Wall clock time and date at job start Tue Mar 31 2020 10:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38464 * 119.99707 * 2 1 4 4 C 1.39395 * 119.53837 * 359.97438 * 3 2 1 5 5 C 1.36857 * 119.37940 * 179.97438 * 4 3 2 6 6 C 1.40358 * 118.49214 * 0.02562 * 5 4 3 7 7 C 1.47518 * 120.47575 * 179.97438 * 6 5 4 8 8 O 1.21611 * 120.00106 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00092 * 179.97438 * 7 6 5 10 10 C 1.40091 * 120.00325 * 180.02562 * 9 7 6 11 11 C 1.40424 * 125.97363 * 0.32152 * 10 9 7 12 12 C 1.35232 * 107.86568 * 180.16817 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84878 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58490 * 12 11 10 15 15 C 1.46497 * 125.97459 * 180.26213 * 14 12 11 16 16 C 1.50707 * 109.47180 * 90.00273 * 15 14 12 17 17 H 1.08004 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99910 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00109 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46652 * 90.00273 * 20 18 16 22 22 H 1.48502 * 109.47010 * 210.00242 * 20 18 16 23 23 H 1.48500 * 109.46884 * 330.00370 * 20 18 16 24 24 N 1.31229 * 125.97672 * 180.02562 * 10 9 7 25 25 C 1.39565 * 119.04436 * 0.25075 * 6 5 4 26 26 N 1.31678 * 120.52078 * 359.47940 * 25 6 5 27 27 H 1.09003 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47220 * 300.00086 * 1 2 3 29 29 H 1.08999 * 109.47094 * 60.00706 * 1 2 3 30 30 H 0.97000 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.07997 * 120.31277 * 359.96030 * 4 3 2 32 32 H 1.08001 * 120.75262 * 179.97438 * 5 4 3 33 33 H 0.97010 * 119.99638 * 0.02562 * 9 7 6 34 34 H 1.08003 * 126.06924 * 0.03480 * 11 10 9 35 35 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 36 36 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 37 37 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 38 38 H 1.09003 * 109.47259 * 209.99978 * 15 14 12 39 39 H 1.08994 * 109.47368 * 330.00252 * 15 14 12 40 40 H 0.96999 * 120.00072 * 180.02562 * 19 18 16 41 41 H 1.08008 * 119.73812 * 179.74474 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1992 0.0000 4 6 1.4506 2.4007 -0.0005 5 6 2.1381 3.5840 0.0000 6 6 3.5411 3.5433 0.0005 7 6 4.3258 4.7924 0.0005 8 8 3.7575 5.8675 0.0006 9 7 5.6727 4.7421 0.0016 10 6 6.4180 5.9283 0.0021 11 6 5.8946 7.2313 0.0081 12 6 6.9343 8.0961 0.0028 13 6 6.8374 9.6000 0.0030 14 7 8.0741 7.3732 0.0031 15 6 9.4358 7.9135 0.0037 16 6 9.9022 8.0984 1.4247 17 1 9.2494 7.8398 2.2453 18 6 11.1619 8.5988 1.6773 19 7 11.5691 8.7597 2.9174 20 14 12.2908 9.0468 0.2579 21 1 12.0731 10.4668 -0.1183 22 1 13.7044 8.8551 0.6703 23 1 11.9921 8.1748 -0.9063 24 7 7.7273 6.0160 0.0027 25 6 4.1829 2.3040 -0.0048 26 7 3.4833 1.1885 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.9501 -0.8400 0.0004 31 1 0.3706 2.3978 -0.0016 32 1 1.6130 4.5278 -0.0008 33 1 6.1260 3.8844 0.0019 34 1 4.8475 7.4960 0.0136 35 1 6.8145 9.9628 -1.0246 36 1 7.7021 10.0196 0.5173 37 1 5.9257 9.9053 0.5166 38 1 10.1020 7.2203 -0.5100 39 1 9.4455 8.8748 -0.5099 40 1 12.4552 9.1121 3.0951 41 1 5.2621 2.2596 -0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285742722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:46 Heat of formation + Delta-G solvation = 69.020223 kcal Electronic energy + Delta-G solvation = -24634.410254 eV Core-core repulsion = 20936.547361 eV Total energy + Delta-G solvation = -3697.862892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38735 -41.55707 -40.18028 -36.80564 -36.40202 -35.24774 -33.61928 -33.32062 -32.79470 -31.27204 -29.00555 -27.88945 -27.51662 -25.12114 -24.47922 -24.08654 -22.50025 -21.28785 -20.86760 -19.22251 -19.10695 -18.29284 -18.02459 -17.46942 -16.93576 -16.63869 -16.24632 -16.05857 -15.73248 -15.42966 -15.36296 -15.19454 -14.93228 -14.47815 -14.09842 -14.08305 -13.87887 -13.75678 -13.65616 -13.57925 -13.24791 -12.94544 -12.82438 -12.54777 -12.28136 -11.83537 -11.59824 -11.43766 -11.35460 -11.15469 -10.89586 -10.88422 -10.50461 -9.60559 -9.15796 -8.79632 -8.39513 -6.50766 -0.25393 0.30206 0.98536 1.28403 1.35933 1.41028 1.49581 1.57248 2.13471 2.21728 2.27651 2.31524 2.90474 2.92662 3.42144 3.64020 3.84812 3.87621 3.97308 4.07959 4.12317 4.43296 4.46254 4.55517 4.62055 4.67626 4.75572 4.78718 4.84023 4.90271 4.96367 5.00169 5.10848 5.13611 5.23938 5.27192 5.35718 5.86465 5.92498 6.00240 6.22864 6.37773 6.43967 6.53146 6.93679 7.01444 7.07086 7.13153 8.77111 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.002366 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.076948 B =11833.874030 C =12381.849337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.414 3.586 4 C -0.239 4.239 5 C 0.024 3.976 6 C -0.263 4.263 7 C 0.580 3.420 8 O -0.548 6.548 9 N -0.623 5.623 10 C 0.276 3.724 11 C -0.299 4.299 12 C 0.090 3.910 13 C -0.088 4.088 14 N -0.342 5.342 15 C 0.241 3.759 16 C -0.550 4.550 17 H 0.023 0.977 18 C 0.021 3.979 19 N -0.937 5.937 20 Si 0.952 3.048 21 H -0.250 1.250 22 H -0.279 1.279 23 H -0.245 1.245 24 N -0.355 5.355 25 C 0.196 3.804 26 N -0.566 5.566 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.412 0.588 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.422 0.578 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.273 0.727 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.087 -14.620 -9.980 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.342 5.342 3 C 0.176 3.824 4 C -0.263 4.263 5 C -0.002 4.002 6 C -0.272 4.272 7 C 0.369 3.631 8 O -0.425 6.425 9 N -0.272 5.272 10 C 0.022 3.978 11 C -0.329 4.329 12 C -0.040 4.040 13 C -0.146 4.146 14 N -0.124 5.124 15 C 0.121 3.879 16 C -0.588 4.588 17 H 0.041 0.959 18 C -0.179 4.179 19 N -0.576 5.576 20 Si 0.772 3.228 21 H -0.174 1.174 22 H -0.204 1.204 23 H -0.168 1.168 24 N -0.185 5.185 25 C 0.035 3.965 26 N -0.285 5.285 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.185 0.815 32 H 0.168 0.832 33 H 0.260 0.740 34 H 0.185 0.815 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.014 -15.259 -9.862 28.543 hybrid contribution 0.312 0.568 0.260 0.699 sum -21.702 -14.691 -9.602 27.910 Atomic orbital electron populations 1.21974 0.76453 1.05160 1.02468 1.44534 1.07519 1.04752 1.77403 1.18954 0.88273 0.87973 0.87204 1.21338 1.02578 0.90273 1.12141 1.21290 0.91662 0.99785 0.87468 1.20216 0.95398 0.92390 1.19226 1.18352 0.80221 0.89648 0.74836 1.90678 1.70477 1.31264 1.50128 1.42445 1.05742 1.06333 1.72709 1.19269 0.89714 0.88221 1.00633 1.21478 1.00555 0.89484 1.21398 1.21780 0.85646 0.97447 0.99079 1.20553 1.04382 0.85138 1.04542 1.48440 1.07025 1.01897 1.55070 1.19785 0.75823 0.95217 0.97026 1.21250 1.01262 1.45176 0.91152 0.95864 1.25848 0.98922 0.94061 0.99081 1.70039 1.20454 1.45490 1.21574 0.85669 0.77659 0.80488 0.78955 1.17373 1.20393 1.16798 1.77173 1.11869 0.97838 1.31638 1.22866 1.00350 0.85613 0.87667 1.67302 1.06845 1.31324 1.22992 0.87685 0.91533 0.91396 0.75174 0.81514 0.83166 0.73969 0.81454 0.87935 0.91296 0.88270 0.93227 0.90886 0.91745 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 9.90 127.77 1.27 1.51 16 2 N -0.71 -7.09 5.86 -366.62 -2.15 -9.24 16 3 C 0.41 6.85 7.64 133.25 1.02 7.87 16 4 C -0.24 -3.56 9.25 22.22 0.21 -3.35 16 5 C 0.02 0.46 9.65 22.46 0.22 0.68 16 6 C -0.26 -6.15 5.89 -19.99 -0.12 -6.26 16 7 C 0.58 17.64 7.74 86.69 0.67 18.32 16 8 O -0.55 -19.70 13.53 -4.06 -0.06 -19.76 16 9 N -0.62 -19.99 5.40 -310.39 -1.68 -21.66 16 10 C 0.28 11.44 8.11 133.35 1.08 12.52 16 11 C -0.30 -12.35 9.52 22.11 0.21 -12.14 16 12 C 0.09 3.77 6.92 41.38 0.29 4.06 16 13 C -0.09 -2.84 9.89 71.24 0.70 -2.13 16 14 N -0.34 -16.18 3.59 -338.44 -1.22 -17.39 16 15 C 0.24 11.64 4.88 85.64 0.42 12.06 16 16 C -0.55 -31.91 9.94 25.60 0.25 -31.66 16 17 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 18 C 0.02 1.16 5.47 84.65 0.46 1.63 16 19 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 20 Si 0.95 41.07 27.47 68.60 1.88 42.96 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 24 N -0.35 -16.63 12.59 -54.48 -0.69 -17.32 16 25 C 0.20 4.04 10.71 85.04 0.91 4.95 16 26 N -0.57 -11.55 10.38 -192.31 -2.00 -13.54 16 27 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.07 0.17 7.91 -2.39 -0.02 0.15 16 29 H 0.07 0.15 7.91 -2.39 -0.02 0.13 16 30 H 0.41 3.51 8.95 -92.71 -0.83 2.68 16 31 H 0.17 1.41 6.66 -2.91 -0.02 1.39 16 32 H 0.15 2.78 7.73 -2.91 -0.02 2.75 16 33 H 0.42 10.86 6.87 -92.70 -0.64 10.22 16 34 H 0.17 6.68 5.91 -2.91 -0.02 6.66 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 37 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.05 2.38 7.20 -2.39 -0.02 2.36 16 39 H 0.07 3.10 7.07 -2.39 -0.02 3.08 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.17 2.87 6.41 -2.91 -0.02 2.85 16 Total: -1.00 -80.10 350.17 1.57 -78.53 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.42 Total: 26.53 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 7.59 Total: 8.03 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -7.43 Total: -136.29 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.76 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.96 kcal Total: -80.10 1.57 -78.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285742722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.549 kcal (2) G-P(sol) polarization free energy of solvation -80.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds