Wall clock time and date at job start Tue Mar 31 2020 11:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53009 * 109.47141 * 2 1 4 4 H 1.08995 * 109.46645 * 305.00012 * 3 2 1 5 5 C 1.50698 * 109.47087 * 184.99842 * 3 2 1 6 6 H 1.07998 * 119.99852 * 239.99674 * 5 3 2 7 7 C 1.37874 * 119.99962 * 60.00081 * 5 3 2 8 8 N 1.31516 * 120.00200 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47102 * 59.99889 * 9 7 5 11 11 H 1.48507 * 109.47335 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47176 * 299.99840 * 9 7 5 13 13 N 1.46500 * 109.46927 * 64.99707 * 3 2 1 14 14 C 1.34776 * 120.00006 * 274.99948 * 13 3 2 15 15 O 1.21587 * 120.00220 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00045 * 179.97438 * 14 13 3 17 17 C 1.40210 * 120.00131 * 180.02562 * 16 14 13 18 18 C 1.39953 * 126.71558 * 0.02562 * 17 16 14 19 19 N 1.30944 * 108.23719 * 180.02562 * 18 17 16 20 20 N 1.28703 * 109.71717 * 0.02562 * 19 18 17 21 21 C 1.40155 * 125.66847 * 179.97438 * 20 19 18 22 22 C 1.38849 * 120.06953 * 179.75383 * 21 20 19 23 23 C 1.38119 * 119.93451 * 179.71898 * 22 21 20 24 24 C 1.38282 * 120.06415 * 0.52817 * 23 22 21 25 25 C 1.38291 * 120.13651 * 359.76811 * 24 23 22 26 26 C 1.38110 * 120.06832 * 359.95526 * 25 24 23 27 27 N 1.31877 * 126.71707 * 180.02562 * 17 16 14 28 28 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47791 * 299.99923 * 1 2 3 30 30 H 1.09006 * 109.47452 * 60.00400 * 1 2 3 31 31 H 1.08998 * 109.47791 * 240.00077 * 2 1 3 32 32 H 1.08998 * 109.47326 * 119.99893 * 2 1 3 33 33 H 0.97004 * 120.00082 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99698 * 95.00329 * 13 3 2 35 35 H 0.97005 * 119.99659 * 0.02562 * 16 14 13 36 36 H 1.08002 * 125.88661 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.03425 * 359.96553 * 22 21 20 38 38 H 1.08001 * 119.96831 * 180.26741 * 23 22 21 39 39 H 1.08003 * 119.93355 * 179.74369 * 24 23 22 40 40 H 1.07997 * 119.96151 * 179.97438 * 25 24 23 41 41 H 1.07993 * 120.03597 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0048 0.8813 -1.3817 10 1 6.5974 0.1474 -0.2347 11 1 6.3978 0.2178 -2.6508 12 1 6.4993 2.2816 -1.3820 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3417 2.6319 0.4320 16 7 0.0781 3.2666 2.5187 17 6 -1.1884 3.8558 2.6386 18 6 -2.1866 3.9006 1.6587 19 7 -3.2187 4.5366 2.1537 20 7 -2.9655 4.9011 3.3618 21 6 -3.8381 5.6049 4.2029 22 6 -3.4453 5.9355 5.4930 23 6 -4.3053 6.6342 6.3176 24 6 -5.5605 6.9948 5.8633 25 6 -5.9570 6.6616 4.5810 26 6 -5.0994 5.9680 3.7498 27 7 -1.6723 4.4764 3.6969 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0618 -2.9494 34 1 2.2718 2.1232 1.9978 35 1 0.6977 3.2922 3.2647 36 1 -2.1177 3.4826 0.6652 37 1 -2.4667 5.6502 5.8500 38 1 -3.9986 6.8955 7.3197 39 1 -6.2329 7.5375 6.5113 40 1 -6.9382 6.9443 4.2292 41 1 -5.4094 5.7084 2.7484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274685623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:40 Heat of formation + Delta-G solvation = 98.958422 kcal Electronic energy + Delta-G solvation = -25065.528271 eV Core-core repulsion = 21368.963596 eV Total energy + Delta-G solvation = -3696.564675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.74897 -41.30261 -40.05827 -37.48144 -36.14392 -34.55538 -33.98535 -33.19634 -32.40535 -31.83334 -30.00421 -28.82848 -25.33540 -25.05555 -24.32101 -23.20677 -22.41189 -21.83400 -21.38596 -19.91310 -19.12631 -18.42348 -17.76781 -17.53570 -17.15759 -16.89438 -16.51761 -16.32040 -15.96054 -15.50394 -15.22578 -14.97093 -14.53911 -14.43976 -14.34607 -13.86898 -13.51699 -13.14127 -13.05530 -12.89158 -12.71704 -12.60251 -12.51637 -12.39555 -12.17195 -12.04788 -11.87970 -11.53683 -11.29305 -11.21073 -11.02153 -10.50498 -10.46506 -10.03372 -9.71555 -9.03885 -8.13318 -6.29709 -0.41242 0.32439 0.61663 0.81959 1.24821 1.48350 1.49458 1.56461 1.62847 2.25225 2.43893 2.76063 3.03045 3.16187 3.21688 3.79755 3.89077 3.93969 4.21016 4.35294 4.43683 4.48463 4.51380 4.56114 4.62650 4.77506 4.84259 5.03017 5.10008 5.22238 5.29663 5.35566 5.37193 5.47494 5.49915 5.52228 5.61247 5.63311 5.72881 5.87739 6.00074 6.12412 6.20404 6.76540 6.81011 7.12275 7.36456 7.57042 8.91656 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036614 B = 0.002360 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.553167 B =11860.437299 C =12266.745608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.296 3.704 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.704 5.704 14 C 0.705 3.295 15 O -0.596 6.596 16 N -0.628 5.628 17 C 0.301 3.699 18 C -0.038 4.038 19 N -0.241 5.241 20 N -0.179 5.179 21 C 0.132 3.868 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.114 4.114 25 C -0.094 4.094 26 C -0.131 4.131 27 N -0.318 5.318 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.429 0.571 36 H 0.212 0.788 37 H 0.133 0.867 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.197 11.149 17.757 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.193 3.807 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.356 5.356 14 C 0.405 3.595 15 O -0.474 6.474 16 N -0.283 5.283 17 C 0.039 3.961 18 C -0.226 4.226 19 N -0.078 5.078 20 N -0.071 5.071 21 C 0.041 3.959 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.152 4.152 27 N -0.158 5.158 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.268 0.732 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.180 0.820 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.543 11.603 17.489 26.117 hybrid contribution 2.320 -0.821 -0.670 2.551 sum -13.223 10.782 16.819 23.958 Atomic orbital electron populations 1.21668 0.96909 0.99047 1.00425 1.21824 0.93792 0.99116 1.01457 1.18379 0.93520 0.88920 0.79858 0.97361 1.21518 0.91290 1.39040 1.06741 0.90854 1.25695 1.02972 0.94469 0.95101 1.70028 1.36995 1.38166 1.09828 0.85466 0.79476 0.78329 0.77446 1.19031 1.21432 1.19826 1.45413 1.13284 1.57971 1.18937 1.15875 0.83499 0.78502 0.81647 1.90808 1.52313 1.65052 1.39242 1.41578 1.12555 1.57200 1.16947 1.19812 0.88480 0.95212 0.92555 1.25153 0.88550 1.05229 1.03669 1.73394 1.26098 1.11885 0.96407 1.47909 1.09411 1.42148 1.07594 1.17873 0.89472 0.98213 0.90301 1.21070 1.01985 1.00560 0.91187 1.21431 0.93402 0.96026 1.00488 1.21753 0.96515 0.98978 0.96027 1.21416 1.00059 0.96142 0.93667 1.21093 0.91473 1.00700 1.01973 1.78030 0.95256 1.21937 1.20555 0.93965 0.93950 0.94974 0.90782 0.94020 0.92589 0.75901 0.73194 0.77122 0.84908 0.81961 0.81710 0.81994 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.51 71.98 0.61 -4.69 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.58 16 3 C 0.30 14.25 2.24 44.25 0.10 14.35 16 4 H 0.01 0.48 7.58 -2.39 -0.02 0.47 16 5 C -0.55 -27.45 8.73 25.60 0.22 -27.23 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -50.35 11.29 21.45 0.24 -50.11 16 9 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.70 -26.71 5.03 -461.40 -2.32 -29.03 16 14 C 0.71 26.33 7.10 179.05 1.27 27.60 16 15 O -0.60 -26.06 10.69 -3.99 -0.04 -26.10 16 16 N -0.63 -18.90 5.46 -321.13 -1.75 -20.66 16 17 C 0.30 9.94 8.19 133.00 1.09 11.02 16 18 C -0.04 -1.33 10.85 85.24 0.92 -0.40 16 19 N -0.24 -8.02 11.24 -56.91 -0.64 -8.66 16 20 N -0.18 -5.56 4.44 -51.14 -0.23 -5.79 16 21 C 0.13 3.30 6.74 38.10 0.26 3.55 16 22 C -0.13 -2.52 9.65 22.39 0.22 -2.31 16 23 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 24 C -0.11 -1.13 10.04 22.29 0.22 -0.91 16 25 C -0.09 -1.20 10.04 22.25 0.22 -0.98 16 26 C -0.13 -2.67 9.61 22.39 0.22 -2.45 16 27 N -0.32 -10.03 11.97 -54.37 -0.65 -10.68 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 30 H 0.03 1.48 7.84 -2.38 -0.02 1.46 16 31 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.41 12.66 8.55 -92.70 -0.79 11.86 16 35 H 0.43 9.81 8.84 -92.70 -0.82 9.00 16 36 H 0.21 7.85 5.98 -2.91 -0.02 7.84 16 37 H 0.13 2.71 7.68 -2.91 -0.02 2.69 16 38 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 41 H 0.13 2.80 7.68 -2.91 -0.02 2.77 16 Total: -1.00 -65.89 345.71 2.31 -63.58 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.52 Total: 32.20 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.19 Total: 12.43 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.35 Total: -124.93 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.04 Total: -26.10 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.89 2.31 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274685623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.538 kcal (2) G-P(sol) polarization free energy of solvation -65.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds