Wall clock time and date at job start Tue Mar 31 2020 10:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35238 * 126.06691 * 2 1 4 4 C 1.40419 * 107.86627 * 179.84360 * 3 2 1 5 5 N 1.40090 * 125.97891 * 180.18284 * 4 3 2 6 6 C 1.34771 * 119.99547 * 0.30263 * 5 4 3 7 7 O 1.21576 * 120.00504 * 359.97438 * 6 5 4 8 8 C 1.47805 * 120.00023 * 179.97438 * 6 5 4 9 9 C 1.39981 * 120.94126 * 353.91909 * 8 6 5 10 10 N 1.32131 * 118.92187 * 179.74340 * 9 8 6 11 11 C 1.31878 * 120.96686 * 0.56827 * 10 9 8 12 12 C 1.50701 * 118.94792 * 179.70536 * 11 10 9 13 13 N 1.31851 * 122.10083 * 359.68248 * 11 10 9 14 14 C 1.32160 * 120.96802 * 0.02562 * 13 11 10 15 15 C 1.50708 * 120.53701 * 180.02562 * 14 13 11 16 16 N 1.31236 * 108.04938 * 0.42247 * 4 3 2 17 17 N 1.34963 * 126.06713 * 180.30426 * 2 1 3 18 18 C 1.46505 * 125.97752 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.47022 * 89.99691 * 18 17 2 20 20 H 1.07998 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00182 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46998 * 59.99378 * 23 21 19 25 25 H 1.48500 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47111 * 299.99783 * 23 21 19 27 27 H 1.09004 * 109.46958 * 269.69224 * 1 2 3 28 28 H 1.09000 * 109.47109 * 149.69461 * 1 2 3 29 29 H 1.09002 * 109.47102 * 29.68954 * 1 2 3 30 30 H 1.08001 * 126.06583 * 359.96873 * 3 2 1 31 31 H 0.96991 * 120.00118 * 180.29785 * 5 4 3 32 32 H 1.08006 * 120.53336 * 0.02562 * 9 8 6 33 33 H 1.08997 * 109.47120 * 269.97432 * 12 11 10 34 34 H 1.08995 * 109.47620 * 29.97716 * 12 11 10 35 35 H 1.09002 * 109.47348 * 149.97850 * 12 11 10 36 36 H 1.08998 * 109.46877 * 263.65471 * 15 14 13 37 37 H 1.09000 * 109.47140 * 23.65216 * 15 14 13 38 38 H 1.08999 * 109.46846 * 143.65708 * 15 14 13 39 39 H 1.08995 * 109.47455 * 209.99753 * 18 17 2 40 40 H 1.08998 * 109.46924 * 329.99874 * 18 17 2 41 41 H 0.96997 * 120.00330 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0036 5 7 4.7731 1.4745 0.0085 6 6 4.6363 2.8152 0.0161 7 8 3.5272 3.3132 0.0183 8 6 5.8347 3.6803 0.0217 9 6 7.1169 3.1329 0.1465 10 7 8.1608 3.9429 0.1416 11 6 8.0064 5.2481 0.0329 12 6 9.2283 6.1302 0.0391 13 7 6.8172 5.8059 -0.0815 14 6 5.7192 5.0703 -0.0915 15 6 4.3648 5.7180 -0.2233 16 7 3.6337 -0.6578 -0.0035 17 7 2.3016 -1.0909 -0.0058 18 6 1.8500 -2.4846 -0.0127 19 6 1.6945 -2.9553 -1.4358 20 1 1.9101 -2.2833 -2.2534 21 6 1.2760 -4.2433 -1.6942 22 7 1.0130 -5.0614 -0.6986 23 14 1.0840 -4.8270 -3.4582 24 1 2.3902 -4.7269 -4.1576 25 1 0.6261 -6.2396 -3.4652 26 1 0.0836 -3.9784 -4.1542 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1211 -0.0005 31 1 5.6579 1.0772 0.0064 32 1 7.2510 2.0653 0.2405 33 1 9.4611 6.4212 1.0634 34 1 10.0719 5.5854 -0.3845 35 1 9.0356 7.0222 -0.5570 36 1 3.9274 5.8502 0.7663 37 1 4.4721 6.6895 -0.7058 38 1 3.7154 5.0828 -0.8257 39 1 2.5847 -3.1072 0.4977 40 1 0.8915 -2.5584 0.5012 41 1 0.7189 -5.9677 -0.8803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272161104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:04 Heat of formation + Delta-G solvation = 90.182213 kcal Electronic energy + Delta-G solvation = -25035.373797 eV Core-core repulsion = 21338.428558 eV Total energy + Delta-G solvation = -3696.945240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72143 -40.71554 -39.24772 -35.42045 -34.50909 -33.94981 -33.33606 -31.53748 -30.92934 -29.52152 -28.86160 -26.67980 -26.39996 -24.44310 -23.48032 -22.63186 -21.62296 -19.98357 -19.53247 -18.14246 -17.37188 -16.73299 -16.25829 -16.11302 -16.00883 -15.38217 -15.06001 -14.75937 -14.34000 -14.09099 -13.94064 -13.48579 -13.35417 -13.11375 -12.76597 -12.71446 -12.52021 -12.46331 -12.40426 -12.20867 -11.90681 -11.63885 -11.46850 -11.13957 -10.89746 -10.85241 -10.55125 -10.27985 -10.00438 -9.80192 -9.69169 -9.61706 -9.56740 -8.67772 -8.03175 -7.55234 -6.29324 -4.37370 0.07466 0.67425 2.32296 2.55013 2.82240 3.20772 3.24974 3.28800 3.32483 3.45741 3.62937 3.69074 3.74497 3.99864 4.26509 4.37165 4.56328 4.73802 5.02273 5.04351 5.13231 5.27251 5.35669 5.43257 5.47094 5.58893 5.62774 5.82250 5.88633 6.04576 6.06477 6.17338 6.40288 6.45015 6.55360 6.62953 6.87320 6.99855 7.30543 7.50398 7.62763 7.66296 7.84184 7.97456 8.02877 8.55644 8.69865 9.29241 10.77965 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002638 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.257303 B =10611.861462 C =11192.887029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.261 3.739 5 N -0.623 5.623 6 C 0.576 3.424 7 O -0.501 6.501 8 C -0.249 4.249 9 C 0.192 3.808 10 N -0.526 5.526 11 C 0.340 3.660 12 C -0.089 4.089 13 N -0.525 5.525 14 C 0.244 3.756 15 C -0.114 4.114 16 N -0.317 5.317 17 N -0.314 5.314 18 C 0.258 3.742 19 C -0.538 4.538 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.408 0.592 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 19.562 2.657 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.009 3.991 5 N -0.270 5.270 6 C 0.362 3.638 7 O -0.376 6.376 8 C -0.257 4.257 9 C 0.025 3.975 10 N -0.241 5.241 11 C 0.074 3.926 12 C -0.147 4.147 13 N -0.240 5.240 14 C 0.097 3.903 15 C -0.171 4.171 16 N -0.148 5.148 17 N -0.097 5.097 18 C 0.141 3.859 19 C -0.577 4.577 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.178 0.822 31 H 0.244 0.756 32 H 0.191 0.809 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.296 19.144 2.704 21.904 hybrid contribution -0.645 -0.767 -0.888 1.339 sum 9.650 18.377 1.816 20.836 Atomic orbital electron populations 1.20389 0.87807 1.03953 1.02602 1.21085 0.94992 0.87082 1.00713 1.21239 0.89542 0.99876 1.21228 1.18887 0.86906 0.89601 1.03708 1.42233 1.07818 1.04742 1.72220 1.17569 0.88286 0.80929 0.77057 1.90696 1.25734 1.73292 1.47893 1.21431 0.95581 0.96396 1.12286 1.23529 0.86730 1.00611 0.86644 1.68312 1.34259 1.05216 1.16319 1.23557 0.93297 0.88622 0.87099 1.20653 0.91851 0.97933 1.04240 1.68295 0.98427 1.40555 1.16729 1.22011 0.95724 0.88515 0.84054 1.21141 0.89862 1.01299 1.04762 1.77273 1.00098 1.08345 1.29056 1.49033 1.00875 1.07899 1.51856 1.19712 0.96029 0.71207 0.98980 1.21274 1.47079 0.98033 0.91294 0.91781 1.24925 0.94615 0.96021 0.98166 1.69905 1.44697 1.07042 1.31236 0.86409 0.78833 0.77697 0.83718 1.19978 1.20928 1.19903 0.91016 0.89854 0.90546 0.82191 0.75559 0.80924 0.89142 0.89220 0.89272 0.88857 0.90494 0.87212 0.92943 0.92708 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.01 0.36 -1.10 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.60 9.52 -39.83 -0.38 -5.98 16 4 C 0.26 5.06 8.11 -154.44 -1.25 3.81 16 5 N -0.62 -9.16 5.40 -12.00 -0.06 -9.22 16 6 C 0.58 7.97 7.69 -12.35 -0.10 7.88 16 7 O -0.50 -7.85 10.65 5.30 0.06 -7.79 16 8 C -0.25 -2.89 5.91 -104.70 -0.62 -3.51 16 9 C 0.19 1.95 10.80 -16.77 -0.18 1.77 16 10 N -0.53 -5.67 10.31 -10.39 -0.11 -5.78 16 11 C 0.34 3.49 7.64 -157.07 -1.20 2.29 16 12 C -0.09 -0.56 10.31 36.01 0.37 -0.19 16 13 N -0.52 -5.91 10.25 -6.67 -0.07 -5.97 16 14 C 0.24 2.80 6.87 -81.81 -0.56 2.24 16 15 C -0.11 -1.15 8.99 36.01 0.32 -0.82 16 16 N -0.32 -7.06 12.59 31.43 0.40 -6.67 16 17 N -0.31 -7.23 3.59 -58.33 -0.21 -7.44 16 18 C 0.26 6.47 5.81 -5.19 -0.03 6.44 16 19 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 20 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 23 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.16 2.95 5.91 -52.49 -0.31 2.64 16 31 H 0.41 4.77 7.00 -40.82 -0.29 4.49 16 32 H 0.17 1.27 6.58 -52.48 -0.35 0.92 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.24 5.95 -51.93 -0.31 0.93 16 39 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -32.06 352.31 -8.20 -40.26 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.97 Total: 4.50 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -4.26 Total: 0.95 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.68 Total: -59.03 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.06 Total: -7.79 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.06 -8.20 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272161104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.443 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds