Wall clock time and date at job start Tue Mar 31 2020 10:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40084 * 125.97424 * 180.13292 * 4 3 2 6 6 C 1.34778 * 120.00185 * 0.26845 * 5 4 3 7 7 O 1.21583 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.47690 * 119.99939 * 179.97438 * 6 5 4 9 9 C 1.41510 * 126.51601 * 180.02562 * 8 6 5 10 10 C 1.35364 * 105.50150 * 179.97438 * 9 8 6 11 11 C 1.50703 * 126.38986 * 179.97438 * 10 9 8 12 12 C 1.52994 * 117.50263 * 213.74965 * 11 10 9 13 13 C 1.52999 * 117.49905 * 145.08364 * 11 10 9 14 14 N 1.35046 * 107.22922 * 0.02562 * 10 9 8 15 15 H 0.96997 * 124.88119 * 180.02562 * 14 10 9 16 16 N 1.28468 * 110.23186 * 359.76138 * 14 10 9 17 17 N 1.31229 * 108.04425 * 0.38299 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97360 * 359.94234 * 18 2 1 20 20 C 1.50702 * 109.47377 * 90.00230 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48487 * 109.47238 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.46861 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46774 * 299.99829 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08003 * 126.06492 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99813 * 180.26889 * 5 4 3 33 33 H 1.07992 * 127.25138 * 359.94138 * 9 8 6 34 34 H 1.09001 * 115.54034 * 359.42062 * 11 10 9 35 35 H 1.08998 * 117.49755 * 359.97438 * 12 11 10 36 36 H 1.08996 * 117.49720 * 145.01850 * 12 11 10 37 37 H 1.08997 * 117.49750 * 214.98406 * 13 11 10 38 38 H 1.08993 * 117.49774 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.47250 * 209.99659 * 19 18 2 40 40 H 1.08999 * 109.47203 * 329.99983 * 19 18 2 41 41 H 0.97005 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7730 1.4744 0.0062 6 6 4.6363 2.8152 0.0127 7 8 3.5271 3.3131 0.0160 8 6 5.8338 3.6796 0.0170 9 6 5.8509 5.0946 0.0244 10 6 7.1596 5.4405 0.0265 11 6 7.7139 6.8419 0.0334 12 6 9.0233 7.0875 -0.7189 13 6 9.0083 7.0858 0.8118 14 7 7.8760 4.2958 0.0201 15 1 8.8448 4.2476 0.0203 16 7 7.0898 3.2797 0.0193 17 7 3.6336 -0.6578 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0123 20 6 1.6939 -2.9556 -1.4353 21 1 1.9093 -2.2839 -2.2531 22 6 1.2762 -4.2441 -1.6930 23 7 1.0145 -5.0621 -0.6972 24 14 1.0822 -4.8277 -3.4569 25 1 2.3871 -4.7265 -4.1582 26 1 0.6244 -6.2404 -3.4633 27 1 0.0800 -3.9799 -4.1513 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9718 2.1210 -0.0004 32 1 5.6580 1.0771 0.0039 33 1 4.9993 5.7586 0.0271 34 1 6.9723 7.6407 0.0270 35 1 9.4841 6.2353 -1.2185 36 1 9.1434 8.0480 -1.2199 37 1 9.1185 8.0452 1.3172 38 1 9.4587 6.2328 1.3193 39 1 2.5849 -3.1071 0.4979 40 1 0.8917 -2.5583 0.5020 41 1 0.7202 -5.9685 -0.8786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271138690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:55 Heat of formation + Delta-G solvation = 119.864336 kcal Electronic energy + Delta-G solvation = -24558.785215 eV Core-core repulsion = 20863.127089 eV Total energy + Delta-G solvation = -3695.658126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.86105 -42.30119 -40.44770 -38.07309 -36.39911 -35.32779 -33.37189 -32.81456 -32.55456 -31.56759 -28.69727 -27.88092 -26.10077 -24.76113 -24.20263 -23.26455 -22.25472 -22.01397 -21.28667 -20.36691 -18.80478 -18.74206 -17.81110 -17.68435 -17.10780 -17.03022 -16.41479 -16.34254 -16.10039 -15.51733 -15.44102 -15.07709 -14.70223 -14.37946 -14.31682 -13.81545 -13.63429 -13.58757 -13.17711 -13.14047 -12.84398 -12.67628 -12.45733 -12.25294 -12.14875 -12.06169 -12.04346 -11.62152 -11.38836 -11.38220 -11.19787 -10.73300 -10.54879 -9.80849 -9.61005 -9.16754 -8.32711 -6.50303 0.23663 0.89863 1.11451 1.25865 1.38419 1.40073 1.49397 1.79397 1.82398 2.27260 2.38660 2.40963 2.96953 3.01017 3.17942 3.41131 3.75832 3.81439 4.04126 4.06878 4.13615 4.17441 4.47068 4.53489 4.73081 4.76986 4.77121 4.79188 4.86397 4.97564 4.98086 5.02507 5.11724 5.16111 5.20697 5.22809 5.26266 5.53511 5.80835 5.87804 5.96207 6.18337 6.25562 6.61419 6.69921 6.92771 7.01304 7.20406 8.73214 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.002299 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.822750 B =12175.760895 C =12646.108600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.271 3.729 5 N -0.615 5.615 6 C 0.612 3.388 7 O -0.531 6.531 8 C -0.027 4.027 9 C -0.183 4.183 10 C 0.067 3.933 11 C -0.103 4.103 12 C -0.166 4.166 13 C -0.165 4.165 14 N -0.360 5.360 15 H 0.459 0.541 16 N -0.265 5.265 17 N -0.357 5.357 18 N -0.340 5.340 19 C 0.275 3.725 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.265 1.265 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.424 0.576 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.055 0.945 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.603 25.825 2.117 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.017 3.983 5 N -0.264 5.264 6 C 0.398 3.602 7 O -0.404 6.404 8 C -0.186 4.186 9 C -0.211 4.211 10 C -0.059 4.059 11 C -0.123 4.123 12 C -0.204 4.204 13 C -0.203 4.203 14 N -0.077 5.077 15 H 0.307 0.693 16 N -0.103 5.103 17 N -0.188 5.188 18 N -0.123 5.123 19 C 0.156 3.844 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.202 1.202 26 H -0.197 1.197 27 H -0.189 1.189 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.187 0.813 32 H 0.261 0.739 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.037 23.851 2.175 28.279 hybrid contribution -0.061 0.128 -0.683 0.697 sum 14.976 23.979 1.492 28.311 Atomic orbital electron populations 1.20520 0.85029 1.04520 1.04247 1.21782 0.96789 0.86260 0.99201 1.21456 0.89600 1.00158 1.21595 1.19253 0.88499 0.89271 1.01231 1.42358 1.07356 1.04866 1.71781 1.17164 0.87664 0.80032 0.75354 1.90704 1.25955 1.74255 1.49465 1.21343 0.90146 0.94175 1.12974 1.21617 0.97567 0.92674 1.09226 1.20812 0.90650 0.89707 1.04740 1.20681 0.93065 0.89829 1.08738 1.23230 0.97374 1.04875 0.94872 1.23229 0.97563 1.04885 0.94582 1.43278 1.10457 1.02053 1.51934 0.69301 1.73544 1.01310 1.15982 1.19416 1.77193 1.00272 1.09849 1.31492 1.48823 1.01598 1.07644 1.54222 1.19272 0.94981 0.72295 0.97843 1.21404 1.47691 0.98421 0.91730 0.93271 1.25735 0.93945 0.95851 1.02302 1.69994 1.44959 1.07414 1.33142 0.85412 0.78712 0.77717 0.78685 1.20210 1.19653 1.18929 0.88719 0.91327 0.87759 0.81261 0.73873 0.81041 0.83646 0.88450 0.86212 0.86196 0.88430 0.95772 0.92754 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.19 16 2 C 0.09 3.93 6.92 41.38 0.29 4.22 16 3 C -0.30 -12.76 9.52 22.11 0.21 -12.55 16 4 C 0.27 11.94 8.11 133.35 1.08 13.02 16 5 N -0.62 -22.18 5.44 -310.25 -1.69 -23.86 16 6 C 0.61 20.61 7.79 86.74 0.68 21.29 16 7 O -0.53 -20.10 14.05 -3.98 -0.06 -20.15 16 8 C -0.03 -0.72 7.13 42.45 0.30 -0.42 16 9 C -0.18 -3.83 10.73 22.41 0.24 -3.59 16 10 C 0.07 0.97 6.64 41.40 0.28 1.25 16 11 C -0.10 -0.77 6.26 -11.54 -0.07 -0.84 16 12 C -0.17 -0.67 10.22 30.62 0.31 -0.35 16 13 C -0.17 -0.65 10.23 30.62 0.31 -0.34 16 14 N -0.36 -5.24 6.80 -47.92 -0.33 -5.57 16 15 H 0.46 3.27 8.96 -220.00 -1.97 1.30 16 16 N -0.26 -6.00 11.92 -48.18 -0.57 -6.58 16 17 N -0.36 -17.81 12.59 -54.48 -0.69 -18.49 16 18 N -0.34 -17.10 3.59 -338.46 -1.22 -18.32 16 19 C 0.27 14.89 5.81 85.63 0.50 15.39 16 20 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.27 5.46 84.66 0.46 1.73 16 23 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 24 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.07 2.54 7.71 -2.39 -0.02 2.53 16 30 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 31 H 0.17 6.91 5.91 -2.91 -0.02 6.89 16 32 H 0.42 13.62 8.55 -92.71 -0.79 12.83 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.12 0.21 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 2.89 7.65 -2.39 -0.02 2.87 16 41 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -74.03 360.73 1.62 -72.41 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.67 Total: 21.81 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.53 Total: 5.15 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -4.21 Total: -124.97 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -74.03 1.62 -72.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271138690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.270 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds