Wall clock time and date at job start Tue Mar 31 2020 10:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35246 * 126.06791 * 2 1 4 4 C 1.40418 * 107.86760 * 180.18108 * 3 2 1 5 5 N 1.40115 * 125.97405 * 179.86578 * 4 3 2 6 6 C 1.34770 * 119.99714 * 359.71754 * 5 4 3 7 7 O 1.21615 * 120.00682 * 359.97438 * 6 5 4 8 8 C 1.47418 * 119.99619 * 179.97438 * 6 5 4 9 9 C 1.38048 * 126.41535 * 359.97438 * 8 6 5 10 10 N 1.34271 * 107.41709 * 180.02562 * 9 8 6 11 11 H 0.96997 * 125.75990 * 179.97438 * 10 9 8 12 12 N 1.39935 * 108.48864 * 359.77385 * 10 9 8 13 13 C 1.30454 * 108.90333 * 0.38709 * 12 10 9 14 14 C 1.50690 * 125.99054 * 179.88424 * 13 12 10 15 15 C 1.53000 * 117.50063 * 59.69110 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.49714 * 15 14 13 17 17 N 1.31225 * 108.05168 * 359.60139 * 4 3 2 18 18 N 1.34966 * 126.07313 * 179.75038 * 2 1 3 19 19 C 1.46499 * 125.97132 * 359.94064 * 18 2 1 20 20 C 1.50698 * 109.47197 * 269.99904 * 19 18 2 21 21 H 1.07998 * 120.00021 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99937 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00229 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47401 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47294 * 119.99978 * 24 22 20 27 27 H 1.48507 * 109.46652 * 239.99579 * 24 22 20 28 28 H 1.08997 * 109.46564 * 270.24629 * 1 2 3 29 29 H 1.08995 * 109.47128 * 30.24956 * 1 2 3 30 30 H 1.09000 * 109.46677 * 150.25281 * 1 2 3 31 31 H 1.08000 * 126.06674 * 0.02898 * 3 2 1 32 32 H 0.97000 * 119.99961 * 179.71375 * 5 4 3 33 33 H 1.07998 * 126.29504 * 359.97438 * 9 8 6 34 34 H 1.09008 * 115.56062 * 205.37740 * 14 13 12 35 35 H 1.09002 * 117.49833 * 359.97438 * 15 14 13 36 36 H 1.09002 * 117.49953 * 144.99860 * 15 14 13 37 37 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 38 38 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 39 39 H 1.09001 * 109.47249 * 30.00592 * 19 18 2 40 40 H 1.09001 * 109.47020 * 150.00485 * 19 18 2 41 41 H 0.96998 * 120.00150 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6372 0.6546 -0.0042 5 7 4.7732 1.4748 -0.0083 6 6 4.6363 2.8155 -0.0140 7 8 3.5269 3.3136 -0.0162 8 6 5.8316 3.6783 -0.0177 9 6 7.1463 3.2573 -0.0153 10 7 7.9198 4.3548 -0.0197 11 1 8.8897 4.3646 -0.0189 12 7 7.0907 5.4820 -0.0301 13 6 5.8461 5.0913 -0.0238 14 6 4.6360 5.9892 -0.0286 15 6 4.4740 6.9501 -1.2082 16 6 4.8678 7.4894 0.1685 17 7 3.6338 -0.6576 0.0020 18 7 2.3017 -1.0909 0.0048 19 6 1.8501 -2.4845 0.0121 20 6 1.6964 -2.9553 1.4353 21 1 1.9131 -2.2835 2.2527 22 6 1.2792 -4.2438 1.6940 23 7 1.0159 -5.0620 0.6987 24 14 1.0881 -4.8272 3.4582 25 1 1.4445 -3.7237 4.3859 26 1 -0.3194 -5.2377 3.6942 27 1 1.9879 -5.9842 3.6971 28 1 -0.3632 0.0044 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 1.9719 2.1211 0.0004 32 1 5.6581 1.0775 -0.0068 33 1 7.4896 2.2333 -0.0101 34 1 3.7298 5.5597 0.3987 35 1 5.2430 6.9331 -1.9805 36 1 3.4614 7.1525 -1.5571 37 1 5.8957 7.8269 0.3016 38 1 4.1142 8.0462 0.7253 39 1 0.8910 -2.5584 -0.5007 40 1 2.5843 -3.1071 -0.4992 41 1 0.7221 -5.9684 0.8807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276880112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:08 Heat of formation + Delta-G solvation = 118.119166 kcal Electronic energy + Delta-G solvation = -25035.621468 eV Core-core repulsion = 21339.887666 eV Total energy + Delta-G solvation = -3695.733802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60469 -42.10562 -40.09877 -37.98338 -36.24952 -35.27309 -33.17130 -32.65180 -32.42615 -31.29877 -28.53827 -27.83748 -25.47476 -25.00661 -24.26766 -23.22549 -22.19616 -21.29323 -20.60211 -20.26628 -19.22666 -18.76765 -17.62979 -17.33994 -16.96350 -16.65118 -16.43322 -16.12980 -15.85744 -15.62025 -15.25727 -15.17204 -14.65345 -14.28965 -14.10715 -13.75724 -13.66513 -13.48817 -13.11130 -12.92966 -12.82033 -12.66130 -12.39670 -12.25669 -12.17535 -12.05760 -11.93614 -11.52418 -11.31616 -11.29663 -10.78526 -10.71527 -10.30563 -9.92910 -9.52646 -9.06673 -8.31169 -6.48705 0.39892 0.89233 1.17162 1.37537 1.38116 1.40600 1.53256 1.77925 1.87189 2.32038 2.46013 2.53873 2.98363 3.05683 3.32261 3.56232 3.82493 4.02997 4.05398 4.15884 4.20710 4.23848 4.34278 4.48149 4.63874 4.74705 4.79526 4.86398 4.92301 4.96346 5.03461 5.04409 5.17397 5.23385 5.27998 5.30971 5.34266 5.55905 5.83148 5.99270 6.22247 6.29520 6.32316 6.52111 6.64674 7.06488 7.20346 7.22312 8.74736 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.002688 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.386365 B =10415.781309 C =10985.419927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.298 4.298 4 C 0.277 3.723 5 N -0.620 5.620 6 C 0.601 3.399 7 O -0.545 6.545 8 C -0.311 4.311 9 C 0.141 3.859 10 N -0.441 5.441 11 H 0.464 0.536 12 N -0.316 5.316 13 C 0.159 3.841 14 C -0.108 4.108 15 C -0.153 4.153 16 C -0.154 4.154 17 N -0.357 5.357 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.274 1.274 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.167 0.833 32 H 0.422 0.578 33 H 0.234 0.766 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 20.185 -2.431 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.023 3.977 5 N -0.270 5.270 6 C 0.391 3.609 7 O -0.421 6.421 8 C -0.326 4.326 9 C -0.014 4.014 10 N -0.147 5.147 11 H 0.313 0.687 12 N -0.138 5.138 13 C -0.008 4.008 14 C -0.128 4.128 15 C -0.191 4.191 16 C -0.191 4.191 17 N -0.188 5.188 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.589 4.589 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.260 0.740 33 H 0.250 0.750 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.244 20.222 -2.494 23.771 hybrid contribution -0.098 -1.174 0.720 1.381 sum 12.147 19.048 -1.774 22.660 Atomic orbital electron populations 1.20463 0.85466 1.04168 1.03899 1.21734 0.96610 0.86519 0.99567 1.21454 0.90017 0.99912 1.21493 1.19258 0.88754 0.89155 1.00575 1.42316 1.06806 1.04673 1.73159 1.17548 0.88688 0.79946 0.74736 1.90654 1.27312 1.74067 1.50111 1.19902 0.92632 0.93283 1.26827 1.23785 0.89245 0.95612 0.92724 1.46110 1.10459 1.02806 1.55282 0.68721 1.77071 1.00823 1.08632 1.27301 1.21561 0.92651 0.91766 0.94848 1.20540 0.94841 0.90449 1.07016 1.23013 1.03616 1.01019 0.91462 1.23067 1.03564 0.93110 0.99374 1.77162 0.99947 1.09848 1.31818 1.48763 1.01817 1.07458 1.54573 1.19236 0.94920 0.72480 0.97735 1.21466 1.47334 0.98299 0.91792 0.93267 1.25722 0.93997 0.95921 1.02190 1.70006 1.45238 1.07409 1.33041 0.85312 0.78442 0.78082 0.78653 1.19850 1.19274 1.19971 0.89878 0.87589 0.91329 0.81529 0.73979 0.75029 0.85970 0.88942 0.87025 0.88215 0.86778 0.93084 0.95698 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 10.11 71.24 0.72 -2.03 16 2 C 0.09 3.64 6.92 41.39 0.29 3.93 16 3 C -0.30 -12.23 9.52 22.11 0.21 -12.02 16 4 C 0.28 11.17 8.11 133.34 1.08 12.25 16 5 N -0.62 -18.49 5.44 -310.47 -1.69 -20.17 16 6 C 0.60 17.68 7.78 86.66 0.67 18.35 16 7 O -0.54 -19.32 12.12 -4.08 -0.05 -19.37 16 8 C -0.31 -6.95 6.13 -20.15 -0.12 -7.07 16 9 C 0.14 1.76 11.52 84.28 0.97 2.73 16 10 N -0.44 -5.18 7.29 -56.31 -0.41 -5.59 16 11 H 0.46 1.66 8.96 -213.43 -1.91 -0.25 16 12 N -0.32 -6.31 12.22 -46.67 -0.57 -6.88 16 13 C 0.16 3.70 6.80 43.51 0.30 4.00 16 14 C -0.11 -2.46 5.66 -11.52 -0.07 -2.53 16 15 C -0.15 -2.82 10.23 30.60 0.31 -2.50 16 16 C -0.15 -2.67 10.14 30.62 0.31 -2.36 16 17 N -0.36 -16.58 12.59 -54.47 -0.69 -17.26 16 18 N -0.34 -16.63 3.59 -338.45 -1.22 -17.84 16 19 C 0.28 14.53 5.99 85.63 0.51 15.04 16 20 C -0.55 -30.83 9.39 25.60 0.24 -30.59 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.23 5.46 84.66 0.46 1.69 16 23 N -0.92 -51.71 13.29 21.45 0.28 -51.43 16 24 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.07 2.35 7.07 -2.39 -0.02 2.33 16 31 H 0.17 6.60 5.91 -2.91 -0.02 6.59 16 32 H 0.42 9.21 7.75 -92.71 -0.72 8.50 16 33 H 0.23 0.67 7.46 -2.91 -0.02 0.64 16 34 H 0.12 3.23 6.73 -2.38 -0.02 3.22 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.73 7.90 -2.39 -0.02 1.71 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 39 H 0.05 2.67 7.04 -2.39 -0.02 2.66 16 40 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -76.07 354.94 2.05 -74.02 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -1.53 Total: 20.65 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.89 Total: -1.11 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.29 Total: -119.17 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.07 2.05 -74.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276880112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.139 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds