Wall clock time and date at job start Tue Mar 31 2020 10:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.06871 * 2 1 4 4 C 1.40403 * 107.86427 * 180.15491 * 3 2 1 5 5 N 1.40160 * 125.97087 * 179.82605 * 4 3 2 6 6 C 1.34777 * 120.00121 * 359.71540 * 5 4 3 7 7 O 1.21297 * 120.00023 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.38590 * 120.80025 * 269.72352 * 10 9 8 12 12 N 1.32339 * 119.10382 * 179.72248 * 11 10 9 13 13 C 1.31795 * 120.81857 * 0.55985 * 12 11 10 14 14 N 1.31799 * 121.75137 * 359.71344 * 13 12 11 15 15 C 1.32333 * 120.81867 * 359.97438 * 14 13 12 16 16 N 1.31221 * 108.05657 * 359.56147 * 4 3 2 17 17 N 1.34965 * 126.07158 * 179.67018 * 2 1 3 18 18 C 1.46502 * 125.97257 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.46993 * 270.00778 * 18 17 2 20 20 H 1.08004 * 119.99439 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00272 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99549 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47211 * 60.00542 * 23 21 19 25 25 H 1.48503 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47181 * 300.00107 * 23 21 19 27 27 H 1.08995 * 109.47712 * 270.32247 * 1 2 3 28 28 H 1.09004 * 109.47220 * 30.32964 * 1 2 3 29 29 H 1.09007 * 109.46683 * 150.32165 * 1 2 3 30 30 H 1.07994 * 126.06591 * 359.97438 * 3 2 1 31 31 H 0.97003 * 120.00239 * 179.71470 * 5 4 3 32 32 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 33 33 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 34 34 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 35 35 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 36 36 H 1.08001 * 120.45435 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.12776 * 179.73375 * 13 12 11 38 38 H 1.08006 * 120.44657 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47772 * 30.01052 * 18 17 2 40 40 H 1.09005 * 109.47183 * 150.01142 * 18 17 2 41 41 H 0.97001 * 119.99583 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0036 5 7 4.7734 1.4749 -0.0082 6 6 4.6367 2.8157 -0.0153 7 8 3.5301 3.3125 -0.0182 8 6 5.8585 3.6978 -0.0209 9 6 5.4277 5.1659 -0.0278 10 6 6.6496 6.0479 -0.0327 11 6 7.2222 6.4738 1.1553 12 7 8.2981 7.2431 1.1119 13 6 8.8176 7.6129 -0.0415 14 7 8.2969 7.2319 -1.1908 15 6 7.2246 6.4572 -1.2256 16 7 3.6336 -0.6576 0.0039 17 7 2.3017 -1.0909 0.0063 18 6 1.8500 -2.4845 0.0148 19 6 1.6955 -2.9537 1.4386 20 1 1.9117 -2.2809 2.2553 21 6 1.2771 -4.2416 1.6985 22 7 1.0135 -5.0606 0.7039 23 14 1.0850 -4.8228 3.4633 24 1 0.0843 -3.9736 4.1580 25 1 0.6273 -6.2355 3.4721 26 1 2.3911 -4.7218 4.1628 27 1 -0.3634 0.0058 1.0276 28 1 -0.3634 0.8870 -0.5190 29 1 -0.3633 -0.8929 -0.5089 30 1 1.9719 2.1211 -0.0004 31 1 5.6584 1.0777 -0.0063 32 1 6.4533 3.4891 -0.9102 33 1 6.4544 3.4986 0.8697 34 1 4.8331 5.3743 0.8617 35 1 4.8315 5.3653 -0.9183 36 1 6.7986 6.1784 2.1039 37 1 9.6935 8.2447 -0.0451 38 1 6.8026 6.1489 -2.1708 39 1 0.8913 -2.5590 -0.4983 40 1 2.5846 -3.1077 -0.4954 41 1 0.7195 -5.9667 0.8868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292811256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:50 Heat of formation + Delta-G solvation = 80.822709 kcal Electronic energy + Delta-G solvation = -24315.314629 eV Core-core repulsion = 20617.963531 eV Total energy + Delta-G solvation = -3697.351098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44041 -40.78371 -39.43771 -35.34119 -34.78155 -34.09051 -33.41660 -31.62255 -31.06619 -30.45763 -26.94568 -26.41414 -25.79074 -24.99712 -23.29492 -22.51508 -21.04153 -19.85302 -19.22179 -18.03058 -18.01363 -16.97200 -16.70657 -16.24593 -15.79795 -15.40101 -15.12913 -14.77358 -14.45544 -14.22944 -14.06257 -13.97002 -13.79555 -13.46179 -13.01548 -12.69637 -12.51002 -12.32824 -12.21412 -11.72148 -11.57036 -11.43691 -11.24164 -11.22286 -11.12915 -10.84131 -10.50995 -10.27457 -10.04048 -9.85193 -9.61527 -9.59085 -9.57873 -8.66824 -7.99240 -7.51158 -6.28403 -4.36153 0.44787 0.66014 2.24123 2.70179 2.85915 3.21027 3.25095 3.29039 3.36232 3.65877 3.72790 3.81054 3.81958 4.17804 4.24995 4.30182 4.38691 4.53630 4.81196 4.84291 5.04630 5.05499 5.17381 5.29473 5.41396 5.65704 5.65837 5.69443 5.87670 5.98053 6.07333 6.20017 6.39883 6.48723 6.53379 6.66453 6.89078 7.01637 7.39616 7.58286 7.63834 7.65724 7.85545 8.00494 8.17178 8.60342 8.71209 9.30148 10.78889 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.002107 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.506722 B =13283.013314 C =13662.272959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.291 4.291 4 C 0.261 3.739 5 N -0.631 5.631 6 C 0.518 3.482 7 O -0.516 6.516 8 C -0.131 4.131 9 C -0.057 4.057 10 C -0.185 4.185 11 C 0.151 3.849 12 N -0.519 5.519 13 C 0.285 3.715 14 N -0.519 5.519 15 C 0.151 3.849 16 N -0.321 5.321 17 N -0.316 5.316 18 C 0.258 3.742 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.411 0.589 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.169 0.831 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 20.748 -2.822 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.322 4.322 4 C 0.009 3.991 5 N -0.279 5.279 6 C 0.304 3.696 7 O -0.390 6.390 8 C -0.172 4.172 9 C -0.096 4.096 10 C -0.189 4.189 11 C -0.015 4.015 12 N -0.232 5.232 13 C -0.002 4.002 14 N -0.232 5.232 15 C -0.015 4.015 16 N -0.151 5.151 17 N -0.098 5.098 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.246 0.754 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.186 0.814 37 H 0.212 0.788 38 H 0.186 0.814 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.603 20.340 -2.877 23.117 hybrid contribution -0.684 -0.645 0.975 1.354 sum 9.919 19.695 -1.903 22.133 Atomic orbital electron populations 1.20337 0.87857 1.02852 1.03196 1.21086 0.94944 0.87190 1.00817 1.21234 0.89702 0.99769 1.21447 1.19007 0.87269 0.89615 1.03242 1.42522 1.07581 1.05214 1.72557 1.20554 0.91346 0.81476 0.76224 1.90666 1.26864 1.73809 1.47692 1.21624 0.96303 0.94015 1.05225 1.20227 0.93094 0.90500 1.05801 1.21732 1.00141 1.01363 0.95645 1.23259 0.89768 0.89938 0.98526 1.68459 1.11199 1.12522 1.31016 1.24999 0.97858 0.94630 0.82754 1.68456 1.11255 1.12246 1.31268 1.23251 0.89802 0.90029 0.98429 1.77260 0.99980 1.08568 1.29317 1.49000 1.00961 1.07829 1.52028 1.19696 0.95988 0.71285 0.98955 1.21267 1.46965 0.97993 0.91291 0.91834 1.24928 0.94648 0.96037 0.98177 1.69908 1.44775 1.07000 1.31242 0.86404 0.78808 0.77677 0.83732 1.19920 1.20938 1.19994 0.90399 0.90802 0.90842 0.82321 0.75433 0.88337 0.88331 0.89092 0.89097 0.81370 0.78839 0.81384 0.92767 0.93006 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.11 36.00 0.36 -1.04 16 2 C 0.09 1.87 6.92 -82.28 -0.57 1.30 16 3 C -0.29 -5.75 9.52 -39.83 -0.38 -6.13 16 4 C 0.26 5.08 8.11 -154.39 -1.25 3.82 16 5 N -0.63 -8.84 5.45 -11.13 -0.06 -8.90 16 6 C 0.52 6.25 7.80 -10.99 -0.09 6.17 16 7 O -0.52 -7.93 13.11 5.54 0.07 -7.86 16 8 C -0.13 -0.90 5.68 -27.89 -0.16 -1.06 16 9 C -0.06 -0.37 4.68 -27.88 -0.13 -0.50 16 10 C -0.18 -1.22 5.17 -104.36 -0.54 -1.75 16 11 C 0.15 1.08 11.01 -17.20 -0.19 0.89 16 12 N -0.52 -4.49 10.44 -14.58 -0.15 -4.64 16 13 C 0.29 2.24 12.29 -92.15 -1.13 1.11 16 14 N -0.52 -4.45 10.44 -14.58 -0.15 -4.60 16 15 C 0.15 1.06 11.01 -17.20 -0.19 0.87 16 16 N -0.32 -7.22 12.59 31.44 0.40 -6.82 16 17 N -0.32 -7.35 3.59 -58.32 -0.21 -7.56 16 18 C 0.26 6.54 5.99 -5.19 -0.03 6.51 16 19 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 20 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 23 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 30 H 0.16 3.02 5.91 -52.49 -0.31 2.70 16 31 H 0.41 4.52 8.82 -40.82 -0.36 4.16 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.63 8.06 -51.93 -0.42 0.22 16 35 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.05 1.36 7.04 -51.93 -0.37 0.99 16 40 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -33.97 358.87 -8.86 -42.83 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.17 Total: 3.40 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.71 Total: -3.07 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.56 Total: -56.59 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.97 -8.86 -42.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292811256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.655 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds