Wall clock time and date at job start Tue Mar 31 2020 10:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38464 * 119.99707 * 2 1 4 4 C 1.39395 * 119.53837 * 359.97438 * 3 2 1 5 5 C 1.36857 * 119.37940 * 179.97438 * 4 3 2 6 6 C 1.40358 * 118.49214 * 0.02562 * 5 4 3 7 7 C 1.47518 * 120.47575 * 179.97438 * 6 5 4 8 8 O 1.21611 * 120.00106 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00092 * 179.97438 * 7 6 5 10 10 C 1.40091 * 120.00325 * 180.02562 * 9 7 6 11 11 C 1.40424 * 125.97363 * 0.32152 * 10 9 7 12 12 C 1.35232 * 107.86568 * 180.16817 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84878 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58490 * 12 11 10 15 15 C 1.46497 * 125.97459 * 180.26213 * 14 12 11 16 16 C 1.50707 * 109.47180 * 90.00273 * 15 14 12 17 17 H 1.08004 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99910 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00109 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46652 * 90.00273 * 20 18 16 22 22 H 1.48502 * 109.47010 * 210.00242 * 20 18 16 23 23 H 1.48500 * 109.46884 * 330.00370 * 20 18 16 24 24 N 1.31229 * 125.97672 * 180.02562 * 10 9 7 25 25 C 1.39565 * 119.04436 * 0.25075 * 6 5 4 26 26 N 1.31678 * 120.52078 * 359.47940 * 25 6 5 27 27 H 1.09003 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47220 * 300.00086 * 1 2 3 29 29 H 1.08999 * 109.47094 * 60.00706 * 1 2 3 30 30 H 0.97000 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.07997 * 120.31277 * 359.96030 * 4 3 2 32 32 H 1.08001 * 120.75262 * 179.97438 * 5 4 3 33 33 H 0.97010 * 119.99638 * 0.02562 * 9 7 6 34 34 H 1.08003 * 126.06924 * 0.03480 * 11 10 9 35 35 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 36 36 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 37 37 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 38 38 H 1.09003 * 109.47259 * 209.99978 * 15 14 12 39 39 H 1.08994 * 109.47368 * 330.00252 * 15 14 12 40 40 H 0.96999 * 120.00072 * 180.02562 * 19 18 16 41 41 H 1.08008 * 119.73812 * 179.74474 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1992 0.0000 4 6 1.4506 2.4007 -0.0005 5 6 2.1381 3.5840 0.0000 6 6 3.5411 3.5433 0.0005 7 6 4.3258 4.7924 0.0005 8 8 3.7575 5.8675 0.0006 9 7 5.6727 4.7421 0.0016 10 6 6.4180 5.9283 0.0021 11 6 5.8946 7.2313 0.0081 12 6 6.9343 8.0961 0.0028 13 6 6.8374 9.6000 0.0030 14 7 8.0741 7.3732 0.0031 15 6 9.4358 7.9135 0.0037 16 6 9.9022 8.0984 1.4247 17 1 9.2494 7.8398 2.2453 18 6 11.1619 8.5988 1.6773 19 7 11.5691 8.7597 2.9174 20 14 12.2908 9.0468 0.2579 21 1 12.0731 10.4668 -0.1183 22 1 13.7044 8.8551 0.6703 23 1 11.9921 8.1748 -0.9063 24 7 7.7273 6.0160 0.0027 25 6 4.1829 2.3040 -0.0048 26 7 3.4833 1.1885 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.9501 -0.8400 0.0004 31 1 0.3706 2.3978 -0.0016 32 1 1.6130 4.5278 -0.0008 33 1 6.1260 3.8844 0.0019 34 1 4.8475 7.4960 0.0136 35 1 6.8145 9.9628 -1.0246 36 1 7.7021 10.0196 0.5173 37 1 5.9257 9.9053 0.5166 38 1 10.1020 7.2203 -0.5100 39 1 9.4455 8.8748 -0.5099 40 1 12.4552 9.1121 3.0951 41 1 5.2621 2.2596 -0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285742722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:47 Heat of formation + Delta-G solvation = 94.149426 kcal Electronic energy + Delta-G solvation = -24633.320570 eV Core-core repulsion = 20936.547361 eV Total energy + Delta-G solvation = -3696.773208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03835 -40.48409 -39.00378 -36.19333 -34.94035 -33.32601 -32.82476 -31.71279 -31.14817 -30.35979 -27.41422 -26.76301 -26.38449 -23.99799 -23.68412 -22.47978 -21.30258 -19.82498 -19.44223 -18.32294 -17.31794 -17.10524 -17.02670 -16.07453 -15.44857 -15.41430 -15.13636 -14.99095 -14.80629 -14.43533 -14.23864 -13.82281 -13.47192 -13.31432 -13.27027 -12.82619 -12.66202 -12.55018 -12.38909 -12.28027 -11.97904 -11.55078 -11.19173 -10.80882 -10.69360 -10.54603 -10.17125 -10.16316 -9.95116 -9.86200 -9.57090 -9.50752 -8.77561 -8.22079 -7.97216 -7.45735 -6.25201 -4.28402 0.60531 1.04945 2.49197 2.66503 2.72608 2.91215 3.15650 3.24118 3.24777 3.53536 3.78962 3.88350 4.17378 4.22529 4.54859 4.56517 4.63835 4.75055 4.88704 4.90771 5.02855 5.13074 5.30305 5.37607 5.62598 5.66836 5.86063 5.88524 6.03870 6.05543 6.21965 6.38319 6.47012 6.50601 6.57384 6.62572 6.77061 7.01508 7.29908 7.40124 7.59746 7.71081 7.87169 8.24770 8.32525 8.58416 8.80608 9.29928 10.87236 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.002366 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.076948 B =11833.874030 C =12381.849337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.722 5.722 3 C 0.419 3.581 4 C -0.246 4.246 5 C 0.029 3.971 6 C -0.244 4.244 7 C 0.577 3.423 8 O -0.518 6.518 9 N -0.628 5.628 10 C 0.269 3.731 11 C -0.286 4.286 12 C 0.094 3.906 13 C -0.091 4.091 14 N -0.317 5.317 15 C 0.232 3.768 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.873 3.127 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.263 1.263 24 N -0.317 5.317 25 C 0.192 3.808 26 N -0.547 5.547 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.409 0.591 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.269 0.731 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 -13.878 -7.971 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.353 5.353 3 C 0.183 3.817 4 C -0.270 4.270 5 C 0.003 3.997 6 C -0.253 4.253 7 C 0.364 3.636 8 O -0.393 6.393 9 N -0.276 5.276 10 C 0.016 3.984 11 C -0.316 4.316 12 C -0.037 4.037 13 C -0.149 4.149 14 N -0.099 5.099 15 C 0.112 3.888 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.523 5.523 20 Si 0.698 3.302 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 N -0.147 5.147 25 C 0.031 3.969 26 N -0.264 5.264 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.243 0.757 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.245 0.755 34 H 0.179 0.821 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.469 -14.453 -7.848 26.258 hybrid contribution 0.103 0.539 -0.463 0.718 sum -20.366 -13.914 -8.311 26.028 Atomic orbital electron populations 1.21687 0.78556 1.03235 1.01837 1.44260 1.06168 1.05504 1.79380 1.18587 0.88431 0.86619 0.88096 1.21109 1.01239 0.91351 1.13332 1.21160 0.92230 0.98825 0.87524 1.20460 0.95017 0.93733 1.16049 1.17821 0.80737 0.88818 0.76238 1.90716 1.70112 1.29837 1.48647 1.42328 1.05489 1.07014 1.72735 1.18926 0.90096 0.86610 1.02730 1.21279 1.00305 0.89249 1.20812 1.21066 0.86376 0.95519 1.00703 1.20406 1.04053 0.87969 1.02453 1.48511 1.06860 1.01378 1.53104 1.19994 0.75040 0.94019 0.99704 1.21185 1.01487 1.44835 0.90394 0.90082 1.24813 0.97278 0.94679 0.95791 1.69876 1.19567 1.44243 1.18626 0.86904 0.80847 0.79555 0.82850 1.19624 1.20516 1.18784 1.77261 1.10518 0.97471 1.29491 1.22690 0.99603 0.86002 0.88572 1.67230 1.05861 1.31499 1.21839 0.90057 0.92174 0.92189 0.75662 0.84430 0.83453 0.75522 0.82078 0.91077 0.89845 0.90343 0.93192 0.93645 0.92132 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 9.90 59.85 0.59 0.88 16 2 N -0.72 -4.53 5.86 -67.23 -0.39 -4.93 16 3 C 0.42 3.89 7.64 -155.28 -1.19 2.70 16 4 C -0.25 -2.10 9.25 -39.65 -0.37 -2.46 16 5 C 0.03 0.29 9.65 -39.28 -0.38 -0.09 16 6 C -0.24 -2.89 5.89 -104.82 -0.62 -3.51 16 7 C 0.58 8.71 7.74 -12.48 -0.10 8.61 16 8 O -0.52 -9.21 13.53 5.27 0.07 -9.14 16 9 N -0.63 -9.93 5.40 -12.08 -0.07 -10.00 16 10 C 0.27 5.48 8.11 -154.44 -1.25 4.22 16 11 C -0.29 -5.85 9.52 -39.83 -0.38 -6.23 16 12 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 13 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 14 N -0.32 -7.37 3.59 -58.33 -0.21 -7.58 16 15 C 0.23 5.58 4.88 -5.19 -0.03 5.56 16 16 C -0.54 -15.17 9.94 -34.44 -0.34 -15.51 16 17 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 20 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 24 N -0.32 -7.25 12.59 31.43 0.40 -6.85 16 25 C 0.19 2.04 10.71 -17.12 -0.18 1.85 16 26 N -0.55 -5.92 10.38 -12.14 -0.13 -6.05 16 27 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 28 H 0.06 0.18 7.91 -51.93 -0.41 -0.23 16 29 H 0.06 0.17 7.91 -51.93 -0.41 -0.24 16 30 H 0.41 2.21 8.95 -40.82 -0.37 1.85 16 31 H 0.14 0.81 6.66 -52.49 -0.35 0.46 16 32 H 0.15 1.41 7.73 -52.49 -0.41 1.01 16 33 H 0.41 5.19 6.87 -40.82 -0.28 4.91 16 34 H 0.16 3.20 5.91 -52.48 -0.31 2.88 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 39 H 0.05 1.00 7.07 -51.93 -0.37 0.64 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.16 1.36 6.41 -52.48 -0.34 1.02 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -35.36 350.17 -8.36 -43.72 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.87 Total: 7.29 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.55 Total: -1.64 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.37 Total: -60.99 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.36 -8.36 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285742722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.868 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds