Wall clock time and date at job start Tue Mar 31 2020 11:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00483 * 2 1 4 4 N 1.46892 * 109.46919 * 126.37426 * 3 2 1 5 5 C 1.46900 * 110.99849 * 162.91110 * 4 3 2 6 6 C 1.50709 * 109.46928 * 293.95015 * 5 4 3 7 7 H 1.07995 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31523 * 120.00084 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00064 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46909 * 60.00153 * 10 8 6 12 12 H 1.48502 * 109.47350 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47020 * 300.00476 * 10 8 6 14 14 C 1.46902 * 111.00254 * 286.86098 * 4 3 2 15 15 C 1.50696 * 109.47035 * 73.46346 * 14 4 3 16 16 C 1.35091 * 126.07695 * 244.50638 * 15 14 4 17 17 N 1.35038 * 107.98113 * 179.97438 * 16 15 14 18 18 H 0.96994 * 125.92772 * 180.02562 * 17 16 15 19 19 N 1.40068 * 108.13978 * 0.02562 * 17 16 15 20 20 C 1.31630 * 108.10976 * 359.73364 * 19 17 16 21 21 C 1.48404 * 126.03839 * 180.27575 * 20 19 17 22 22 C 1.39316 * 120.12769 * 228.47890 * 21 20 19 23 23 C 1.38007 * 119.90095 * 179.69884 * 22 21 20 24 24 C 1.38346 * 120.17223 * 0.57409 * 23 22 21 25 25 C 1.38256 * 120.26615 * 359.72747 * 24 23 22 26 26 C 1.38280 * 120.09337 * 359.97094 * 25 24 23 27 27 F 1.35106 * 120.08377 * 180.02562 * 26 25 24 28 28 H 1.08006 * 119.99713 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00632 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99713 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46921 * 6.37551 * 3 2 1 32 32 H 1.08996 * 109.47182 * 246.37819 * 3 2 1 33 33 H 1.08998 * 109.47227 * 53.94878 * 5 4 3 34 34 H 1.08995 * 109.47530 * 173.95508 * 5 4 3 35 35 H 0.97000 * 119.99348 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47596 * 193.46810 * 14 4 3 37 37 H 1.09002 * 109.46771 * 313.46378 * 14 4 3 38 38 H 1.08002 * 126.00766 * 359.95065 * 16 15 14 39 39 H 1.07997 * 120.04493 * 359.97438 * 22 21 20 40 40 H 1.08006 * 119.91305 * 180.28000 * 23 22 21 41 41 H 1.07998 * 119.87020 * 179.74184 * 24 23 22 42 42 H 1.08004 * 119.95682 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0197 1.3183 1.1151 5 6 4.0370 2.3607 0.9239 6 6 4.8869 2.0196 -0.2730 7 1 4.6906 1.1188 -0.8356 8 6 5.9143 2.8580 -0.6504 9 7 6.1530 3.9552 0.0344 10 14 6.9673 2.4356 -2.1344 11 1 6.1087 2.3536 -3.3433 12 1 7.9950 3.4899 -2.3284 13 1 7.6347 1.1279 -1.9116 14 6 2.3278 1.4874 2.3999 15 6 1.6202 0.2070 2.7617 16 6 0.2843 0.0408 2.8739 17 7 0.0512 -1.2457 3.2117 18 1 -0.8196 -1.6468 3.3586 19 7 1.2853 -1.9004 3.3132 20 6 2.2339 -1.0304 3.0376 21 6 3.6924 -1.3042 3.0228 22 6 4.5707 -0.4515 3.6878 23 6 5.9255 -0.7141 3.6763 24 6 6.4147 -1.8151 2.9962 25 6 5.5499 -2.6625 2.3286 26 6 4.1898 -2.4133 2.3382 27 9 3.3449 -3.2418 1.6862 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3608 2.1304 0.1141 32 1 2.6019 1.4138 -0.9415 33 1 3.5473 3.3206 0.7601 34 1 4.6669 2.4208 1.8114 35 1 6.8761 4.5448 -0.2310 36 1 3.0545 1.7323 3.1745 37 1 1.5995 2.2941 2.3169 38 1 -0.4655 0.8029 2.7208 39 1 4.1915 0.4112 4.2153 40 1 6.6062 -0.0556 4.1956 41 1 7.4762 -2.0136 2.9869 42 1 5.9373 -3.5203 1.7990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292722203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:23 Heat of formation + Delta-G solvation = 88.049081 kcal Electronic energy + Delta-G solvation = -26990.478031 eV Core-core repulsion = 23273.520330 eV Total energy + Delta-G solvation = -3716.957701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.43492 -41.00799 -38.35517 -36.99000 -33.17456 -32.80621 -32.07630 -30.59465 -30.21248 -29.28747 -26.97074 -25.81826 -23.65697 -23.35202 -22.37471 -20.81053 -20.41043 -19.39624 -19.18689 -17.48126 -17.15589 -16.25016 -15.86891 -15.57320 -15.16253 -15.04454 -14.76049 -14.33176 -14.15363 -14.03523 -13.60520 -13.44152 -13.09380 -12.78398 -12.68057 -12.56377 -12.04914 -11.92146 -11.50741 -11.43938 -11.34273 -10.94023 -10.85182 -10.78921 -10.62744 -10.35058 -10.24251 -9.86744 -9.55576 -9.23262 -9.08014 -8.51015 -8.41217 -8.19093 -7.84566 -7.18467 -6.00243 -4.00438 1.34142 1.59835 2.15147 2.76344 3.02862 3.13957 3.35186 3.39022 3.42994 4.00334 4.45687 4.61099 4.71282 4.96000 5.09406 5.22866 5.25519 5.36304 5.50525 5.55110 5.58808 5.67529 5.73704 5.75648 5.98266 6.06864 6.18407 6.26131 6.32361 6.40675 6.43564 6.53068 6.61572 6.62108 6.70625 6.89037 7.12052 7.15095 7.23018 7.35778 7.42357 7.45950 7.84032 7.88228 8.13685 8.25719 8.59762 9.07181 9.63577 11.10357 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.006015 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.195657 B = 4654.277481 C = 5870.574798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.096 4.096 3 C 0.086 3.914 4 N -0.522 5.522 5 C 0.197 3.803 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.127 3.873 15 C -0.192 4.192 16 C 0.062 3.938 17 N -0.478 5.478 18 H 0.435 0.565 19 N -0.286 5.286 20 C 0.137 3.863 21 C -0.022 4.022 22 C -0.054 4.054 23 C -0.123 4.123 24 C -0.086 4.086 25 C -0.158 4.158 26 C 0.120 3.880 27 F -0.137 7.137 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.023 0.977 32 H 0.093 0.907 33 H -0.011 1.011 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.169 0.831 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -8.624 8.057 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.114 4.114 3 C -0.042 4.042 4 N -0.246 5.246 5 C 0.072 3.928 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.143 4.143 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.002 4.002 15 C -0.204 4.204 16 C -0.084 4.084 17 N -0.186 5.186 18 H 0.278 0.722 19 N -0.110 5.110 20 C -0.028 4.028 21 C -0.025 4.025 22 C -0.074 4.074 23 C -0.141 4.141 24 C -0.105 4.105 25 C -0.177 4.177 26 C 0.100 3.900 27 F -0.115 7.115 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.006 0.994 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.186 0.814 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.934 -10.110 8.361 15.332 hybrid contribution -0.353 1.168 -1.314 1.793 sum -8.288 -8.942 7.047 14.082 Atomic orbital electron populations 1.23456 0.95922 1.00202 1.07320 1.23034 0.95183 0.99311 0.93910 1.21178 0.93529 0.92333 0.97165 1.61981 1.12818 1.50868 0.98917 1.19707 0.88559 0.86937 0.97620 1.21100 1.14021 1.07243 1.11727 0.92034 1.24928 0.97412 0.95017 0.96961 1.69945 1.31322 1.12641 1.39975 0.86644 0.80122 0.78001 0.83153 1.20394 1.21432 1.20160 1.20352 0.95641 0.90521 0.93699 1.20051 0.91718 0.96879 1.11720 1.22145 0.97383 0.87751 1.01169 1.46049 1.07853 1.07820 1.56906 0.72161 1.77577 0.88648 1.19598 1.25138 1.20231 0.91923 0.91617 0.99066 1.17607 0.89283 0.95179 1.00457 1.20897 0.92545 0.97112 0.96817 1.21036 0.95101 0.97582 1.00409 1.20960 0.99422 0.94146 0.95939 1.20951 0.91250 1.02266 1.03250 1.17596 0.87550 0.89566 0.95303 1.91479 1.70889 1.70282 1.78891 0.89480 0.89973 0.88160 0.95865 0.88890 0.99358 0.95018 0.92978 0.90863 0.95287 0.81394 0.85274 0.85324 0.85404 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.33 12.04 29.02 0.35 -2.98 16 2 C -0.10 -1.65 7.36 -36.02 -0.27 -1.91 16 3 C 0.09 1.66 5.26 -4.98 -0.03 1.63 16 4 N -0.52 -10.69 4.47 -238.97 -1.07 -11.75 16 5 C 0.20 4.85 4.71 -4.97 -0.02 4.82 16 6 C -0.50 -13.64 8.27 -34.44 -0.28 -13.92 16 7 H 0.06 1.69 7.27 -52.49 -0.38 1.31 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.13 2.20 4.86 -4.98 -0.02 2.17 16 15 C -0.19 -3.01 3.55 -104.76 -0.37 -3.38 16 16 C 0.06 0.79 9.25 -17.26 -0.16 0.63 16 17 N -0.48 -5.93 7.35 30.42 0.22 -5.70 16 18 H 0.44 3.80 8.96 -182.63 -1.64 2.16 16 19 N -0.29 -4.65 12.58 33.43 0.42 -4.23 16 20 C 0.14 2.32 6.33 -82.78 -0.52 1.80 16 21 C -0.02 -0.39 5.70 -104.84 -0.60 -0.98 16 22 C -0.05 -0.86 9.04 -39.27 -0.35 -1.22 16 23 C -0.12 -1.78 10.03 -39.63 -0.40 -2.18 16 24 C -0.09 -1.20 10.04 -39.54 -0.40 -1.60 16 25 C -0.16 -2.39 10.02 -39.56 -0.40 -2.78 16 26 C 0.12 2.09 7.28 -39.09 -0.28 1.81 16 27 F -0.14 -2.51 16.69 2.25 0.04 -2.48 16 28 H 0.09 1.16 7.85 -52.48 -0.41 0.74 16 29 H 0.08 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 31 H 0.02 0.43 7.48 -51.93 -0.39 0.04 16 32 H 0.09 2.01 6.58 -51.93 -0.34 1.67 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.03 0.83 7.85 -51.93 -0.41 0.42 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 1.26 6.29 -51.93 -0.33 0.93 16 37 H 0.03 0.48 7.78 -51.93 -0.40 0.07 16 38 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.89 6.83 -52.49 -0.36 1.53 16 40 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -31.27 356.08 -9.91 -41.18 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.75 Total: 2.98 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.85 Total: -16.59 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.31 Total: -46.90 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.27 -9.91 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292722203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.231 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds