 359.76138 * 14 10 9 17 17 N 1.31229 * 108.04425 * 0.38299 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97360 * 359.94234 * 18 2 1 20 20 C 1.50702 * 109.47377 * 90.00230 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48487 * 109.47238 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.46861 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46774 * 299.99829 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08003 * 126.06492 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99813 * 180.26889 * 5 4 3 33 33 H 1.07992 * 127.25138 * 359.94138 * 9 8 6 34 34 H 1.09001 * 115.54034 * 359.42062 * 11 10 9 35 35 H 1.08998 * 117.49755 * 359.97438 * 12 11 10 36 36 H 1.08996 * 117.49720 * 145.01850 * 12 11 10 37 37 H 1.08997 * 117.49750 * 214.98406 * 13 11 10 38 38 H 1.08993 * 117.49774 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.47250 * 209.99659 * 19 18 2 40 40 H 1.08999 * 109.47203 * 329.99983 * 19 18 2 41 41 H 0.97005 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7730 1.4744 0.0062 6 6 4.6363 2.8152 0.0127 7 8 3.5271 3.3131 0.0160 8 6 5.8338 3.6796 0.0170 9 6 5.8509 5.0946 0.0244 10 6 7.1596 5.4405 0.0265 11 6 7.7139 6.8419 0.0334 12 6 9.0233 7.0875 -0.7189 13 6 9.0083 7.0858 0.8118 14 7 7.8760 4.2958 0.0201 15 1 8.8448 4.2476 0.0203 16 7 7.0898 3.2797 0.0193 17 7 3.6336 -0.6578 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0123 20 6 1.6939 -2.9556 -1.4353 21 1 1.9093 -2.2839 -2.2531 22 6 1.2762 -4.2441 -1.6930 23 7 1.0145 -5.0621 -0.6972 24 14 1.0822 -4.8277 -3.4569 25 1 2.3871 -4.7265 -4.1582 26 1 0.6244 -6.2404 -3.4633 27 1 0.0800 -3.9799 -4.1513 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9718 2.1210 -0.0004 32 1 5.6580 1.0771 0.0039 33 1 4.9993 5.7586 0.0271 34 1 6.9723 7.6407 0.0270 35 1 9.4841 6.2353 -1.2185 36 1 9.1434 8.0480 -1.2199 37 1 9.1185 8.0452 1.3172 38 1 9.4587 6.2328 1.3193 39 1 2.5849 -3.1071 0.4979 40 1 0.8917 -2.5583 0.5020 41 1 0.7202 -5.9685 -0.8786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271138690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:55 Heat of formation + Delta-G solvation = 141.594177 kcal Electronic energy + Delta-G solvation = -24557.842939 eV Core-core repulsion = 20863.127089 eV Total energy + Delta-G solvation = -3694.715850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03738 -40.62954 -39.02431 -37.68406 -34.80386 -33.36369 -32.20239 -31.42625 -30.94316 -30.56229 -26.79166 -26.29732 -24.76499 -23.80147 -23.02113 -22.67572 -21.42284 -20.71673 -19.70366 -18.90018 -18.06726 -16.74725 -16.60652 -16.21698 -16.04451 -15.89362 -15.24832 -14.80878 -14.61235 -14.33390 -14.04861 -13.87472 -13.70530 -12.99064 -12.64143 -12.44075 -12.28728 -12.23791 -12.11873 -11.65982 -11.62275 -11.37909 -11.27766 -11.07526 -10.98850 -10.79850 -10.43251 -10.21804 -9.99565 -9.66620 -9.65066 -9.49608 -9.11980 -8.61363 -7.88910 -7.41033 -6.22609 -4.30230 1.29971 1.70322 2.44707 2.75678 2.85736 3.20851 3.25813 3.29282 3.33972 3.34902 3.78109 3.87368 3.96742 4.15236 4.25281 4.32480 4.34274 4.56468 4.97622 4.99107 5.10843 5.22138 5.33128 5.35133 5.42642 5.50695 5.62685 5.77012 5.99401 6.08146 6.14321 6.28181 6.51448 6.55189 6.63900 6.78959 6.96888 7.08966 7.46083 7.52075 7.69921 7.75446 7.92119 8.09470 8.28468 8.69249 8.78451 9.35937 10.84530 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.002299 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.822750 B =12175.760895 C =12646.108600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.264 3.736 5 N -0.618 5.618 6 C 0.610 3.390 7 O -0.507 6.507 8 C -0.001 4.001 9 C -0.164 4.164 10 C 0.044 3.956 11 C -0.086 4.086 12 C -0.174 4.174 13 C -0.174 4.174 14 N -0.379 5.379 15 H 0.443 0.557 16 N -0.253 5.253 17 N -0.318 5.318 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.575 23.699 2.815 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.011 3.989 5 N -0.265 5.265 6 C 0.393 3.607 7 O -0.378 6.378 8 C -0.162 4.162 9 C -0.192 4.192 10 C -0.081 4.081 11 C -0.106 4.106 12 C -0.212 4.212 13 C -0.211 4.211 14 N -0.094 5.094 15 H 0.287 0.713 16 N -0.089 5.089 17 N -0.149 5.149 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.252 0.748 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.980 21.706 2.863 25.977 hybrid contribution 0.116 0.625 -0.951 1.144 sum 14.096 22.331 1.912 26.477 Atomic orbital electron populations 1.20379 0.87871 1.03881 1.02537 1.21064 0.94929 0.87111 1.00895 1.21261 0.89655 0.99859 1.21244 1.18931 0.87039 0.89597 1.03286 1.42233 1.08023 1.04657 1.71543 1.16703 0.86754 0.80499 0.76723 1.90746 1.24603 1.73992 1.48466 1.21740 0.90665 0.93737 1.10075 1.21433 0.95983 0.93745 1.08051 1.20451 0.91576 0.88516 1.07559 1.20531 0.91923 0.91705 1.06404 1.23117 0.99329 1.04084 0.94628 1.23118 0.99562 1.04077 0.94387 1.43201 1.09766 1.02578 1.53819 0.71291 1.73617 1.01600 1.14728 1.18959 1.77276 0.99910 1.08446 1.29222 1.49006 1.00948 1.07801 1.52113 1.19687 0.95989 0.71342 0.98903 1.21295 1.46833 0.97966 0.91382 0.91772 1.24927 0.94707 0.96038 0.98121 1.69911 1.44892 1.06993 1.31175 0.86411 0.78811 0.77625 0.83815 1.20000 1.20986 1.19918 0.91070 0.89913 0.90582 0.82236 0.74787 0.81601 0.84754 0.88751 0.87470 0.87485 0.88743 0.92981 0.92752 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -6.15 9.52 -39.83 -0.38 -6.53 16 4 C 0.26 5.67 8.11 -154.45 -1.25 4.42 16 5 N -0.62 -10.89 5.44 -12.03 -0.07 -10.95 16 6 C 0.61 10.14 7.79 -12.40 -0.10 10.04 16 7 O -0.51 -9.50 14.05 5.29 0.07 -9.42 16 8 C 0.00 -0.01 7.13 -82.77 -0.59 -0.60 16 9 C -0.16 -1.79 10.73 -39.36 -0.42 -2.22 16 10 C 0.04 0.36 6.64 -82.20 -0.55 -0.18 16 11 C -0.09 -0.44 6.26 -91.77 -0.57 -1.01 16 12 C -0.17 -0.63 10.22 -26.69 -0.27 -0.91 16 13 C -0.17 -0.63 10.23 -26.69 -0.27 -0.90 16 14 N -0.38 -3.11 6.80 33.50 0.23 -2.89 16 15 H 0.44 2.12 8.96 -190.44 -1.71 0.41 16 16 N -0.25 -2.97 11.92 33.42 0.40 -2.57 16 17 N -0.32 -7.64 12.59 31.43 0.40 -7.24 16 18 N -0.32 -7.69 3.59 -58.33 -0.21 -7.90 16 19 C 0.26 6.74 5.81 -5.20 -0.03 6.71 16 20 C -0.54 -14.96 9.39 -34.44 -0.32 -15.29 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 24 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 32 H 0.42 6.51 8.55 -40.82 -0.35 6.16 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.39 7.65 -51.93 -0.40 1.00 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -33.68 360.73 -9.61 -43.29 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.51 Total: 5.01 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -5.07 Total: -4.54 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 1.48 Total: -56.10 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.68 -9.61 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271138690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.882 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds