Wall clock time and date at job start Tue Mar 31 2020 10:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.41271 * 2 1 4 4 C 1.38620 * 118.52104 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.41132 * 180.02562 * 4 3 2 6 6 N 1.32279 * 119.17260 * 0.02562 * 4 3 2 7 7 C 1.32342 * 120.76100 * 359.97438 * 6 4 3 8 8 N 1.39391 * 119.19544 * 180.02562 * 7 6 4 9 9 N 1.40078 * 126.12289 * 359.97438 * 8 7 6 10 10 C 1.30802 * 108.42847 * 180.02562 * 9 8 7 11 11 C 1.39843 * 108.51725 * 359.74400 * 10 9 8 12 12 C 1.36059 * 107.88009 * 0.42150 * 11 10 9 13 13 N 1.39375 * 126.28927 * 179.85096 * 12 11 10 14 14 C 1.34777 * 120.00002 * 359.68652 * 13 12 11 15 15 O 1.21292 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00137 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47303 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99749 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47117 * 90.00349 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 N 1.32273 * 120.40971 * 180.30226 * 2 1 3 27 27 H 1.09009 * 109.47223 * 89.99568 * 1 2 3 28 28 H 1.09000 * 109.47524 * 209.99698 * 1 2 3 29 29 H 1.08996 * 109.47115 * 330.00018 * 1 2 3 30 30 H 1.08000 * 120.73777 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.47232 * 269.97556 * 5 4 3 32 32 H 1.08995 * 109.47530 * 29.98108 * 5 4 3 33 33 H 1.09008 * 109.46880 * 149.98243 * 5 4 3 34 34 H 1.08006 * 125.74468 * 179.97438 * 10 9 8 35 35 H 1.07998 * 126.05922 * 180.27691 * 11 10 9 36 36 H 0.96999 * 119.99951 * 179.69230 * 13 12 11 37 37 H 1.09000 * 109.46978 * 300.00347 * 16 14 13 38 38 H 1.08996 * 109.47197 * 59.99985 * 16 14 13 39 39 H 1.09000 * 109.46986 * 299.99851 * 17 16 14 40 40 H 1.08996 * 109.47407 * 59.99623 * 17 16 14 41 41 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1955 0.0000 4 6 3.5942 1.1497 -0.0005 5 6 4.3995 2.4235 0.0000 6 7 4.2005 -0.0259 -0.0016 7 6 3.5000 -1.1487 -0.0015 8 7 4.1725 -2.3697 -0.0021 9 7 5.5620 -2.5471 -0.0032 10 6 5.8150 -3.8304 -0.0040 11 6 4.5999 -4.5226 0.0025 12 6 3.5960 -3.6043 -0.0022 13 7 2.2291 -3.8765 -0.0013 14 6 1.7961 -5.1528 -0.0016 15 8 2.5960 -6.0646 -0.0022 16 6 0.3181 -5.4472 -0.0012 17 6 0.0997 -6.9615 -0.0010 18 6 -1.3783 -7.2557 -0.0012 19 1 -2.0906 -6.4439 -0.0010 20 6 -1.8213 -8.5615 -0.0016 21 7 -0.9539 -9.5501 -0.0023 22 14 -3.6533 -8.9262 -0.0011 23 1 -4.1393 -9.0223 -1.4011 24 1 -3.9018 -10.2123 0.6984 25 1 -4.3753 -7.8341 0.6996 26 7 2.1765 -1.1407 -0.0060 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6876 2.1415 0.0004 31 1 4.5937 2.7311 -1.0276 32 1 3.8415 3.2059 0.5143 33 1 5.3460 2.2546 0.5137 34 1 6.7971 -4.2799 -0.0053 35 1 4.4797 -5.5959 0.0078 36 1 1.5894 -3.1474 -0.0005 37 1 -0.1382 -5.0144 0.8891 38 1 -0.1389 -5.0139 -0.8908 39 1 0.5561 -7.3946 -0.8911 40 1 0.5566 -7.3945 0.8889 41 1 -1.2656 -10.4686 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291436987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:00 Heat of formation + Delta-G solvation = 76.740997 kcal Electronic energy + Delta-G solvation = -25271.544820 eV Core-core repulsion = 21574.016725 eV Total energy + Delta-G solvation = -3697.528095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.14984 -41.97831 -40.71582 -36.40295 -35.84842 -35.64280 -35.37621 -33.14267 -32.14626 -30.69140 -30.19660 -28.42802 -27.74420 -25.70234 -24.41739 -23.41241 -22.16907 -21.98717 -20.95854 -19.84810 -18.86183 -18.62408 -17.50709 -17.47802 -16.98381 -16.67351 -16.53875 -16.42923 -15.64525 -15.43006 -15.19246 -14.75762 -14.38358 -14.37888 -14.30832 -14.15924 -14.11407 -13.55193 -13.35745 -13.27430 -13.01974 -12.82762 -12.49294 -12.26288 -12.25121 -12.02398 -11.95518 -11.62686 -11.55806 -11.39792 -11.28919 -10.94084 -10.54754 -10.49396 -9.80366 -9.36805 -8.16528 -6.29990 -0.65559 -0.10780 0.50267 0.64013 1.44542 1.45073 1.46849 1.57565 1.83069 1.84769 2.44778 2.53982 2.56545 3.05492 3.17279 3.36266 3.66788 3.72473 3.96534 4.09871 4.15605 4.36804 4.40267 4.44106 4.47898 4.61530 4.69447 4.75003 4.76334 4.86415 4.92690 4.94666 5.02004 5.18994 5.33657 5.50055 5.51383 5.61999 5.62028 5.85604 5.98551 6.13623 6.17534 6.37763 6.85597 6.89829 6.99588 7.39996 8.96069 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.003064 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.137391 B = 9135.092850 C =10757.177301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.201 3.799 3 C -0.232 4.232 4 C 0.190 3.810 5 C -0.102 4.102 6 N -0.546 5.546 7 C 0.544 3.456 8 N -0.342 5.342 9 N -0.286 5.286 10 C 0.095 3.905 11 C -0.294 4.294 12 C 0.321 3.679 13 N -0.634 5.634 14 C 0.516 3.484 15 O -0.538 6.538 16 C -0.109 4.109 17 C 0.042 3.958 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.254 1.254 26 N -0.577 5.577 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.201 0.799 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.170 0.830 36 H 0.432 0.568 37 H 0.113 0.887 38 H 0.113 0.887 39 H -0.012 1.012 40 H -0.011 1.011 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 28.993 -0.016 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.056 3.944 3 C -0.254 4.254 4 C 0.045 3.955 5 C -0.159 4.159 6 N -0.266 5.266 7 C 0.190 3.810 8 N -0.128 5.128 9 N -0.104 5.104 10 C -0.094 4.094 11 C -0.325 4.325 12 C 0.105 3.895 13 N -0.286 5.286 14 C 0.306 3.694 15 O -0.412 6.412 16 C -0.148 4.148 17 C 0.005 3.995 18 C -0.579 4.579 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.178 1.178 26 N -0.301 5.301 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.218 0.782 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.187 0.813 36 H 0.276 0.724 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.408 28.528 -0.015 29.239 hybrid contribution -1.298 -0.861 -0.037 1.558 sum 5.110 27.667 -0.052 28.135 Atomic orbital electron populations 1.21056 0.83945 1.06048 1.05487 1.22339 0.99116 0.86269 0.86647 1.23020 0.94669 1.01892 1.05823 1.22494 0.93093 0.92919 0.86996 1.20962 0.99870 0.89944 1.05108 1.67691 1.41749 0.97951 1.19199 1.18627 0.85054 0.84189 0.93174 1.45468 1.05331 1.00868 1.61104 1.77736 0.86202 1.19249 1.27245 1.24783 1.01003 0.89460 0.94191 1.21924 0.90423 1.01242 1.18921 1.18618 0.86278 0.85155 0.99452 1.43612 1.03250 1.10439 1.71337 1.21854 0.93291 0.80432 0.73837 1.90604 1.57306 1.45651 1.47682 1.21677 0.87411 1.00081 1.05677 1.18722 0.95802 0.89675 0.95351 1.21674 0.92606 0.92843 1.50812 0.90358 1.26103 1.03224 0.96315 0.94696 1.70167 1.36415 0.99639 1.51407 0.85342 0.78787 0.77794 0.78457 1.19811 1.21399 1.17796 1.67128 1.06324 1.34288 1.22343 0.87703 0.90038 0.86235 0.78176 0.88020 0.86283 0.90680 0.74503 0.81251 0.72397 0.86927 0.86912 0.99308 0.99284 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.22 71.24 0.73 -0.17 16 2 C 0.20 3.30 6.82 42.58 0.29 3.59 16 3 C -0.23 -2.79 9.53 22.45 0.21 -2.58 16 4 C 0.19 3.29 6.82 42.58 0.29 3.58 16 5 C -0.10 -0.87 10.22 71.23 0.73 -0.14 16 6 N -0.55 -15.00 10.18 -185.45 -1.89 -16.89 16 7 C 0.54 16.69 8.45 261.11 2.21 18.90 16 8 N -0.34 -11.79 3.80 -194.64 -0.74 -12.53 16 9 N -0.29 -9.50 12.34 -57.06 -0.70 -10.20 16 10 C 0.09 2.73 12.00 85.23 1.02 3.75 16 11 C -0.29 -10.32 9.65 22.15 0.21 -10.10 16 12 C 0.32 11.59 7.61 131.02 1.00 12.58 16 13 N -0.63 -21.71 5.35 -307.95 -1.65 -23.35 16 14 C 0.52 20.64 7.79 87.66 0.68 21.33 16 15 O -0.54 -25.56 13.12 -3.07 -0.04 -25.60 16 16 C -0.11 -4.26 5.64 29.85 0.17 -4.09 16 17 C 0.04 2.27 4.26 29.85 0.13 2.40 16 18 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 20 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 21 N -0.94 -58.39 13.29 21.45 0.28 -58.10 16 22 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 26 N -0.58 -14.71 7.59 -185.45 -1.41 -16.11 16 27 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 0.23 8.09 -2.39 -0.02 0.21 16 30 H 0.20 0.41 8.06 -2.91 -0.02 0.39 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.12 0.20 8.09 -2.39 -0.02 0.18 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.17 6.55 5.83 -2.91 -0.02 6.53 16 36 H 0.43 12.73 6.27 -92.71 -0.58 12.15 16 37 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 39 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 40 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 41 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -84.15 355.62 4.74 -79.42 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.49 Total: 18.44 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 8.36 Total: 19.54 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -6.10 Total: -137.19 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.04 Total: -25.60 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -84.15 4.74 -79.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291436987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.158 kcal (2) G-P(sol) polarization free energy of solvation -84.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds