Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35238 * 126.06691 * 2 1 4 4 C 1.40419 * 107.86627 * 179.84360 * 3 2 1 5 5 N 1.40090 * 125.97891 * 180.18284 * 4 3 2 6 6 C 1.34771 * 119.99547 * 0.30263 * 5 4 3 7 7 O 1.21576 * 120.00504 * 359.97438 * 6 5 4 8 8 C 1.47805 * 120.00023 * 179.97438 * 6 5 4 9 9 C 1.39981 * 120.94126 * 353.91909 * 8 6 5 10 10 N 1.32131 * 118.92187 * 179.74340 * 9 8 6 11 11 C 1.31878 * 120.96686 * 0.56827 * 10 9 8 12 12 C 1.50701 * 118.94792 * 179.70536 * 11 10 9 13 13 N 1.31851 * 122.10083 * 359.68248 * 11 10 9 14 14 C 1.32160 * 120.96802 * 0.02562 * 13 11 10 15 15 C 1.50708 * 120.53701 * 180.02562 * 14 13 11 16 16 N 1.31236 * 108.04938 * 0.42247 * 4 3 2 17 17 N 1.34963 * 126.06713 * 180.30426 * 2 1 3 18 18 C 1.46505 * 125.97752 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.47022 * 89.99691 * 18 17 2 20 20 H 1.07998 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00182 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46998 * 59.99378 * 23 21 19 25 25 H 1.48500 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47111 * 299.99783 * 23 21 19 27 27 H 1.09004 * 109.46958 * 269.69224 * 1 2 3 28 28 H 1.09000 * 109.47109 * 149.69461 * 1 2 3 29 29 H 1.09002 * 109.47102 * 29.68954 * 1 2 3 30 30 H 1.08001 * 126.06583 * 359.96873 * 3 2 1 31 31 H 0.96991 * 120.00118 * 180.29785 * 5 4 3 32 32 H 1.08006 * 120.53336 * 0.02562 * 9 8 6 33 33 H 1.08997 * 109.47120 * 269.97432 * 12 11 10 34 34 H 1.08995 * 109.47620 * 29.97716 * 12 11 10 35 35 H 1.09002 * 109.47348 * 149.97850 * 12 11 10 36 36 H 1.08998 * 109.46877 * 263.65471 * 15 14 13 37 37 H 1.09000 * 109.47140 * 23.65216 * 15 14 13 38 38 H 1.08999 * 109.46846 * 143.65708 * 15 14 13 39 39 H 1.08995 * 109.47455 * 209.99753 * 18 17 2 40 40 H 1.08998 * 109.46924 * 329.99874 * 18 17 2 41 41 H 0.96997 * 120.00330 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0036 5 7 4.7731 1.4745 0.0085 6 6 4.6363 2.8152 0.0161 7 8 3.5272 3.3132 0.0183 8 6 5.8347 3.6803 0.0217 9 6 7.1169 3.1329 0.1465 10 7 8.1608 3.9429 0.1416 11 6 8.0064 5.2481 0.0329 12 6 9.2283 6.1302 0.0391 13 7 6.8172 5.8059 -0.0815 14 6 5.7192 5.0703 -0.0915 15 6 4.3648 5.7180 -0.2233 16 7 3.6337 -0.6578 -0.0035 17 7 2.3016 -1.0909 -0.0058 18 6 1.8500 -2.4846 -0.0127 19 6 1.6945 -2.9553 -1.4358 20 1 1.9101 -2.2833 -2.2534 21 6 1.2760 -4.2433 -1.6942 22 7 1.0130 -5.0614 -0.6986 23 14 1.0840 -4.8270 -3.4582 24 1 2.3902 -4.7269 -4.1576 25 1 0.6261 -6.2396 -3.4652 26 1 0.0836 -3.9784 -4.1542 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1211 -0.0005 31 1 5.6579 1.0772 0.0064 32 1 7.2510 2.0653 0.2405 33 1 9.4611 6.4212 1.0634 34 1 10.0719 5.5854 -0.3845 35 1 9.0356 7.0222 -0.5570 36 1 3.9274 5.8502 0.7663 37 1 4.4721 6.6895 -0.7058 38 1 3.7154 5.0828 -0.8257 39 1 2.5847 -3.1072 0.4977 40 1 0.8915 -2.5584 0.5012 41 1 0.7189 -5.9677 -0.8803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272161104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = 70.357090 kcal Electronic energy + Delta-G solvation = -25036.233479 eV Core-core repulsion = 21338.428558 eV Total energy + Delta-G solvation = -3697.804921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67955 -42.13272 -40.45260 -36.64759 -35.60899 -35.29059 -34.63013 -33.02516 -32.63067 -30.22212 -29.83487 -28.43521 -27.87428 -25.44693 -24.93968 -23.83020 -22.73774 -21.37513 -20.97307 -19.06866 -18.82211 -18.50621 -17.58389 -17.10429 -16.96000 -16.91151 -16.34513 -16.17584 -15.80253 -15.53789 -14.75589 -14.68839 -14.36391 -14.20649 -14.11903 -13.81489 -13.65014 -13.62684 -13.33647 -13.28858 -13.17238 -13.11421 -12.86636 -12.69009 -12.67021 -12.23507 -12.14878 -11.71284 -11.54944 -11.39002 -10.84266 -10.73117 -10.63146 -10.47387 -9.60599 -9.16641 -8.33030 -6.50559 -0.79138 -0.15234 0.95504 1.21158 1.38314 1.39857 1.45630 1.49726 2.13708 2.20009 2.36729 2.57871 2.76184 2.85353 2.97014 3.18782 3.37777 3.64699 3.88086 4.03104 4.14387 4.31960 4.46201 4.65373 4.67596 4.70815 4.73983 4.78521 4.79705 4.86864 4.89603 4.97228 4.98674 5.10962 5.21044 5.26056 5.35597 5.53322 5.73854 5.80784 5.88920 6.14781 6.25084 6.61443 6.83198 6.86230 7.01220 7.20446 8.72823 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002638 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.257303 B =10611.861462 C =11192.887029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.294 4.294 4 C 0.273 3.727 5 N -0.617 5.617 6 C 0.582 3.418 7 O -0.519 6.519 8 C -0.261 4.261 9 C 0.199 3.801 10 N -0.537 5.537 11 C 0.335 3.665 12 C -0.087 4.087 13 N -0.535 5.535 14 C 0.238 3.762 15 C -0.109 4.109 16 N -0.355 5.355 17 N -0.341 5.341 18 C 0.276 3.724 19 C -0.554 4.554 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.273 1.273 26 H -0.265 1.265 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.173 0.827 31 H 0.422 0.578 32 H 0.198 0.802 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.025 0.975 40 H 0.053 0.947 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 21.085 2.057 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.324 4.324 4 C 0.019 3.981 5 N -0.266 5.266 6 C 0.369 3.631 7 O -0.395 6.395 8 C -0.269 4.269 9 C 0.032 3.968 10 N -0.252 5.252 11 C 0.071 3.929 12 C -0.145 4.145 13 N -0.251 5.251 14 C 0.091 3.909 15 C -0.166 4.166 16 N -0.186 5.186 17 N -0.124 5.124 18 C 0.157 3.843 19 C -0.592 4.592 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.198 1.198 26 H -0.190 1.190 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.190 0.810 31 H 0.261 0.739 32 H 0.214 0.786 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.010 20.700 2.112 23.541 hybrid contribution -0.761 -1.079 -0.652 1.473 sum 10.249 19.621 1.460 22.185 Atomic orbital electron populations 1.20510 0.85348 1.04436 1.04129 1.21776 0.96705 0.86419 0.99370 1.21460 0.89579 1.00123 1.21277 1.19183 0.88449 0.89175 1.01301 1.42287 1.07289 1.04718 1.72354 1.17874 0.88815 0.80470 0.75898 1.90678 1.26756 1.73490 1.48528 1.21195 0.95049 0.96093 1.14527 1.23931 0.86065 1.01785 0.85026 1.68444 1.34185 1.05577 1.17014 1.24345 0.94132 0.89043 0.85419 1.20820 0.90475 0.97749 1.05478 1.68398 0.98645 1.40517 1.17551 1.22257 0.96424 0.88647 0.83545 1.21101 0.89059 1.01598 1.04838 1.77191 1.00165 1.09900 1.31312 1.48806 1.01707 1.07597 1.54294 1.19244 0.94941 0.72412 0.97734 1.21408 1.47608 0.98380 0.91797 0.93182 1.25714 0.93971 0.95919 1.02157 1.69989 1.44988 1.07434 1.33147 0.85436 0.78735 0.77686 0.78825 1.20120 1.19815 1.18993 0.88881 0.91546 0.87761 0.80973 0.73942 0.78556 0.87579 0.88132 0.88224 0.88461 0.89100 0.88488 0.95724 0.92966 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.89 71.24 0.70 -2.04 16 2 C 0.09 3.54 6.92 41.39 0.29 3.83 16 3 C -0.29 -11.28 9.52 22.11 0.21 -11.07 16 4 C 0.27 10.53 8.11 133.35 1.08 11.61 16 5 N -0.62 -17.67 5.40 -310.15 -1.68 -19.34 16 6 C 0.58 15.55 7.69 86.78 0.67 16.22 16 7 O -0.52 -15.80 10.65 -3.96 -0.04 -15.84 16 8 C -0.26 -5.72 5.91 -19.91 -0.12 -5.84 16 9 C 0.20 3.71 10.80 85.07 0.92 4.63 16 10 N -0.54 -10.52 10.31 -186.78 -1.93 -12.45 16 11 C 0.34 6.21 7.64 138.71 1.06 7.27 16 12 C -0.09 -0.89 10.31 71.24 0.73 -0.15 16 13 N -0.54 -11.15 10.25 -175.02 -1.79 -12.94 16 14 C 0.24 5.17 6.87 42.92 0.29 5.46 16 15 C -0.11 -2.08 8.99 71.24 0.64 -1.44 16 16 N -0.36 -16.12 12.59 -54.48 -0.69 -16.81 16 17 N -0.34 -16.09 3.59 -338.44 -1.22 -17.31 16 18 C 0.28 14.31 5.81 85.63 0.50 14.81 16 19 C -0.55 -30.60 9.39 25.60 0.24 -30.36 16 20 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 21 C 0.02 1.27 5.46 84.65 0.46 1.74 16 22 N -0.92 -51.32 13.29 21.45 0.28 -51.04 16 23 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.07 2.35 7.71 -2.39 -0.02 2.33 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.17 6.16 5.91 -2.91 -0.02 6.14 16 31 H 0.42 9.44 7.00 -92.72 -0.65 8.79 16 32 H 0.20 2.49 6.58 -2.91 -0.02 2.47 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 2.13 5.95 -2.39 -0.01 2.11 16 39 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 2.68 7.65 -2.39 -0.02 2.67 16 41 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -69.20 352.31 3.09 -66.11 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.44 Total: 20.34 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 7.68 Total: 14.67 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -7.01 Total: -129.89 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.04 Total: -15.84 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -69.20 3.09 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272161104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.470 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds