Wall clock time and date at job start Tue Mar 31 2020 10:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46840 * 2 1 4 4 N 1.30753 * 126.36178 * 85.15567 * 3 2 1 5 5 N 1.28432 * 110.64200 * 180.02562 * 4 3 2 6 6 N 1.28948 * 110.19807 * 359.97438 * 5 4 3 7 7 N 1.35047 * 126.36197 * 265.18921 * 3 2 1 8 8 C 1.40296 * 127.38411 * 0.02562 * 7 3 2 9 9 C 1.38701 * 120.10007 * 311.77529 * 8 7 3 10 10 C 1.38170 * 120.00525 * 179.75085 * 9 8 7 11 11 C 1.38326 * 120.20282 * 0.55459 * 10 9 8 12 12 C 1.38149 * 120.19002 * 359.70086 * 11 10 9 13 13 C 1.38765 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.39955 * 120.10243 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99925 * 340.02949 * 14 13 12 16 16 O 1.21292 * 120.00039 * 354.87880 * 15 14 13 17 17 C 1.50699 * 119.99840 * 174.88145 * 15 14 13 18 18 C 1.53000 * 109.47149 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47149 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00079 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99695 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99640 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46925 * 90.00197 * 23 21 19 25 25 H 1.48497 * 109.47222 * 209.99903 * 23 21 19 26 26 H 1.48497 * 109.47174 * 330.00225 * 23 21 19 27 27 H 1.09005 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47285 * 300.00017 * 1 2 3 29 29 H 1.09007 * 109.47250 * 60.00353 * 1 2 3 30 30 H 1.09000 * 109.47184 * 239.99925 * 2 1 3 31 31 H 1.08994 * 109.47247 * 120.00007 * 2 1 3 32 32 H 1.08006 * 119.99497 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.89868 * 180.27760 * 10 9 8 34 34 H 1.07995 * 119.90345 * 179.72847 * 11 10 9 35 35 H 1.08002 * 119.99967 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99954 * 160.02506 * 14 13 12 37 37 H 1.08998 * 109.47513 * 299.99584 * 17 15 14 38 38 H 1.08994 * 109.47466 * 59.99844 * 17 15 14 39 39 H 1.09005 * 109.47153 * 299.99892 * 18 17 15 40 40 H 1.08998 * 109.47469 * 59.99888 * 18 17 15 41 41 H 0.97001 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2068 2.1814 1.0492 5 7 2.6460 3.3373 0.7024 6 7 2.7821 3.3960 -0.5785 7 7 2.3851 2.1453 -1.0837 8 6 2.3603 1.7376 -2.4259 9 6 2.9149 0.5207 -2.7936 10 6 2.8848 0.1187 -4.1152 11 6 2.3127 0.9319 -5.0769 12 6 1.7626 2.1480 -4.7207 13 6 1.7833 2.5572 -3.3949 14 7 1.2271 3.7890 -3.0317 15 6 1.0398 4.7447 -3.9633 16 8 1.4374 4.5735 -5.0963 17 6 0.3362 6.0261 -3.5972 18 6 0.2548 6.9326 -4.8271 19 6 -0.4481 8.2143 -4.4609 20 1 -0.8019 8.3669 -3.4520 21 6 -0.6397 9.1920 -5.4140 22 7 -1.2536 10.3104 -5.0945 23 14 -0.0272 8.9283 -7.1589 24 1 -1.0937 8.2823 -7.9655 25 1 0.3254 10.2382 -7.7631 26 1 1.1734 8.0548 -7.1355 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.3665 -0.1148 -2.0460 33 1 3.3132 -0.8312 -4.3989 34 1 2.2957 0.6149 -6.1092 35 1 1.3163 2.7802 -5.4741 36 1 0.9763 3.9549 -2.1094 37 1 -0.6705 5.8004 -3.2456 38 1 0.8916 6.5329 -2.8081 39 1 1.2614 7.1585 -5.1793 40 1 -0.3008 6.4256 -5.6160 41 1 -1.3880 10.9984 -5.7649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291486702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:49 Heat of formation + Delta-G solvation = 86.155706 kcal Electronic energy + Delta-G solvation = -25716.009741 eV Core-core repulsion = 22018.889898 eV Total energy + Delta-G solvation = -3697.119842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41873 -41.91181 -39.95261 -36.57167 -36.21994 -35.65323 -35.08913 -33.51202 -32.12067 -31.42600 -30.72609 -28.11986 -26.31000 -25.36369 -24.49053 -23.66038 -22.63875 -22.17337 -21.41130 -19.79878 -19.19078 -18.64224 -18.04384 -17.51146 -16.96470 -16.53071 -16.32025 -16.09365 -15.99174 -15.44274 -15.37011 -14.99187 -14.79850 -14.69470 -14.48438 -14.12351 -13.71126 -13.67399 -13.51367 -13.12581 -12.96362 -12.83377 -12.71628 -12.28902 -12.23620 -12.20696 -12.04252 -11.92834 -11.86581 -11.80499 -11.47608 -11.38124 -10.82582 -10.81665 -9.99702 -9.29198 -8.34762 -6.39446 -0.63342 0.09856 0.19622 0.66176 1.05123 1.31938 1.34268 1.38860 1.48513 1.75364 2.32309 2.53154 2.79929 3.00541 3.26720 3.47750 3.55525 3.84980 3.97993 4.08319 4.11704 4.14199 4.20762 4.25423 4.29432 4.31912 4.35830 4.47150 4.71137 4.80539 4.90240 4.94175 4.97199 5.13157 5.20089 5.25543 5.27752 5.33767 5.35544 5.42431 5.54850 5.83069 6.03378 6.18912 6.65830 6.83671 7.21437 7.25850 8.81134 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003411 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.963249 B = 8206.324691 C = 9303.848986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.266 3.734 4 N -0.351 5.351 5 N -0.058 5.058 6 N -0.113 5.113 7 N -0.324 5.324 8 C 0.059 3.941 9 C -0.077 4.077 10 C -0.109 4.109 11 C -0.069 4.069 12 C -0.153 4.153 13 C 0.160 3.840 14 N -0.665 5.665 15 C 0.523 3.477 16 O -0.538 6.538 17 C -0.118 4.118 18 C 0.009 3.991 19 C -0.535 4.535 20 H 0.045 0.955 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.258 1.258 27 H 0.106 0.894 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.412 0.588 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.014 0.986 40 H 0.019 0.981 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 -32.716 5.590 33.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.010 4.010 4 N -0.202 5.202 5 N -0.053 5.053 6 N -0.097 5.097 7 N -0.115 5.115 8 C -0.035 4.035 9 C -0.097 4.097 10 C -0.128 4.128 11 C -0.088 4.088 12 C -0.174 4.174 13 C 0.062 3.938 14 N -0.308 5.308 15 C 0.313 3.687 16 O -0.414 6.414 17 C -0.158 4.158 18 C -0.029 4.029 19 C -0.573 4.573 20 H 0.063 0.937 21 C -0.185 4.185 22 N -0.584 5.584 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.205 1.205 26 H -0.182 1.182 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.186 0.814 33 H 0.200 0.800 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.248 0.752 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.866 -31.313 5.438 32.741 hybrid contribution -0.287 0.766 -0.585 1.006 sum 7.579 -30.547 4.853 31.845 Atomic orbital electron populations 1.21766 0.91950 1.04941 1.01913 1.20821 0.97890 0.82040 1.08153 1.26861 0.93428 0.99477 0.81247 1.74426 1.20972 0.98733 1.26092 1.78082 1.09724 1.12985 1.04463 1.82782 1.20823 1.01071 1.05060 1.48851 1.44817 1.10432 1.07379 1.17418 1.09038 0.99035 0.77985 1.21286 0.96623 0.92779 0.99007 1.21493 0.99350 1.01665 0.90269 1.21687 0.93639 0.91333 1.02091 1.21731 1.02847 0.98816 0.93992 1.18055 0.95789 0.85604 0.94334 1.43659 1.61300 1.12797 1.13040 1.21349 0.77800 0.85147 0.84365 1.90564 1.49595 1.79623 1.21661 1.21558 1.01504 0.91302 1.01440 1.19207 0.96465 0.93286 0.93897 1.21379 1.37365 1.00972 0.97572 0.93708 1.25866 0.94692 0.94566 1.03413 1.70038 1.43942 1.08123 1.36299 0.85751 0.80000 0.77883 0.79634 1.18888 1.20460 1.18234 0.87489 0.92617 0.93643 0.85917 0.84852 0.81406 0.80017 0.82024 0.84039 0.75180 0.87696 0.88468 0.96726 0.96260 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 71.98 0.71 -0.44 16 2 C -0.05 -0.37 6.28 29.85 0.19 -0.18 16 3 C 0.27 5.00 7.25 138.05 1.00 6.00 16 4 N -0.35 -9.02 12.16 -50.30 -0.61 -9.63 16 5 N -0.06 -1.78 13.39 37.02 0.50 -1.29 16 6 N -0.11 -3.40 12.58 37.02 0.47 -2.94 16 7 N -0.32 -7.33 3.30 -178.74 -0.59 -7.92 16 8 C 0.06 1.17 6.19 38.18 0.24 1.41 16 9 C -0.08 -0.84 8.41 22.36 0.19 -0.65 16 10 C -0.11 -0.88 10.04 22.27 0.22 -0.66 16 11 C -0.07 -0.94 10.04 22.27 0.22 -0.72 16 12 C -0.15 -3.61 8.78 22.37 0.20 -3.42 16 13 C 0.16 4.08 6.51 38.25 0.25 4.33 16 14 N -0.67 -19.84 5.07 -303.15 -1.54 -21.38 16 15 C 0.52 18.95 7.68 87.66 0.67 19.63 16 16 O -0.54 -21.95 12.88 -3.07 -0.04 -21.99 16 17 C -0.12 -4.67 5.64 29.85 0.17 -4.50 16 18 C 0.01 0.47 3.33 29.85 0.10 0.57 16 19 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 20 H 0.04 2.80 7.99 -2.91 -0.02 2.77 16 21 C 0.01 0.74 5.47 84.65 0.46 1.21 16 22 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 23 Si 0.94 46.31 27.47 68.60 1.88 48.20 16 24 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 27 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.12 0.28 5.47 -2.39 -0.01 0.27 16 31 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.17 0.73 6.95 -2.91 -0.02 0.71 16 33 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.14 4.18 5.43 -2.91 -0.02 4.17 16 36 H 0.41 11.74 7.32 -92.71 -0.68 11.07 16 37 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.01 0.74 7.15 -2.38 -0.02 0.73 16 40 H 0.02 0.95 7.53 -2.39 -0.02 0.93 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -80.16 347.84 5.58 -74.58 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.34 Total: 10.22 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.87 Total: -8.48 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -1.48 Total: -102.53 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.20 kcal Total: -80.16 5.58 -74.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291486702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.734 kcal (2) G-P(sol) polarization free energy of solvation -80.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds