Wall clock time and date at job start Tue Mar 31 2020 10:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30523 * 126.34713 * 2 1 4 4 N 1.28595 * 109.67364 * 179.72911 * 3 2 1 5 5 C 1.30522 * 109.67277 * 0.44646 * 4 3 2 6 6 C 1.50698 * 126.34452 * 179.82979 * 5 4 3 7 7 H 1.09006 * 109.46598 * 214.68576 * 6 5 4 8 8 C 1.52999 * 109.47572 * 94.68909 * 6 5 4 9 9 N 1.46491 * 109.47318 * 334.68238 * 6 5 4 10 10 C 1.34775 * 120.00141 * 205.00525 * 9 6 5 11 11 O 1.21583 * 120.00314 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99906 * 180.02562 * 10 9 6 13 13 C 1.39240 * 119.99938 * 184.03033 * 12 10 9 14 14 C 1.39486 * 119.83170 * 324.48925 * 13 12 10 15 15 C 1.36376 * 120.16479 * 179.72204 * 14 13 12 16 16 C 1.40870 * 119.83180 * 0.54862 * 15 14 13 17 17 C 1.41152 * 120.16521 * 179.70221 * 16 15 14 18 18 H 1.07996 * 120.00121 * 214.80597 * 17 16 15 19 19 C 1.39893 * 120.00152 * 34.80458 * 17 16 15 20 20 N 1.30880 * 120.00047 * 355.56283 * 19 17 16 21 21 Si 1.86801 * 120.00026 * 175.55782 * 19 17 16 22 22 H 1.48496 * 109.47045 * 90.00459 * 21 19 17 23 23 H 1.48502 * 109.47035 * 210.00032 * 21 19 17 24 24 H 1.48497 * 109.47141 * 330.00217 * 21 19 17 25 25 C 1.40867 * 119.67071 * 359.72614 * 16 15 14 26 26 C 1.36377 * 119.82819 * 359.97438 * 25 16 15 27 27 N 1.35488 * 126.34690 * 179.97438 * 2 1 3 28 28 H 0.97004 * 126.98487 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47048 * 270.00495 * 1 2 3 30 30 H 1.09003 * 109.46876 * 30.00328 * 1 2 3 31 31 H 1.09003 * 109.47110 * 150.00242 * 1 2 3 32 32 H 1.08997 * 109.47045 * 59.99190 * 8 6 5 33 33 H 1.08992 * 109.47564 * 179.97438 * 8 6 5 34 34 H 1.09006 * 109.47057 * 300.00017 * 8 6 5 35 35 H 0.97003 * 119.99754 * 25.00684 * 9 6 5 36 36 H 0.97001 * 119.99903 * 4.29676 * 12 10 9 37 37 H 1.07992 * 119.91391 * 0.02562 * 14 13 12 38 38 H 1.07998 * 120.08356 * 180.27426 * 15 14 13 39 39 H 0.97000 * 120.00075 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.08556 * 179.97438 * 25 16 15 41 41 H 1.08007 * 119.91265 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5124 0.6823 0.0057 5 6 3.5808 -0.6211 0.0001 6 6 4.8397 -1.4494 0.0002 7 1 4.6804 -2.3524 -0.5892 8 6 5.1966 -1.8348 1.4372 9 7 5.9357 -0.6723 -0.5835 10 6 6.9827 -1.3041 -1.1501 11 8 7.0179 -2.5191 -1.1763 12 7 7.9913 -0.5890 -1.6867 13 6 9.0316 -1.2387 -2.3459 14 6 9.4783 -2.4774 -1.8857 15 6 10.4929 -3.1224 -2.5295 16 6 11.0977 -2.5292 -3.6550 17 6 12.1525 -3.1876 -4.3230 18 1 12.9570 -2.6141 -4.7590 19 6 12.1559 -4.5832 -4.4202 20 7 11.2284 -5.2833 -3.8181 21 14 13.4841 -5.4474 -5.4094 22 1 14.6380 -5.7542 -4.5266 23 1 12.9406 -6.7103 -5.9705 24 1 13.9294 -4.5646 -6.5173 25 6 10.6448 -1.2754 -4.1103 26 6 9.6252 -0.6453 -3.4598 27 7 2.3100 -1.0913 0.0005 28 1 2.0318 -2.0206 0.0006 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.3811 -2.4130 1.8715 33 1 6.1068 -2.4343 1.4373 34 1 5.3558 -0.9318 2.0267 35 1 5.9078 0.2971 -0.5623 36 1 7.9945 0.3780 -1.6103 37 1 9.0163 -2.9290 -1.0203 38 1 10.8347 -4.0834 -2.1747 39 1 11.2309 -6.2510 -3.8852 40 1 11.1040 -0.8143 -4.9723 41 1 9.2772 0.3163 -3.8075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287127903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:01 Heat of formation + Delta-G solvation = 45.821832 kcal Electronic energy + Delta-G solvation = -24853.228569 eV Core-core repulsion = 21154.359719 eV Total energy + Delta-G solvation = -3698.868850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.28222 -41.46938 -39.33522 -37.09703 -36.01595 -35.03558 -34.71561 -33.26283 -31.62781 -31.31246 -30.31296 -28.55562 -26.79243 -25.22874 -23.43343 -23.08424 -22.93816 -21.85602 -21.30582 -19.79758 -19.19512 -18.77289 -18.19630 -17.26922 -17.04822 -16.79900 -16.18597 -15.95779 -15.70281 -15.02079 -14.98715 -14.89276 -14.50623 -14.27837 -13.94094 -13.67419 -13.58281 -13.48672 -13.29091 -13.20973 -12.86683 -12.81381 -12.63545 -12.49487 -12.28611 -11.92191 -11.78218 -11.68495 -11.48390 -11.32070 -10.91111 -10.54329 -10.38254 -10.08359 -9.40516 -8.68780 -8.46148 -6.28775 0.65202 0.88661 1.17365 1.35207 1.40303 1.48906 1.55728 1.69712 1.95906 2.16999 2.26251 2.85294 2.97267 3.33084 3.64880 3.73282 3.83974 4.02048 4.07305 4.37559 4.46747 4.51121 4.57205 4.70401 4.73686 4.78660 4.93484 5.02432 5.11978 5.14232 5.17977 5.19779 5.35674 5.37355 5.46579 5.72181 5.81225 6.10814 6.11930 6.17401 6.19589 6.41180 6.75214 7.00044 7.06526 7.07981 7.56721 7.63002 8.46793 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.002330 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.845932 B =12014.739104 C =12323.228932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.193 3.807 3 N -0.339 5.339 4 N -0.315 5.315 5 C 0.172 3.828 6 C 0.255 3.745 7 H 0.103 0.897 8 C -0.153 4.153 9 N -0.722 5.722 10 C 0.701 3.299 11 O -0.615 6.615 12 N -0.658 5.658 13 C 0.041 3.959 14 C -0.106 4.106 15 C -0.166 4.166 16 C 0.063 3.937 17 C -0.496 4.496 18 H 0.078 0.922 19 C 0.022 3.978 20 N -0.847 5.847 21 Si 0.990 3.010 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.208 4.208 26 C -0.111 4.111 27 N -0.560 5.560 28 H 0.448 0.552 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.414 0.586 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.281 0.719 40 H 0.111 0.889 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.266 6.524 8.773 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 N -0.180 5.180 4 N -0.155 5.155 5 C -0.099 4.099 6 C 0.147 3.853 7 H 0.121 0.879 8 C -0.212 4.212 9 N -0.380 5.380 10 C 0.401 3.599 11 O -0.495 6.495 12 N -0.306 5.306 13 C -0.053 4.053 14 C -0.126 4.126 15 C -0.186 4.186 16 C 0.061 3.939 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.475 5.475 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.228 4.228 26 C -0.131 4.131 27 N -0.175 5.175 28 H 0.291 0.709 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.898 6.828 8.794 22.801 hybrid contribution 0.142 -1.479 -0.346 1.525 sum -19.756 5.350 8.448 22.143 Atomic orbital electron populations 1.20510 0.79996 1.06237 1.05827 1.25733 0.98697 0.82134 1.01086 1.74197 0.96505 1.26049 1.21237 1.74037 1.13368 1.08956 1.19168 1.24561 0.87813 0.92541 1.04997 1.18838 0.78498 0.91291 0.96684 0.87930 1.22159 1.03257 1.02481 0.93286 1.44746 1.19789 1.10610 1.62856 1.15988 0.80234 0.85153 0.78503 1.90920 1.80364 1.13346 1.64829 1.41859 1.20891 1.10000 1.57806 1.17107 0.94540 0.96113 0.97501 1.20676 0.96512 0.95478 0.99945 1.21174 0.99638 1.00909 0.96884 1.18064 0.93148 0.92058 0.90663 1.19733 1.07777 0.92339 1.32883 0.90381 1.26826 0.98109 0.98267 0.95746 1.69911 1.32344 1.08214 1.37045 0.85085 0.77642 0.77512 0.78681 1.18720 1.19759 1.18065 1.20930 1.01259 0.98444 1.02199 1.20406 0.98216 1.00510 0.93966 1.43734 1.05275 1.12303 1.56205 0.70860 0.87559 0.88291 0.87515 0.89070 0.91975 0.91530 0.74935 0.74873 0.88093 0.87616 0.90810 0.87058 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.19 2.95 8.30 137.98 1.14 4.10 16 3 N -0.34 -8.26 12.21 -50.16 -0.61 -8.87 16 4 N -0.31 -8.09 11.49 -50.15 -0.58 -8.66 16 5 C 0.17 3.51 7.25 137.98 1.00 4.51 16 6 C 0.26 5.58 3.12 44.25 0.14 5.72 16 7 H 0.10 2.37 7.58 -2.38 -0.02 2.35 16 8 C -0.15 -2.91 9.47 71.98 0.68 -2.23 16 9 N -0.72 -18.78 5.07 -461.43 -2.34 -21.12 16 10 C 0.70 24.60 8.36 179.05 1.50 26.09 16 11 O -0.61 -27.00 13.44 -3.98 -0.05 -27.05 16 12 N -0.66 -22.71 5.31 -316.78 -1.68 -24.39 16 13 C 0.04 1.83 6.30 38.57 0.24 2.07 16 14 C -0.11 -5.44 8.61 22.14 0.19 -5.25 16 15 C -0.17 -9.38 8.62 22.48 0.19 -9.19 16 16 C 0.06 3.51 5.55 -21.28 -0.12 3.40 16 17 C -0.50 -27.51 9.02 23.39 0.21 -27.30 16 18 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 19 C 0.02 1.14 5.42 85.24 0.46 1.61 16 20 N -0.85 -47.38 10.60 21.82 0.23 -47.15 16 21 Si 0.99 40.15 29.56 68.60 2.03 42.18 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 26 C -0.11 -4.72 9.90 22.13 0.22 -4.50 16 27 N -0.56 -7.45 6.20 -177.96 -1.10 -8.55 16 28 H 0.45 2.42 8.96 -92.70 -0.83 1.59 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.41 9.55 8.05 -92.71 -0.75 8.80 16 36 H 0.41 10.83 8.83 -92.71 -0.82 10.01 16 37 H 0.10 5.27 6.24 -2.91 -0.02 5.25 16 38 H 0.11 6.39 6.13 -2.91 -0.02 6.37 16 39 H 0.28 14.41 8.30 -92.71 -0.77 13.65 16 40 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -78.23 352.27 1.44 -76.80 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -1.29 Total: 37.28 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 6.83 Total: -10.45 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -6.08 Total: -118.75 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -78.23 1.44 -76.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287127903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.619 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds