Wall clock time and date at job start Tue Mar 31 2020 10:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.41271 * 2 1 4 4 C 1.38620 * 118.52104 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.41132 * 180.02562 * 4 3 2 6 6 N 1.32279 * 119.17260 * 0.02562 * 4 3 2 7 7 C 1.32342 * 120.76100 * 359.97438 * 6 4 3 8 8 N 1.39391 * 119.19544 * 180.02562 * 7 6 4 9 9 N 1.40078 * 126.12289 * 359.97438 * 8 7 6 10 10 C 1.30802 * 108.42847 * 180.02562 * 9 8 7 11 11 C 1.39843 * 108.51725 * 359.74400 * 10 9 8 12 12 C 1.36059 * 107.88009 * 0.42150 * 11 10 9 13 13 N 1.39375 * 126.28927 * 179.85096 * 12 11 10 14 14 C 1.34777 * 120.00002 * 359.68652 * 13 12 11 15 15 O 1.21292 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00137 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47303 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99749 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00349 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 N 1.32273 * 120.40971 * 180.30226 * 2 1 3 27 27 H 1.09009 * 109.47223 * 89.99568 * 1 2 3 28 28 H 1.09000 * 109.47524 * 209.99698 * 1 2 3 29 29 H 1.08996 * 109.47115 * 330.00018 * 1 2 3 30 30 H 1.08000 * 120.73777 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.47232 * 269.97556 * 5 4 3 32 32 H 1.08995 * 109.47530 * 29.98108 * 5 4 3 33 33 H 1.09008 * 109.46880 * 149.98243 * 5 4 3 34 34 H 1.08006 * 125.74468 * 179.97438 * 10 9 8 35 35 H 1.07998 * 126.05922 * 180.27691 * 11 10 9 36 36 H 0.96999 * 119.99951 * 179.69230 * 13 12 11 37 37 H 1.09000 * 109.46978 * 300.00347 * 16 14 13 38 38 H 1.08996 * 109.47197 * 59.99985 * 16 14 13 39 39 H 1.09000 * 109.46986 * 299.99851 * 17 16 14 40 40 H 1.08996 * 109.47407 * 59.99623 * 17 16 14 41 41 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1955 0.0000 4 6 3.5942 1.1497 -0.0005 5 6 4.3995 2.4235 0.0000 6 7 4.2005 -0.0259 -0.0016 7 6 3.5000 -1.1487 -0.0015 8 7 4.1725 -2.3697 -0.0021 9 7 5.5620 -2.5471 -0.0032 10 6 5.8150 -3.8304 -0.0040 11 6 4.5999 -4.5226 0.0025 12 6 3.5960 -3.6043 -0.0022 13 7 2.2291 -3.8765 -0.0013 14 6 1.7961 -5.1528 -0.0016 15 8 2.5960 -6.0646 -0.0022 16 6 0.3181 -5.4472 -0.0012 17 6 0.0997 -6.9615 -0.0010 18 6 -1.3783 -7.2557 -0.0012 19 1 -2.0906 -6.4439 -0.0010 20 6 -1.8213 -8.5615 -0.0016 21 7 -0.9539 -9.5501 -0.0023 22 14 -3.6533 -8.9262 -0.0011 23 1 -4.1393 -9.0223 -1.4011 24 1 -3.9018 -10.2123 0.6984 25 1 -4.3753 -7.8341 0.6996 26 7 2.1765 -1.1407 -0.0060 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6876 2.1415 0.0004 31 1 4.5937 2.7311 -1.0276 32 1 3.8415 3.2059 0.5143 33 1 5.3460 2.2546 0.5137 34 1 6.7971 -4.2799 -0.0053 35 1 4.4797 -5.5959 0.0078 36 1 1.5894 -3.1474 -0.0005 37 1 -0.1382 -5.0144 0.8891 38 1 -0.1389 -5.0139 -0.8908 39 1 0.5561 -7.3946 -0.8911 40 1 0.5566 -7.3945 0.8889 41 1 -1.2656 -10.4686 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291436987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:01 Heat of formation + Delta-G solvation = 98.300194 kcal Electronic energy + Delta-G solvation = -25270.609943 eV Core-core repulsion = 21574.016725 eV Total energy + Delta-G solvation = -3696.593218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07479 -40.99585 -39.21121 -35.42523 -34.83643 -34.34889 -33.55921 -31.27186 -31.12354 -29.91878 -28.92924 -27.90613 -25.83306 -24.68436 -22.91658 -22.22648 -21.17202 -20.60000 -19.50131 -18.64533 -17.91614 -16.83443 -16.42445 -16.12917 -15.76116 -15.49994 -15.31205 -14.51466 -14.50054 -14.41183 -13.91620 -13.84928 -13.72225 -13.40817 -13.01541 -12.98715 -12.93924 -12.55500 -12.54874 -12.24653 -11.49559 -11.23992 -10.98934 -10.83547 -10.80061 -10.77181 -10.62282 -10.50534 -10.04863 -9.72196 -9.67864 -9.30710 -9.14414 -8.84583 -8.36916 -8.03287 -6.00420 -4.05185 0.26474 0.62115 1.59516 1.80639 2.74876 3.16535 3.18413 3.30938 3.37149 3.37521 3.39667 3.43420 3.85612 4.04327 4.43752 4.56285 4.64164 4.76575 4.88209 5.03321 5.07895 5.09962 5.14057 5.32367 5.34892 5.37304 5.52311 5.58735 5.61593 5.82946 6.04328 6.08148 6.14899 6.22031 6.48336 6.73539 6.80203 6.99400 7.33398 7.54977 7.68611 7.77684 7.92530 8.00514 8.29742 8.47597 9.02268 9.58620 11.10497 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.003064 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.137391 B = 9135.092850 C =10757.177301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.217 3.783 3 C -0.257 4.257 4 C 0.209 3.791 5 C -0.106 4.106 6 N -0.517 5.517 7 C 0.581 3.419 8 N -0.337 5.337 9 N -0.269 5.269 10 C 0.084 3.916 11 C -0.279 4.279 12 C 0.341 3.659 13 N -0.650 5.650 14 C 0.512 3.488 15 O -0.499 6.499 16 C -0.122 4.122 17 C 0.037 3.963 18 C -0.529 4.529 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.888 5.888 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 N -0.561 5.561 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.187 0.813 36 H 0.423 0.577 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 25.357 -0.017 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.072 3.928 3 C -0.280 4.280 4 C 0.062 3.938 5 C -0.164 4.164 6 N -0.236 5.236 7 C 0.227 3.773 8 N -0.123 5.123 9 N -0.087 5.087 10 C -0.106 4.106 11 C -0.311 4.311 12 C 0.125 3.875 13 N -0.302 5.302 14 C 0.302 3.698 15 O -0.370 6.370 16 C -0.162 4.162 17 C -0.001 4.001 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 N -0.284 5.284 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.214 0.786 35 H 0.204 0.796 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.573 24.779 -0.016 26.220 hybrid contribution -1.996 0.095 -0.034 1.998 sum 6.578 24.874 -0.050 25.729 Atomic orbital electron populations 1.20901 0.86646 1.04863 1.04438 1.21553 0.97460 0.86575 0.87247 1.22500 0.95443 1.00583 1.09499 1.21699 0.91493 0.93079 0.87508 1.20824 1.00394 0.91095 1.04042 1.67717 1.40557 0.97048 1.18305 1.18429 0.84120 0.84293 0.90484 1.45386 1.05401 1.00431 1.61052 1.77822 0.85754 1.18293 1.26810 1.24218 1.00164 0.90454 0.95738 1.21914 0.89048 1.01780 1.18314 1.18516 0.86260 0.84238 0.98452 1.43983 1.02908 1.11207 1.72125 1.21993 0.93597 0.80010 0.74227 1.90602 1.56518 1.44275 1.45606 1.21918 0.86761 1.04406 1.03152 1.18948 0.96624 0.85593 0.98936 1.21170 0.91709 0.92069 1.51752 0.92502 1.25019 0.97696 0.96399 0.95209 1.69989 1.33639 0.99119 1.49916 0.86577 0.85435 0.77766 0.78085 1.20652 1.21198 1.19873 1.67151 1.07096 1.32287 1.21844 0.88893 0.89219 0.89415 0.82855 0.89263 0.89668 0.89536 0.78570 0.79626 0.73546 0.89565 0.89557 0.95528 0.95518 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.22 36.00 0.37 -0.28 16 2 C 0.22 2.05 6.82 -82.26 -0.56 1.49 16 3 C -0.26 -2.00 9.53 -39.30 -0.37 -2.38 16 4 C 0.21 2.03 6.82 -82.26 -0.56 1.47 16 5 C -0.11 -0.60 10.22 36.00 0.37 -0.24 16 6 N -0.52 -7.19 10.18 -9.97 -0.10 -7.29 16 7 C 0.58 8.87 8.45 -321.74 -2.72 6.15 16 8 N -0.34 -5.67 3.80 -12.87 -0.05 -5.71 16 9 N -0.27 -4.38 12.34 30.61 0.38 -4.01 16 10 C 0.08 1.19 12.00 -17.39 -0.21 0.98 16 11 C -0.28 -4.68 9.65 -39.76 -0.38 -5.07 16 12 C 0.34 5.94 7.61 -152.37 -1.16 4.78 16 13 N -0.65 -10.92 5.35 -11.27 -0.06 -10.98 16 14 C 0.51 9.94 7.79 -10.99 -0.09 9.85 16 15 O -0.50 -11.16 13.12 5.55 0.07 -11.09 16 16 C -0.12 -2.40 5.64 -27.88 -0.16 -2.56 16 17 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 18 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 N -0.56 -7.34 7.59 -9.97 -0.08 -7.42 16 27 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.20 1.89 8.06 -52.48 -0.42 1.46 16 35 H 0.19 3.34 5.83 -52.49 -0.31 3.03 16 36 H 0.42 6.26 6.27 -40.82 -0.26 6.00 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -36.06 355.62 -9.93 -45.99 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.17 Total: 3.31 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -6.00 Total: 1.73 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.83 Total: -61.52 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.06 -9.93 -45.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291436987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.290 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds