Wall clock time and date at job start Tue Mar 31 2020 11:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99429 * 2 1 4 4 N 1.46910 * 109.46811 * 124.14217 * 3 2 1 5 5 C 1.46893 * 110.99723 * 300.02454 * 4 3 2 6 6 C 1.50705 * 109.47595 * 288.16589 * 5 4 3 7 7 H 1.08005 * 119.99414 * 354.74444 * 6 5 4 8 8 C 1.37871 * 120.00143 * 174.73899 * 6 5 4 9 9 N 1.31516 * 120.00179 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47186 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47368 * 120.00384 * 10 8 6 13 13 H 1.48499 * 109.46870 * 240.00232 * 10 8 6 14 14 C 1.46898 * 111.00093 * 63.98121 * 4 3 2 15 15 C 1.50704 * 109.47193 * 66.04619 * 14 4 3 16 16 C 1.39902 * 125.88295 * 95.02106 * 15 14 4 17 17 C 1.35333 * 107.93326 * 179.75968 * 16 15 14 18 18 N 1.35202 * 107.71350 * 0.38952 * 17 16 15 19 19 C 1.40256 * 126.05206 * 179.87273 * 18 17 16 20 20 C 1.38792 * 120.07569 * 359.74187 * 19 18 17 21 21 C 1.38127 * 119.95822 * 179.97438 * 20 19 18 22 22 C 1.38293 * 120.11169 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.15597 * 0.02562 * 22 21 20 24 24 C 1.38343 * 120.04138 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.06040 * 179.97438 * 24 23 22 26 26 N 1.30892 * 125.87784 * 275.02627 * 15 14 4 27 27 H 1.08000 * 119.99418 * 180.02562 * 1 2 3 28 28 H 1.07991 * 120.00118 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00365 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47706 * 4.14256 * 3 2 1 31 31 H 1.09003 * 109.46915 * 244.13565 * 3 2 1 32 32 H 1.08998 * 109.47406 * 48.17386 * 5 4 3 33 33 H 1.09008 * 109.47020 * 168.16820 * 5 4 3 34 34 H 0.96996 * 120.00080 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47390 * 306.04614 * 14 4 3 36 36 H 1.09004 * 109.46924 * 186.04491 * 14 4 3 37 37 H 1.08001 * 126.03073 * 0.02562 * 16 15 14 38 38 H 1.07996 * 126.14318 * 180.26660 * 17 16 15 39 39 H 1.08007 * 120.02167 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.94743 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.92069 * 180.27722 * 22 21 20 42 42 H 1.07999 * 119.98326 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9815 1.3406 1.1464 5 6 2.2470 1.2201 2.4128 6 6 1.4916 2.4967 2.6790 7 1 1.6176 3.3454 2.0230 8 6 0.6398 2.5811 3.7598 9 7 0.4868 1.5477 4.5588 10 14 -0.2970 4.1633 4.0894 11 1 0.0487 5.1684 3.0523 12 1 -1.7564 3.8919 4.0495 13 1 0.0726 4.6875 5.4287 14 6 4.0078 0.2959 1.0314 15 6 4.8966 0.5925 -0.1489 16 6 6.1186 1.2723 -0.1049 17 6 6.6087 1.3302 -1.3650 18 7 5.7222 0.7156 -2.1800 19 6 5.8484 0.5582 -3.5680 20 6 6.9612 1.0621 -4.2268 21 6 7.0832 0.9052 -5.5937 22 6 6.0986 0.2464 -6.3071 23 6 4.9883 -0.2573 -5.6557 24 6 4.8595 -0.1038 -4.2868 25 9 3.7743 -0.5955 -3.6498 26 7 4.6580 0.2586 -1.3918 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3575 2.1323 0.0742 31 1 2.6333 1.3957 -0.9248 32 1 1.5447 0.3891 2.3479 33 1 2.9508 1.0383 3.2251 34 1 -0.1122 1.6072 5.3194 35 1 3.5268 -0.6719 0.8899 36 1 4.6075 0.2741 1.9414 37 1 6.5898 1.6754 0.7793 38 1 7.5398 1.7873 -1.6659 39 1 7.7313 1.5765 -3.6710 40 1 7.9495 1.2970 -6.1061 41 1 6.1994 0.1216 -7.3751 42 1 4.2212 -0.7717 -6.2155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292387126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:14 Heat of formation + Delta-G solvation = 82.638635 kcal Electronic energy + Delta-G solvation = -25616.232585 eV Core-core repulsion = 21899.040269 eV Total energy + Delta-G solvation = -3717.192315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.83970 -42.52422 -39.90673 -38.94325 -35.03792 -34.74408 -33.58136 -31.82489 -31.31009 -30.48388 -29.09070 -27.87628 -25.85875 -24.48658 -23.56323 -22.69696 -21.77633 -21.20188 -20.02705 -19.35803 -18.35253 -18.09026 -17.16147 -17.07204 -16.86206 -16.51053 -16.16522 -16.06410 -15.70712 -15.58965 -15.29828 -14.92452 -14.62192 -14.40574 -14.10784 -14.02565 -13.59371 -13.39624 -13.09884 -12.98737 -12.83421 -12.66863 -12.55422 -12.33089 -12.22494 -12.21579 -12.01462 -11.61254 -11.33432 -11.17878 -10.57592 -10.26244 -10.07872 -9.91544 -9.07627 -8.97477 -8.15473 -6.24130 -0.27937 0.10713 1.13069 1.34997 1.39585 1.41108 1.41856 1.54932 1.72804 2.43061 2.60322 3.08637 3.17005 3.34595 3.52224 3.73358 3.83219 3.93357 4.02676 4.07422 4.22264 4.27635 4.34028 4.46115 4.53160 4.62936 4.73771 4.77538 4.91282 4.94761 4.98984 5.02822 5.11314 5.20741 5.21789 5.33558 5.36160 5.55721 5.67133 5.68113 5.74387 5.85219 6.09111 6.19012 6.30822 6.58432 6.63893 6.90416 7.44217 8.95060 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.003128 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.735573 B = 8948.704433 C = 9446.496883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.181 4.181 3 C 0.101 3.899 4 N -0.527 5.527 5 C 0.208 3.792 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.130 3.870 15 C 0.085 3.915 16 C -0.254 4.254 17 C 0.059 3.941 18 N -0.336 5.336 19 C 0.100 3.900 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.094 4.094 23 C -0.138 4.138 24 C 0.053 3.947 25 F -0.145 7.145 26 N -0.310 5.310 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.068 0.932 32 H -0.016 1.016 33 H 0.006 0.994 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.097 0.903 37 H 0.170 0.830 38 H 0.226 0.774 39 H 0.167 0.833 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.962 -1.893 -22.922 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.201 4.201 3 C -0.027 4.027 4 N -0.250 5.250 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.000 4.000 15 C -0.082 4.082 16 C -0.282 4.282 17 C -0.082 4.082 18 N -0.112 5.112 19 C 0.007 3.993 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.157 4.157 24 C 0.032 3.968 25 F -0.123 7.123 26 N -0.131 5.131 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.002 0.998 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.188 0.812 38 H 0.242 0.758 39 H 0.184 0.816 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.301 -2.070 -23.572 28.734 hybrid contribution -1.140 -0.147 1.598 1.969 sum 15.161 -2.217 -21.974 26.789 Atomic orbital electron populations 1.23826 0.95779 1.01862 1.00282 1.23420 0.96936 0.99330 1.00404 1.21059 0.94117 0.94095 0.93395 1.62295 1.14162 1.45252 1.03282 1.19435 0.91376 0.95783 0.85197 1.21370 1.24229 0.98942 1.10677 0.92696 1.25780 0.97734 0.99792 0.95835 1.70081 1.38742 1.31725 1.16640 0.85437 0.78093 0.79555 0.78163 1.19140 1.20567 1.20233 1.20431 0.92481 0.93395 0.93648 1.22487 0.96064 0.97068 0.92590 1.21786 0.97521 1.09710 0.99196 1.23215 0.97457 0.98134 0.89406 1.45961 1.16517 1.43714 1.05056 1.18215 0.98217 1.03586 0.79320 1.21197 0.95318 1.00726 0.96274 1.21563 1.00350 0.97153 0.91876 1.21565 0.91664 0.95690 1.02325 1.21432 1.01681 1.02330 0.90303 1.17994 0.85261 1.01414 0.92180 1.91538 1.52496 1.85651 1.82654 1.77656 1.08632 1.23812 1.02987 0.87506 0.89025 0.88469 0.92081 0.91433 0.99811 0.97572 0.92807 0.94668 0.88519 0.81224 0.75753 0.81584 0.80241 0.80822 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.23 14.32 67.78 0.97 -6.26 16 2 C -0.18 -7.77 7.42 25.64 0.19 -7.58 16 3 C 0.10 4.58 5.49 85.56 0.47 5.05 16 4 N -0.53 -24.66 4.65 -909.91 -4.23 -28.89 16 5 C 0.21 11.35 4.59 85.56 0.39 11.74 16 6 C -0.51 -29.89 8.52 25.60 0.22 -29.67 16 7 H 0.05 3.21 7.66 -2.91 -0.02 3.19 16 8 C 0.01 0.38 5.46 84.65 0.46 0.84 16 9 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 10 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.13 5.25 5.36 85.56 0.46 5.71 16 15 C 0.08 3.11 5.98 43.10 0.26 3.37 16 16 C -0.25 -7.38 10.74 22.00 0.24 -7.14 16 17 C 0.06 1.38 10.80 83.50 0.90 2.28 16 18 N -0.34 -9.96 3.80 -187.61 -0.71 -10.68 16 19 C 0.10 2.42 6.70 38.11 0.26 2.68 16 20 C -0.11 -1.56 9.45 22.38 0.21 -1.35 16 21 C -0.09 -0.73 10.04 22.26 0.22 -0.51 16 22 C -0.09 -0.88 10.04 22.28 0.22 -0.66 16 23 C -0.14 -2.34 10.02 22.29 0.22 -2.12 16 24 C 0.05 1.39 7.29 22.48 0.16 1.55 16 25 F -0.14 -5.03 15.54 44.97 0.70 -4.33 16 26 N -0.31 -11.63 9.67 -47.33 -0.46 -12.09 16 27 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.09 3.73 7.84 -2.92 -0.02 3.71 16 29 H 0.10 4.11 6.79 -2.91 -0.02 4.09 16 30 H 0.06 2.95 7.03 -2.39 -0.02 2.93 16 31 H 0.07 3.03 6.32 -2.39 -0.02 3.02 16 32 H -0.02 -0.94 6.72 -2.39 -0.02 -0.95 16 33 H 0.01 0.36 7.81 -2.38 -0.02 0.34 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.04 1.46 6.33 -2.39 -0.02 1.45 16 36 H 0.10 3.66 7.86 -2.38 -0.02 3.64 16 37 H 0.17 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.23 2.59 7.04 -2.91 -0.02 2.57 16 39 H 0.17 1.22 6.74 -2.91 -0.02 1.20 16 40 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.17 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.36 356.76 4.50 -72.86 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.03 Total: 14.06 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 5.86 Total: -22.06 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.12 Total: -107.97 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.70 Total: -4.33 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.36 4.50 -72.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292387126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.503 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds