Wall clock time and date at job start Tue Mar 31 2020 10:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35241 * 126.06874 * 2 1 4 4 C 1.40413 * 107.86503 * 180.15246 * 3 2 1 5 5 N 1.40157 * 125.97192 * 179.82560 * 4 3 2 6 6 C 1.34779 * 120.00135 * 359.71662 * 5 4 3 7 7 O 1.21292 * 119.99720 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00203 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47352 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47164 * 179.97438 * 9 8 6 11 11 C 1.38624 * 120.44417 * 124.99635 * 10 9 8 12 12 C 1.38574 * 118.39673 * 179.70022 * 11 10 9 13 13 N 1.32345 * 119.10916 * 0.28037 * 12 11 10 14 14 C 1.31789 * 120.81651 * 359.97438 * 13 12 11 15 15 N 1.31809 * 121.75220 * 0.02562 * 14 13 12 16 16 N 1.31220 * 108.05303 * 359.56558 * 4 3 2 17 17 N 1.34967 * 126.06816 * 179.67179 * 2 1 3 18 18 C 1.46501 * 125.97454 * 359.96986 * 17 2 1 19 19 C 1.50700 * 109.47037 * 270.01228 * 18 17 2 20 20 H 1.07999 * 120.00256 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99904 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47145 * 89.99721 * 23 21 19 25 25 H 1.48503 * 109.47263 * 210.00263 * 23 21 19 26 26 H 1.48505 * 109.46797 * 330.00142 * 23 21 19 27 27 H 1.08998 * 109.47057 * 270.32471 * 1 2 3 28 28 H 1.09002 * 109.47043 * 30.32728 * 1 2 3 29 29 H 1.09007 * 109.46961 * 150.32196 * 1 2 3 30 30 H 1.07996 * 126.06506 * 0.02562 * 3 2 1 31 31 H 0.96994 * 120.00059 * 179.72161 * 5 4 3 32 32 H 1.09003 * 109.47073 * 59.99726 * 8 6 5 33 33 H 1.09005 * 109.47163 * 300.00108 * 8 6 5 34 34 H 1.08995 * 109.47163 * 59.99700 * 9 8 6 35 35 H 1.08995 * 109.46907 * 299.99945 * 9 8 6 36 36 H 1.08002 * 120.80485 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.45088 * 180.29937 * 12 11 10 38 38 H 1.08002 * 119.12276 * 179.97438 * 14 13 12 39 39 H 1.08999 * 109.47357 * 30.01566 * 18 17 2 40 40 H 1.09003 * 109.46896 * 150.01807 * 18 17 2 41 41 H 0.97002 * 120.00119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 -0.0036 5 7 4.7735 1.4749 -0.0082 6 6 4.6368 2.8157 -0.0153 7 8 3.5302 3.3124 -0.0172 8 6 5.8586 3.6977 -0.0208 9 6 5.4278 5.1658 -0.0278 10 6 6.6497 6.0478 -0.0327 11 6 6.8176 7.0099 -1.0165 12 6 7.9540 7.8018 -0.9767 13 7 8.8382 7.6110 -0.0107 14 6 8.6477 6.6828 0.9053 15 7 7.5791 5.9112 0.8991 16 7 3.6337 -0.6577 0.0039 17 7 2.3016 -1.0909 0.0062 18 6 1.8500 -2.4846 0.0149 19 6 1.6954 -2.9537 1.4386 20 1 1.9116 -2.2810 2.2554 21 6 1.2781 -4.2419 1.6985 22 7 1.0153 -5.0612 0.7039 23 14 1.0858 -4.8233 3.4633 24 1 -0.2972 -4.5463 3.9278 25 1 1.3492 -6.2830 3.5351 26 1 2.0527 -4.1025 4.3300 27 1 -0.3633 0.0058 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 -0.3633 -0.8929 -0.5089 30 1 1.9719 2.1210 0.0004 31 1 5.6584 1.0777 -0.0063 32 1 6.4534 3.4889 -0.9101 33 1 6.4546 3.4985 0.8699 34 1 4.8333 5.3742 0.8616 35 1 4.8317 5.3652 -0.9182 36 1 6.0784 7.1421 -1.7927 37 1 8.1159 8.5648 -1.7239 38 1 9.3873 6.5504 1.6811 39 1 0.8913 -2.5590 -0.4984 40 1 2.5846 -3.1077 -0.4953 41 1 0.7213 -5.9673 0.8868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277627468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:19 Heat of formation + Delta-G solvation = 60.814717 kcal Electronic energy + Delta-G solvation = -24313.097346 eV Core-core repulsion = 20614.878636 eV Total energy + Delta-G solvation = -3698.218710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30661 -41.93012 -40.62148 -36.45636 -35.90596 -35.29478 -33.74992 -33.10535 -32.66780 -31.93226 -28.72708 -27.88339 -27.00509 -25.29837 -24.93349 -23.53727 -22.14832 -21.25191 -20.63562 -18.81417 -18.55039 -18.17670 -17.64858 -17.32038 -17.04542 -16.84388 -16.30315 -16.19281 -15.98769 -15.69275 -15.17069 -14.75598 -14.69487 -14.38819 -14.17095 -13.80957 -13.71459 -13.63886 -13.51537 -13.19849 -13.12461 -12.84787 -12.66455 -12.29795 -12.25093 -12.09588 -11.76007 -11.55045 -11.50459 -11.34216 -10.87670 -10.73477 -10.50104 -10.18333 -9.58176 -9.13321 -8.33399 -6.51006 -0.01471 0.12061 0.92556 1.34292 1.37526 1.39431 1.45297 1.50909 2.22312 2.28622 2.40772 2.84021 2.96221 3.07379 3.33803 3.47495 3.66631 3.86893 4.09690 4.11213 4.17603 4.20317 4.27741 4.45401 4.60761 4.67435 4.71557 4.79773 4.81850 4.89142 4.98029 4.99437 5.00819 5.08536 5.17128 5.27017 5.49261 5.53164 5.80502 5.96095 6.08339 6.26135 6.28984 6.61438 6.99994 7.13987 7.15461 7.19898 8.72466 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.002117 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.821457 B =13225.924660 C =13714.217421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 C -0.298 4.298 4 C 0.272 3.728 5 N -0.627 5.627 6 C 0.522 3.478 7 O -0.546 6.546 8 C -0.112 4.112 9 C -0.052 4.052 10 C 0.167 3.833 11 C -0.218 4.218 12 C 0.143 3.857 13 N -0.548 5.548 14 C 0.285 3.715 15 N -0.538 5.538 16 N -0.361 5.361 17 N -0.343 5.343 18 C 0.275 3.725 19 C -0.552 4.552 20 H 0.048 0.952 21 C 0.022 3.978 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.277 1.277 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.170 0.830 31 H 0.425 0.575 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.214 0.786 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 24.003 -4.350 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.329 4.329 4 C 0.018 3.982 5 N -0.276 5.276 6 C 0.311 3.689 7 O -0.422 6.422 8 C -0.152 4.152 9 C -0.090 4.090 10 C 0.021 3.979 11 C -0.239 4.239 12 C -0.021 4.021 13 N -0.262 5.262 14 C -0.002 4.002 15 N -0.253 5.253 16 N -0.192 5.192 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.067 0.933 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.202 1.202 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.187 0.813 31 H 0.262 0.738 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.215 0.785 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.076 22.907 -3.700 25.712 hybrid contribution -0.602 -0.307 0.229 0.713 sum 10.474 22.600 -3.471 25.150 Atomic orbital electron populations 1.20471 0.85367 1.04226 1.03921 1.21782 0.96683 0.86542 0.99507 1.21454 0.89878 0.99934 1.21638 1.19397 0.89029 0.89218 1.00600 1.42737 1.06868 1.05442 1.72599 1.21433 0.92379 0.80848 0.74273 1.90629 1.28568 1.74105 1.48891 1.21493 0.93988 0.92506 1.07198 1.20321 0.92402 0.90671 1.05641 1.21816 0.93737 0.93107 0.89214 1.23123 1.01403 0.97743 1.01648 1.23819 0.88119 0.95951 0.94253 1.68480 1.32400 1.20392 1.04967 1.25408 0.93297 0.86147 0.95368 1.68249 1.03639 1.27610 1.25792 1.77179 1.00052 1.10227 1.31712 1.48779 1.01808 1.07523 1.54474 1.19241 0.94916 0.72480 0.97758 1.21422 1.47547 0.98355 0.91747 0.93335 1.25734 0.93979 0.95888 1.02277 1.69998 1.45044 1.07402 1.33116 0.85356 0.78972 0.77564 0.78595 1.18896 1.19883 1.20161 0.89884 0.87449 0.91351 0.81316 0.73768 0.86124 0.86509 0.89449 0.87661 0.80680 0.78540 0.77020 0.92982 0.95803 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 2 C 0.09 3.58 6.92 41.39 0.29 3.86 16 3 C -0.30 -11.98 9.52 22.11 0.21 -11.77 16 4 C 0.27 10.87 8.11 133.33 1.08 11.95 16 5 N -0.63 -18.03 5.45 -307.51 -1.68 -19.71 16 6 C 0.52 12.94 7.80 87.65 0.68 13.62 16 7 O -0.55 -16.98 13.11 -3.07 -0.04 -17.02 16 8 C -0.11 -1.68 5.57 29.85 0.17 -1.51 16 9 C -0.05 -0.75 4.94 29.85 0.15 -0.60 16 10 C 0.17 2.38 6.21 42.58 0.26 2.65 16 11 C -0.22 -2.19 9.80 22.44 0.22 -1.97 16 12 C 0.14 1.51 11.30 84.70 0.96 2.47 16 13 N -0.55 -8.37 10.44 -200.05 -2.09 -10.46 16 14 C 0.29 4.28 12.29 180.88 2.22 6.50 16 15 N -0.54 -9.05 10.03 -188.06 -1.89 -10.94 16 16 N -0.36 -16.97 12.59 -54.45 -0.69 -17.65 16 17 N -0.34 -16.67 3.59 -338.44 -1.22 -17.89 16 18 C 0.27 14.60 5.99 85.63 0.51 15.11 16 19 C -0.55 -31.11 9.39 25.60 0.24 -30.87 16 20 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 21 C 0.02 1.22 5.46 84.66 0.46 1.68 16 22 N -0.92 -51.84 13.29 21.45 0.28 -51.55 16 23 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.07 2.32 7.07 -2.38 -0.02 2.30 16 30 H 0.17 6.41 5.92 -2.91 -0.02 6.40 16 31 H 0.42 9.64 8.82 -92.71 -0.82 8.83 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.12 1.66 7.98 -2.38 -0.02 1.64 16 34 H 0.09 1.50 8.10 -2.39 -0.02 1.49 16 35 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 36 H 0.18 0.75 8.01 -2.91 -0.02 0.72 16 37 H 0.20 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.21 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 40 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -74.65 358.40 3.15 -71.50 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.25 Total: 19.39 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 8.17 Total: 9.13 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -7.27 Total: -128.21 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.04 Total: -17.02 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.65 3.15 -71.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277627468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.313 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds