Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47530 * 119.99920 * 180.02562 * 14 13 3 17 17 C 1.36598 * 125.76975 * 179.72216 * 16 14 13 18 18 N 1.34815 * 106.83781 * 179.89739 * 17 16 14 19 19 C 1.46497 * 126.59229 * 180.10858 * 18 17 16 20 20 C 1.50698 * 109.47206 * 125.26862 * 19 18 17 21 21 C 1.38232 * 119.61752 * 124.72778 * 20 19 18 22 22 C 1.38625 * 119.16131 * 179.75435 * 21 20 19 23 23 C 1.38675 * 118.41887 * 0.50313 * 22 21 20 24 24 C 1.38181 * 119.16216 * 359.73804 * 23 22 21 25 25 N 1.31848 * 119.61978 * 304.99416 * 20 19 18 26 26 N 1.40205 * 106.80978 * 0.35075 * 18 17 16 27 27 N 1.28761 * 108.37211 * 359.77574 * 26 18 17 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.08003 * 126.57931 * 0.02633 * 17 16 14 36 36 H 1.09003 * 109.47029 * 245.26584 * 19 18 17 37 37 H 1.08999 * 109.47385 * 5.26493 * 19 18 17 38 38 H 1.08003 * 120.41595 * 359.97438 * 21 20 19 39 39 H 1.08001 * 120.79351 * 180.26366 * 22 21 20 40 40 H 1.08001 * 120.42117 * 179.70530 * 23 22 21 41 41 H 1.08000 * 119.61734 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0448 3.3236 -2.6276 17 6 -1.1551 3.9281 -2.8743 18 7 -1.1016 4.4021 -4.1352 19 6 -2.1597 5.1298 -4.8402 20 6 -1.6153 6.4396 -5.3492 21 6 -1.7180 6.7460 -6.6932 22 6 -1.2186 7.9558 -7.1502 23 6 -0.6225 8.8114 -6.2361 24 6 -0.5515 8.4348 -4.9085 25 7 -1.0419 7.2777 -4.5083 26 7 0.1592 4.0598 -4.6439 27 7 0.8073 3.4259 -3.7296 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0605 2.9503 34 1 2.2720 2.1232 -1.9977 35 1 -1.9862 4.0122 -2.1897 36 1 -2.5137 4.5324 -5.6805 37 1 -2.9868 5.3211 -4.1565 38 1 -2.1846 6.0532 -7.3779 39 1 -1.2886 8.2238 -8.1941 40 1 -0.2184 9.7598 -6.5578 41 1 -0.0885 9.0953 -4.1903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273914522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = 95.583512 kcal Electronic energy + Delta-G solvation = -25101.003161 eV Core-core repulsion = 21404.292139 eV Total energy + Delta-G solvation = -3696.711022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99778 -40.55710 -38.62241 -35.23925 -34.96570 -32.86916 -32.33534 -31.93463 -31.09144 -30.17224 -27.77183 -26.80077 -24.02551 -23.60873 -23.29380 -22.48479 -21.67269 -20.22116 -19.22672 -18.12741 -17.39866 -16.67855 -16.45524 -16.16513 -15.51162 -15.45089 -15.32069 -14.68432 -14.33599 -14.21199 -14.11033 -13.81738 -13.55177 -13.22972 -13.00945 -12.59857 -12.27466 -11.93324 -11.90187 -11.42382 -11.18285 -11.08061 -10.90558 -10.74602 -10.42011 -10.29683 -10.26031 -10.09428 -9.87388 -9.56381 -9.53688 -9.15785 -8.98073 -8.95694 -8.41366 -7.71925 -6.04112 -4.12466 0.52863 0.83226 1.33429 2.11049 2.15409 3.33179 3.33278 3.37371 3.39967 3.60787 4.03996 4.08230 4.13602 4.35894 4.44132 4.48489 4.52404 4.59829 4.68644 4.77726 5.05456 5.10811 5.23945 5.27106 5.38759 5.43990 5.64092 5.70282 6.15406 6.19482 6.42295 6.46878 6.54332 6.73751 7.13644 7.26790 7.44486 7.52100 7.52647 7.71094 7.81954 7.98053 8.17886 8.25937 8.78636 8.85998 9.19894 9.54240 11.01373 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.002737 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.666392 B =10228.064952 C =11045.409774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.587 3.413 15 O -0.549 6.549 16 C -0.087 4.087 17 C 0.092 3.908 18 N -0.359 5.359 19 C 0.180 3.820 20 C 0.106 3.894 21 C -0.150 4.150 22 C -0.074 4.074 23 C -0.165 4.165 24 C 0.105 3.895 25 N -0.466 5.466 26 N -0.071 5.071 27 N -0.203 5.203 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.396 0.604 35 H 0.202 0.798 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 14.056 -18.471 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.336 5.336 14 C 0.369 3.631 15 O -0.428 6.428 16 C -0.226 4.226 17 C -0.064 4.064 18 N -0.145 5.145 19 C 0.058 3.942 20 C -0.033 4.033 21 C -0.170 4.170 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.052 4.052 25 N -0.175 5.175 26 N -0.051 5.051 27 N -0.077 5.077 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.219 0.781 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.082 13.755 -17.917 26.103 hybrid contribution 0.495 0.393 -0.459 0.781 sum -12.586 14.148 -18.376 26.387 Atomic orbital electron populations 1.21842 0.98381 0.98016 1.01215 1.21938 0.92629 0.99733 1.02377 1.18841 0.94309 0.89223 0.80762 0.93087 1.21222 0.90717 1.38836 1.06271 0.92004 1.24868 0.98557 0.94837 0.95370 1.69887 1.35146 1.37786 1.09338 0.86512 0.84965 0.78313 0.77351 1.20193 1.21206 1.20146 1.46355 1.14081 1.54373 1.18760 1.16769 0.83296 0.78795 0.84202 1.90765 1.51999 1.61194 1.38808 1.21944 0.93183 1.10595 0.96901 1.23317 1.00618 0.95650 0.86820 1.50151 1.14228 1.39316 1.10767 1.20707 0.87026 0.87955 0.98557 1.20980 0.96879 0.94878 0.90534 1.21909 1.01163 0.98192 0.95728 1.21600 0.94863 0.93200 1.00381 1.22246 1.00270 1.01249 0.94734 1.22798 0.95196 0.92522 0.94699 1.67413 1.07963 1.03258 1.38867 1.81924 0.88259 1.16613 1.18280 1.74636 1.24494 1.09546 0.99043 0.94309 0.93076 0.95873 0.88194 0.94931 0.92585 0.77038 0.78135 0.86900 0.86112 0.84302 0.84398 0.84441 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.20 5.45 -26.74 -0.15 -3.35 16 3 C 0.27 7.05 2.24 -69.09 -0.15 6.90 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.59 8.73 -34.44 -0.30 -14.89 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.15 11.29 55.43 0.63 -24.53 16 9 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.69 -15.70 5.02 -55.98 -0.28 -15.98 16 14 C 0.59 12.60 6.38 -12.47 -0.08 12.52 16 15 O -0.55 -12.85 14.00 5.28 0.07 -12.78 16 16 C -0.09 -1.57 6.99 -83.55 -0.58 -2.15 16 17 C 0.09 1.28 11.27 -16.83 -0.19 1.09 16 18 N -0.36 -4.50 3.64 -62.24 -0.23 -4.73 16 19 C 0.18 1.38 6.92 -5.20 -0.04 1.34 16 20 C 0.11 0.96 6.26 -82.59 -0.52 0.44 16 21 C -0.15 -1.01 9.71 -39.44 -0.38 -1.39 16 22 C -0.07 -0.45 10.18 -39.28 -0.40 -0.85 16 23 C -0.17 -1.09 10.11 -39.44 -0.40 -1.48 16 24 C 0.11 0.93 11.18 -17.55 -0.20 0.74 16 25 N -0.47 -5.20 10.22 -9.48 -0.10 -5.30 16 26 N -0.07 -1.14 13.63 60.35 0.82 -0.31 16 27 N -0.20 -3.71 12.04 32.85 0.40 -3.32 16 28 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.40 8.54 8.23 -40.82 -0.34 8.21 16 35 H 0.20 2.19 8.06 -52.48 -0.42 1.77 16 36 H 0.11 0.54 7.87 -51.93 -0.41 0.13 16 37 H 0.12 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.14 0.56 7.95 -52.48 -0.42 0.14 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -34.69 353.64 -6.60 -41.29 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.06 Total: 6.26 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.16 Total: -2.15 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 1.24 Total: -54.16 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.69 -6.60 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273914522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.877 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds